Homology
BLAST of mRNA_C-linearis_contig10.464.1 vs. uniprot
Match:
A0A6H5JBH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH3_9PHAE)
HSP 1 Score: 89.4 bits (220), Expect = 1.580e-15
Identity = 52/156 (33.33%), Postives = 84/156 (53.85%), Query Frame = 1
Query: 367 CLDALAITLNAAVDQRGLWYSSTSTKELQMVCLDLCVACRSSWNISTMHVVVTATTSRHLWLHGGQDDDGKKRHNA-LRVPRLPVRAVTVSKWPKRVLPCPPNRERPLSHIRR------VLRRGSNRLGWGPRWWPETLQEVRFGDEFNRPVNDLV 813
CL+ALA+ + D +G+W++ST T L+ VCLD+ ++CR+ HV VT T R LWL G +D + R+P VR V++ ++P +VL P ERP + + V + + WWP++++E+RFG FN P++ +
Sbjct: 8 CLEALAVAIRNTSD-KGVWFASTRT--LKTVCLDIYLSCRNRATARACHVEVTVDTPRRLWLRGEEDALSLNSNGPPSRIPPPAVRVVSLEEYPAQVLARAPKEERPTTTLDASGLPADVGQVALDEPKQSREWWPDSVEELRFGSRFNHPLDSSI 160
BLAST of mRNA_C-linearis_contig10.464.1 vs. uniprot
Match:
A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)
HSP 1 Score: 61.2 bits (147), Expect = 2.600e-6
Identity = 54/179 (30.17%), Postives = 73/179 (40.78%), Query Frame = 1
Query: 364 ACLDALAITLNAAVDQRGLWYSSTSTKELQMVCLDLCVACRSSWNISTMHVVVTATTSRHLWLHGGQDDDGKKRHNALRVPRLPVRAVTVSK---------------------------------WPKRVLPCPPNRERPLSHIRRVLRRGSNRLGWGPRWWPETLQEVRFGDEFNRPV 801
+CL L + LN D + WY TSTKELQ+ L+LC+ACR + T+H+ V A T R L KR RVPRL R T + WP+R+ + PL NRL G W P +L++V G +FN+P+
Sbjct: 135 SCLKTLTVALNETCDGKS-WY--TSTKELQLASLELCMACR---HYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPL-----------NRLLDGVSW-PASLRKVCLGHDFNQPI 295
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.464.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.58e-15 / Id = 33.33 Expect = 2.60e-6 / Id = 30.17 Sequence A0A6H5JBH3_9PHAE A0A6H5KPY7_9PHAE back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 3 Model size 1441 Cds size 1110 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927330.3786137-UTR-C-linearis_contig10:932299..932398 1622927330.3786137-UTR-C-linearis_contig10:932299..932398 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 932300..932398 + 1690879630.0048227-UTR-C-linearis_contig10:932299..932398 1690879630.0048227-UTR-C-linearis_contig10:932299..932398 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 932300..932398 + 1622927330.388018-UTR-C-linearis_contig10:932881..933112 1622927330.388018-UTR-C-linearis_contig10:932881..933112 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 932882..933112 + 1690879630.0183508-UTR-C-linearis_contig10:932881..933112 1690879630.0183508-UTR-C-linearis_contig10:932881..933112 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 932882..933112 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927330.3966134-CDS-C-linearis_contig10:933112..933137 1622927330.3966134-CDS-C-linearis_contig10:933112..933137 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 933113..933137 + 1690879630.0331464-CDS-C-linearis_contig10:933112..933137 1690879630.0331464-CDS-C-linearis_contig10:933112..933137 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 933113..933137 + 1622927330.407281-CDS-C-linearis_contig10:933382..934467 1622927330.407281-CDS-C-linearis_contig10:933382..934467 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 933383..934467 + 1690879630.043973-CDS-C-linearis_contig10:933382..934467 1690879630.043973-CDS-C-linearis_contig10:933382..934467 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 933383..934467 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.464.1
