Homology
BLAST of mRNA_C-linearis_contig10.455.1 vs. uniprot
Match:
A0A6H5JAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT0_9PHAE)
HSP 1 Score: 200 bits (508), Expect = 4.920e-61
Identity = 93/111 (83.78%), Postives = 100/111 (90.09%), Query Frame = -1
Query: 1 VACMDFAHCKGDWNGTIGAISTKSSNNNIVHLATCIVAKETGDAYRYLIDNALKNPSVAAFLNKPSTTIITDKHKGSESAVPDRLDQAEYLRCGEHMLKNCGAVGPVRRSH 333
V CMDFAH KG+WNGTIGA++TKSS+N IVHLATCIVAKE G+AYRYLIDNALKNP+VAAFL KPSTTIITDKHKGSESAVPD LD+AEYL C EHMLKNCGAVGP R H
Sbjct: 204 VLCMDFAHMKGEWNGTIGAMTTKSSDNTIVHLATCIVAKENGNAYRYLIDNALKNPTVAAFLKKPSTTIITDKHKGSESAVPDGLDEAEYLTCAEHMLKNCGAVGPGGRMH 314
BLAST of mRNA_C-linearis_contig10.455.1 vs. uniprot
Match:
A0A6H5JAP9_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAP9_9PHAE)
HSP 1 Score: 163 bits (412), Expect = 3.940e-50
Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = -1
Query: 16 MDFAHCKGDWNGTIGAISTKSSNNNIVHLATCIVAKETGDAYRYLIDNALKNPSVAAFLNKPSTTIITDKHKGSESAVPDRLDQAEYLRCGEHMLKNCGAVGP 324
MDF HCKGDW+G IGAIS KS+NNN++ +ATC+ KET DAY YL+ NALKNP +AAFLNKP+TTIITDKHKGSESAVP L AE+L+C EH+LKN G GP
Sbjct: 1 MDFCHCKGDWDGPIGAISVKSANNNVLQVATCLHPKETADAYTYLMSNALKNPEMAAFLNKPTTTIITDKHKGSESAVPRVLQLAEHLKCAEHILKNAGITGP 103
BLAST of mRNA_C-linearis_contig10.455.1 vs. uniprot
Match:
A0A6H5K387_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K387_9PHAE)
HSP 1 Score: 168 bits (425), Expect = 4.480e-49
Identity = 79/109 (72.48%), Postives = 86/109 (78.90%), Query Frame = -1
Query: 7 VACMDFAHCKGDWNGTIGAISTKSSNNNIVHLATCIVAKETGDAYRYLIDNALKNPSVAAFLNKPSTTIITDKHKGSESAVPDRLDQAEYLRCGEHMLKNCGAVGPVRR 333
VACMDF H G+WNG IGAI KSSNNNIV LATCI KE AY YLIDNA +N VA FLNKP+T+II+DKHKGSESAVP RLDQ+E+LRC EHMLKN G VGP R
Sbjct: 225 VACMDFCHMTGEWNGVIGAICVKSSNNNIVQLATCIAPKENAAAYEYLIDNACRNDEVATFLNKPTTSIISDKHKGSESAVPCRLDQSEHLRCVEHMLKNAGTVGPEGR 333
BLAST of mRNA_C-linearis_contig10.455.1 vs. uniprot
Match:
A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)
HSP 1 Score: 102 bits (255), Expect = 3.280e-23
Identity = 49/111 (44.14%), Postives = 64/111 (57.66%), Query Frame = -1
Query: 1 VACMDFAHCKGDWNGTIGAISTKSSNNNIVHLATCIVAKETGDAYRYLIDNALKNPSVAAFLNKPSTTIITDKHKGSESAVPDRLDQAEYLRCGEHMLKNCGAVGPVRRSH 333
V MD A WNG GAIS K +NN I+H+AT + AKE Y L+ A++ P + LN +TT TDKHKGS++AVP E+ RC EH+ + G +GP R H
Sbjct: 229 VFAMDAAAFHDVWNGQFGAISFKDANNKIIHVATMVQAKENAAMYTELLTRAMQFPELKTILNNVNTTCFTDKHKGSDAAVPKICPLTEHRRCVEHLTRTVGCIGPKGRYH 339
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.455.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 4.92e-61 / Id = 83.78 Expect = 3.94e-50 / Id = 70.87 Expect = 4.48e-49 / Id = 72.48 Expect = 3.28e-23 / Id = 44.14 Sequence A0A6H5JAT0_9PHAE A0A6H5JAP9_9PHAE A0A6H5K387_9PHAE A0A6H5L4I0_9PHAE back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 333 Cds size 333 Stop 0 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927325.454219-CDS-C-linearis_contig10:682561..682894 1622927325.454219-CDS-C-linearis_contig10:682561..682894 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 682562..682894 + 1690879627.5264478-CDS-C-linearis_contig10:682561..682894 1690879627.5264478-CDS-C-linearis_contig10:682561..682894 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 682562..682894 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.455.1
>prot_C-linearis_contig10.455.1 ID=prot_C-linearis_contig10.455.1|Name=mRNA_C-linearis_contig10.455.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=111bp
MTSPHRPDSPAVFQHVLPTPKVLRLVQPVRHGRLRSFVLVGDDGRARLVQ back to top mRNA from alignment at C-linearis_contig10:682562..682894+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.455.1 ID=mRNA_C-linearis_contig10.455.1|Name=mRNA_C-linearis_contig10.455.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at C-linearis_contig10:682562..682894+ (Chordaria linearis ClinC8C monoicous)ATGACTTCGCCTCACCGGCCCGACAGCCCCGCAGTTTTTCAACATGTGCT
CCCCACACCGAAGGTACTCCGCCTGGTCCAGCCTGTCCGGCACGGCAGAC
TCCGATCCTTTGTGCTTGTCGGTGATGATGGTCGTGCTCGGCTTGTTCAG
AAATGCCGCCACCGACGGGTTCTTGAGCGCGTTGTCGATGAGGTACCGGT
AGGCGTCACCGGTCTCCTTGGCCACGATACAAGTGGCCAGGTGCACGATG
TTGTTGTTGGAGCTCTTGGTGCTGATCGCCCCGATCGTCCCGTTCCAGTC
TCCCTTGCAGTGTGCAAAATCCATGCAGGCCAC back to top Coding sequence (CDS) from alignment at C-linearis_contig10:682562..682894+
>mRNA_C-linearis_contig10.455.1 ID=mRNA_C-linearis_contig10.455.1|Name=mRNA_C-linearis_contig10.455.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at C-linearis_contig10:682562..682894+ (Chordaria linearis ClinC8C monoicous) back to top