Homology
BLAST of mRNA_C-linearis_contig10.454.1 vs. uniprot
Match:
A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)
HSP 1 Score: 145 bits (367), Expect = 4.780e-42
Identity = 63/93 (67.74%), Postives = 79/93 (84.95%), Query Frame = 1
Query: 1 SSTRKFMAGNPLWPCPSDICAVGFLKEVAKSNGGTFAPCDQKESKDDSTCQVSCTVLTVRNSDPALCELCLSAVGGTPSLGVTSGKKTSQGRD 279
+S RKF+AGNPLWPCPS +C G LK V K+NGG F+PCDQK+S+D +TCQVSC++L+ R SDP +C+LCL++VGGTPSLGV SG+K SQGRD
Sbjct: 16 TSKRKFIAGNPLWPCPSIVCVPGLLKAVPKTNGGLFSPCDQKDSQDSTTCQVSCSILSARGSDPPICQLCLTSVGGTPSLGVLSGEKNSQGRD 108
BLAST of mRNA_C-linearis_contig10.454.1 vs. uniprot
Match:
A0A6H5JLP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP4_9PHAE)
HSP 1 Score: 130 bits (326), Expect = 6.650e-35
Identity = 60/92 (65.22%), Postives = 72/92 (78.26%), Query Frame = 1
Query: 1 SSTRKFMAGNPLWPCPSDICAVGFLKEVAKSNGGTFAPCDQKESKDDSTCQVSCTVLTVRNSDPALCELCLSAVGGTPSLGVTSGKKTSQGR 276
SS RKF+AGNPLWPCPS+ C G LK++ K+ GG F PCDQK+S D +TCQVSC+ L+ R +P CELCL+ VGGTPSLGV SG+KT QGR
Sbjct: 17 SSKRKFLAGNPLWPCPSNYCD-GLLKKIPKTKGGFFTPCDQKQSNDPNTCQVSCSFLSERGPNPVKCELCLTPVGGTPSLGVLSGEKTDQGR 107
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.454.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.78e-42 / Id = 67.74 Expect = 6.65e-35 / Id = 65.22 Sequence A0A6H5JXZ5_9PHAE A0A6H5JLP4_9PHAE back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 82.4 Seed ortholog evalue 1.1e-13 Seed eggNOG ortholog 2880.D7G4Z8 Hectar predicted targeting category other localisation EggNOG OGs 2CZK4@1,2SARG@2759 Best tax level Eukaryota Best eggNOG OG NA|NA|NA Exons 1 Model size 280 Cds size 261 Stop 0 Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927329.626629-UTR-C-linearis_contig10:495118..495136 1622927329.626629-UTR-C-linearis_contig10:495118..495136 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 495119..495136 + 1690879629.5220106-UTR-C-linearis_contig10:495118..495136 1690879629.5220106-UTR-C-linearis_contig10:495118..495136 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 495119..495136 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927329.636994-CDS-C-linearis_contig10:495136..495397 1622927329.636994-CDS-C-linearis_contig10:495136..495397 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 495137..495397 + 1690879629.532894-CDS-C-linearis_contig10:495136..495397 1690879629.532894-CDS-C-linearis_contig10:495136..495397 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 495137..495397 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.454.1
>prot_C-linearis_contig10.454.1 ID=prot_C-linearis_contig10.454.1|Name=mRNA_C-linearis_contig10.454.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=87bp
MAGNPLWPCPSDICAVGFLKEVAKSNGGTFAPCDQKESKDDSTCQVSCTV back to top mRNA from alignment at C-linearis_contig10:495119..495397+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.454.1 ID=mRNA_C-linearis_contig10.454.1|Name=mRNA_C-linearis_contig10.454.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at C-linearis_contig10:495119..495397+ (Chordaria linearis ClinC8C monoicous)TCTTCCACTCGGAAGTTT ATGGCCGGCAACCCTCTTTGGCCGTGCCCAAG
CGATATCTGCGCTGTCGGATTTTTGAAAGAGGTCGCCAAGTCCAACGGCG
GCACATTTGCGCCCTGCGACCAAAAGGAGTCCAAGGACGACTCCACCTGC
CAGGTGTCCTGCACGGTGCTGACCGTGCGCAACTCCGATCCAGCTCTCTG
TGAGCTGTGCCTTTCCGCCGTGGGAGGAACGCCGTCTCTCGGAGTCACTT
CCGGCAAGAAGACCTCCCAGGGTCGCGAC back to top Coding sequence (CDS) from alignment at C-linearis_contig10:495119..495397+
>mRNA_C-linearis_contig10.454.1 ID=mRNA_C-linearis_contig10.454.1|Name=mRNA_C-linearis_contig10.454.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at C-linearis_contig10:495119..495397+ (Chordaria linearis ClinC8C monoicous) back to top