mRNA_C-linearis_contig10.454.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.454.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE) HSP 1 Score: 145 bits (367), Expect = 4.780e-42 Identity = 63/93 (67.74%), Postives = 79/93 (84.95%), Query Frame = 1 Query: 1 SSTRKFMAGNPLWPCPSDICAVGFLKEVAKSNGGTFAPCDQKESKDDSTCQVSCTVLTVRNSDPALCELCLSAVGGTPSLGVTSGKKTSQGRD 279
+S RKF+AGNPLWPCPS +C G LK V K+NGG F+PCDQK+S+D +TCQVSC++L+ R SDP +C+LCL++VGGTPSLGV SG+K SQGRD
Sbjct: 16 TSKRKFIAGNPLWPCPSIVCVPGLLKAVPKTNGGLFSPCDQKDSQDSTTCQVSCSILSARGSDPPICQLCLTSVGGTPSLGVLSGEKNSQGRD 108
BLAST of mRNA_C-linearis_contig10.454.1 vs. uniprot
Match: A0A6H5JLP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP4_9PHAE) HSP 1 Score: 130 bits (326), Expect = 6.650e-35 Identity = 60/92 (65.22%), Postives = 72/92 (78.26%), Query Frame = 1 Query: 1 SSTRKFMAGNPLWPCPSDICAVGFLKEVAKSNGGTFAPCDQKESKDDSTCQVSCTVLTVRNSDPALCELCLSAVGGTPSLGVTSGKKTSQGR 276
SS RKF+AGNPLWPCPS+ C G LK++ K+ GG F PCDQK+S D +TCQVSC+ L+ R +P CELCL+ VGGTPSLGV SG+KT QGR
Sbjct: 17 SSKRKFLAGNPLWPCPSNYCD-GLLKKIPKTKGGFFTPCDQKQSNDPNTCQVSCSFLSERGPNPVKCELCLTPVGGTPSLGVLSGEKTDQGR 107 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.454.1 >prot_C-linearis_contig10.454.1 ID=prot_C-linearis_contig10.454.1|Name=mRNA_C-linearis_contig10.454.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=87bp MAGNPLWPCPSDICAVGFLKEVAKSNGGTFAPCDQKESKDDSTCQVSCTVback to top mRNA from alignment at C-linearis_contig10:495119..495397+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.454.1 ID=mRNA_C-linearis_contig10.454.1|Name=mRNA_C-linearis_contig10.454.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at C-linearis_contig10:495119..495397+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:495119..495397+ >mRNA_C-linearis_contig10.454.1 ID=mRNA_C-linearis_contig10.454.1|Name=mRNA_C-linearis_contig10.454.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at C-linearis_contig10:495119..495397+ (Chordaria linearis ClinC8C monoicous)back to top |