mRNA_C-linearis_contig10.455.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.455.1 vs. uniprot
Match: A0A6H5JAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT0_9PHAE) HSP 1 Score: 200 bits (508), Expect = 4.920e-61 Identity = 93/111 (83.78%), Postives = 100/111 (90.09%), Query Frame = -1 Query: 1 VACMDFAHCKGDWNGTIGAISTKSSNNNIVHLATCIVAKETGDAYRYLIDNALKNPSVAAFLNKPSTTIITDKHKGSESAVPDRLDQAEYLRCGEHMLKNCGAVGPVRRSH 333
V CMDFAH KG+WNGTIGA++TKSS+N IVHLATCIVAKE G+AYRYLIDNALKNP+VAAFL KPSTTIITDKHKGSESAVPD LD+AEYL C EHMLKNCGAVGP R H
Sbjct: 204 VLCMDFAHMKGEWNGTIGAMTTKSSDNTIVHLATCIVAKENGNAYRYLIDNALKNPTVAAFLKKPSTTIITDKHKGSESAVPDGLDEAEYLTCAEHMLKNCGAVGPGGRMH 314
BLAST of mRNA_C-linearis_contig10.455.1 vs. uniprot
Match: A0A6H5JAP9_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAP9_9PHAE) HSP 1 Score: 163 bits (412), Expect = 3.940e-50 Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = -1 Query: 16 MDFAHCKGDWNGTIGAISTKSSNNNIVHLATCIVAKETGDAYRYLIDNALKNPSVAAFLNKPSTTIITDKHKGSESAVPDRLDQAEYLRCGEHMLKNCGAVGP 324
MDF HCKGDW+G IGAIS KS+NNN++ +ATC+ KET DAY YL+ NALKNP +AAFLNKP+TTIITDKHKGSESAVP L AE+L+C EH+LKN G GP
Sbjct: 1 MDFCHCKGDWDGPIGAISVKSANNNVLQVATCLHPKETADAYTYLMSNALKNPEMAAFLNKPTTTIITDKHKGSESAVPRVLQLAEHLKCAEHILKNAGITGP 103
BLAST of mRNA_C-linearis_contig10.455.1 vs. uniprot
Match: A0A6H5K387_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K387_9PHAE) HSP 1 Score: 168 bits (425), Expect = 4.480e-49 Identity = 79/109 (72.48%), Postives = 86/109 (78.90%), Query Frame = -1 Query: 7 VACMDFAHCKGDWNGTIGAISTKSSNNNIVHLATCIVAKETGDAYRYLIDNALKNPSVAAFLNKPSTTIITDKHKGSESAVPDRLDQAEYLRCGEHMLKNCGAVGPVRR 333
VACMDF H G+WNG IGAI KSSNNNIV LATCI KE AY YLIDNA +N VA FLNKP+T+II+DKHKGSESAVP RLDQ+E+LRC EHMLKN G VGP R
Sbjct: 225 VACMDFCHMTGEWNGVIGAICVKSSNNNIVQLATCIAPKENAAAYEYLIDNACRNDEVATFLNKPTTSIISDKHKGSESAVPCRLDQSEHLRCVEHMLKNAGTVGPEGR 333
BLAST of mRNA_C-linearis_contig10.455.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE) HSP 1 Score: 102 bits (255), Expect = 3.280e-23 Identity = 49/111 (44.14%), Postives = 64/111 (57.66%), Query Frame = -1 Query: 1 VACMDFAHCKGDWNGTIGAISTKSSNNNIVHLATCIVAKETGDAYRYLIDNALKNPSVAAFLNKPSTTIITDKHKGSESAVPDRLDQAEYLRCGEHMLKNCGAVGPVRRSH 333
V MD A WNG GAIS K +NN I+H+AT + AKE Y L+ A++ P + LN +TT TDKHKGS++AVP E+ RC EH+ + G +GP R H
Sbjct: 229 VFAMDAAAFHDVWNGQFGAISFKDANNKIIHVATMVQAKENAAMYTELLTRAMQFPELKTILNNVNTTCFTDKHKGSDAAVPKICPLTEHRRCVEHLTRTVGCIGPKGRYH 339 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.455.1 >prot_C-linearis_contig10.455.1 ID=prot_C-linearis_contig10.455.1|Name=mRNA_C-linearis_contig10.455.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=111bp MTSPHRPDSPAVFQHVLPTPKVLRLVQPVRHGRLRSFVLVGDDGRARLVQback to top mRNA from alignment at C-linearis_contig10:682562..682894+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.455.1 ID=mRNA_C-linearis_contig10.455.1|Name=mRNA_C-linearis_contig10.455.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at C-linearis_contig10:682562..682894+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:682562..682894+ >mRNA_C-linearis_contig10.455.1 ID=mRNA_C-linearis_contig10.455.1|Name=mRNA_C-linearis_contig10.455.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at C-linearis_contig10:682562..682894+ (Chordaria linearis ClinC8C monoicous)back to top |