>prot_C-linearis_contig10.464.1 ID=prot_C-linearis_contig10.464.1|Name=mRNA_C-linearis_contig10.464.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=370bp
MVNTTGPAGGIACLDALAITLNAAVDQRGLWYSSTSTKELQMVCLDLCVA back to top mRNA from alignment at C-linearis_contig10:932300..934467+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.464.1 ID=mRNA_C-linearis_contig10.464.1|Name=mRNA_C-linearis_contig10.464.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2168bp|location=Sequence derived from alignment at C-linearis_contig10:932300..934467+ (Chordaria linearis ClinC8C monoicous)ATCCGACATCCACGCGAGACACAACTCAAGGAGCCGAGTTATTCTTACGA
GGGTGTGAAAGTCGACGCTTGGAACAACAGATCCAGGCAGCAGAGAAAG G
TATGTGCCGGGGGGCTGTCTGAACGCGGGAGGTGCGTGTTTGTGTCGCGG
TTTGCCTACAACTGCGTGTGCGGCGAAATGGAGAGGGAGGTTGCAGTTTA
CGAGATGATCATGAGCATAAGTCGCCAGAGTGCTCCATTCTTTGCAAGAG
TCCATGCTTACTCGGCTGACACACCTCGAAGGAACCCTACCTTGAGGTAC
ATACATTGTGACTGCTCTGTTGTGAAAATGTAGTACTCTGTTTCAAACTT
CAACGGCGCAGACATTTTGTGGATTATCGCCGTGTGGTGTGTGCCGTACA
TAGTCTTCTTGCTGACGAAGAGTTGATTTGGTGTGGTGGCGGCATCACTC
GCAACTCGTTCATGCCGCTGTCTTAAACGAGTTGGCGTTGCGTCCTCCCG
GTTGTCCTGGCACGGGCGGAATGACACACCAACATTGTCTTCCTCGCTCT
CTCCCGTGTCTGCCTACTGCTGCTGACCTCAGCGTCTTTTTTACACACCA
CCGCAAGAAGCGGCCTCTCACAGAGAGGCAACAAAAAAACGCTACTCTGT
AGACTGCATATATACGAGTGCCAGCGTGGTTTCAACTCGGGAAGCTAGAG
TTCTCGACAGCGACTTCCACATTACTACTTTGAGGAGGTGGAGCCGGCCT
CTAGACTAGAGTGCTTGTGGAGGCGGCTCAACTCCCCCCGTGAAGACACT
GCACGGAGGAGAG ATGGTGAACACAACAGGACCTGCAG GTTGGTGTTCGG
CTTGATCGGGTGCGGTTGGTAGCGTTAGACGCCGGTCATACTTGCGCGCG
GAGAAAATGATCTTAGGGCTTATTTGGGGGGCGGTTGGGTTGGGTTGTGT
TTGACAAAAGTTGTACAACATACTGCTGGAAATGACTACGGCGGTGCTGT
CTCCCCGTCGGGCTGATGTGCTGCCTCTGCCGCTGCTGCTGCCGTACTTT
GCTGTCGTTCCGTTTGCCCGACAACGTTGATAGGTGGGATCGCATGCCTC
GACGCCCTGGCCATCACCTTGAACGCTGCCGTCGACCAGCGGGGGCTGTG
GTATTCTTCGACTTCGACGAAGGAGCTGCAGATGGTGTGCCTTGACCTGT
GCGTGGCTTGTCGGTCCTCATGGAACATCTCGACCATGCACGTCGTGGTC
ACAGCCACAACATCTCGCCACCTGTGGCTCCATGGTGGGCAAGATGACGA
CGGAAAGAAGAGACATAACGCACTGAGGGTGCCGCGCTTGCCCGTACGCG
CCGTGACGGTGTCGAAATGGCCAAAGCGTGTTCTACCGTGCCCTCCAAAC
AGGGAACGCCCATTGAGTCACATTCGGCGGGTGCTTCGGCGTGGGTCAAA
TCGGCTTGGGTGGGGCCCACGGTGGTGGCCTGAGACCCTGCAGGAAGTTA
GATTCGGGGACGAGTTCAACAGACCTGTCAACGATTTGGTGTGGCCGGCC
TCGCTGCGGCAGCTGTCGTTCGGGTATCTGTTCAACCAGCCCATTGCCGG
AGTTGTGTGGCCGGCCTCGCTGCAGCAGCTATCCTTCGGACACAGCTTCA
ACCAGTACTTTGCCGGCGTGAAGTGGCCGGCTTCGCTGCAGCAGCTGTCG
TTCGGGAATATGTTCAACCAATCTATCGCCGACGTTGTGTGGCCGGCCTC
CCTGCGACGGCTATCCTTCCGACGTGATTTCAACCATTACCTTGCCCGAG
TGAACTGGCCGGATTCGCTGCAGCAGCTGTCGTTTGGGCAATGCTTCAAC
AAGCCTATCGCTCGAGTTGTGTGGCCGGCTTCCCTGCAGAAGTTGTCGTT
TGAAGAGAACTTCAACCAGCCCATCACCGGAGTTGAGTGGCCAGCGTCGC
TGCGACAGCTGTCCTTTGGGAGAATGTTCAATCGCCCTACCGCCGGAGTC
GTGTGGCCATGCAATCTCCAGCAGCTGTCGTTCGGAAACTGCTTTGACCA
GCCCATTGTCGGGGCCACCTGGCCTGCATCCCTGCAAAAGTTAAAGTTCG
GGGCTCGCTTCAACCAGCCCATCCTCGGGGTTGCATGGCCGAGTTCCCTG
CAGAAGTTGTCGTTTGAA back to top Coding sequence (CDS) from alignment at C-linearis_contig10:932300..934467+
>mRNA_C-linearis_contig10.464.1 ID=mRNA_C-linearis_contig10.464.1|Name=mRNA_C-linearis_contig10.464.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2220bp|location=Sequence derived from alignment at C-linearis_contig10:932300..934467+ (Chordaria linearis ClinC8C monoicous) back to top