mRNA_C-linearis_contig10.451.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: A0A6H5K1E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1E2_9PHAE) HSP 1 Score: 186 bits (473), Expect = 5.590e-54 Identity = 117/135 (86.67%), Postives = 121/135 (89.63%), Query Frame = 1 Query: 1 MKFATMMVALVAAVASLAVG-DAFVMPTAAPARLARNAGA-ALAPTTSQPAPSRSAGASAVGALNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRATNLRKDKIQRSRDRKANEHKF 399
MK ATMMVALVAA+ASLA G +AFVMP A A RNAG ALAP SQPAPSRS+GASAVGALNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRA NLRKDKIQRSR+RKANEHKF
Sbjct: 1 MKLATMMVALVAAIASLAAGGNAFVMPPAGVA--GRNAGRQALAPAPSQPAPSRSSGASAVGALNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRAMNLRKDKIQRSRERKANEHKF 133
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: A0A835YQE4_9STRA (Ribosomal protein S21-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQE4_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 5.430e-10 Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 1 Query: 184 LNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRATNLRKDKIQRSRDRK-ANEH 393
+ VKIV+G+ E+VE+AL RF+R V+RSGH+QELR++R FET ERKKRK ++ +I RS+ RK AN++
Sbjct: 44 MEVKIVVGDGESVESALNRFKRAVARSGHMQELRYRRYFETTQERKKRKATLARKRARIARSKARKFANDY 114
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: A0A835ZBS8_9STRA (Chloroplast 30S ribosomal protein 21 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBS8_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 9.610e-10 Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 49 LAVGDAFVMPTAAPARLARNAGAALAPTTSQPAPSRSAGASAVGALNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRATNLRKDKIQRSRDRK 381
LAV +AF M + A ++L + AA T S + VKIV+G+ E+VE+AL RF+R V RSGH+QEL+++R FET ERKKRK ++ +I RS+ RK
Sbjct: 12 LAVSNAFTMTSFAGSQLQQRIAAARPSTLS---------------MEVKIVVGDGESVESALTRFKRAVGRSGHMQELKYRRYFETTQERKKRKATLARKRARIARSKMRK 107
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: A0A7S1XR96_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XR96_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 1.110e-5 Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1 Query: 181 ALNV-KIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRATNLRKDKIQRSRDRKANEH 393
ALNV KI +GEEE ++ AL RF+R+V RSGH+Q LR +R FE E+KKR++ R+ +I R +++K H
Sbjct: 27 ALNVVKINVGEEEPIDDALKRFKRSVLRSGHMQLLRRRRTFEKNPEKKKREQGEKERRGRIMRLKNQKYKVH 98
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: A0A7S1U4W2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4W2_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 1.440e-5 Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1 Query: 181 ALNV-KIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRATNLRKDKIQRSRDRKANEH 393
ALNV KI +GEEE ++ AL RF+R+V RSGH+Q LR +R FE E+KKR++ R+ +I R +++K H
Sbjct: 38 ALNVVKINVGEEEPIDDALKRFKRSVLRSGHMQLLRRRRTFEKNPEKKKREQGEKERRGRIMRLKNQKYKVH 109
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: R7QFR2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFR2_CHOCR) HSP 1 Score: 52.0 bits (123), Expect = 3.370e-5 Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 1 Query: 184 LNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRATNLRKDKIQR 366
++V +++G+ E VE+A+ RF++ VS+SGHL ELR +R FET E++ RK A RK KI R
Sbjct: 1 MDVTVIVGDNEPVESAIRRFKKDVSKSGHLFELRRRRYFETNTEKRIRKAAAARRKAKIAR 61
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: A0A7S2ZBU8_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZBU8_9RHOD) HSP 1 Score: 52.8 bits (125), Expect = 5.240e-5 Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 1 Query: 184 LNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRATNLRKDKIQRS-RDR 378
+ V + L + EN+E AL RF+R V RSGHL E+R ++NFET ER+ RK A + ++ +I R+ RDR
Sbjct: 48 MEVAVNLEDGENIEQALRRFKREVLRSGHLMEIRRRKNFETSTERRIRKEAMSKKRQRIARNARDR 113
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: A0A2V3J354_9FLOR (30S ribosomal protein S21 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J354_9FLOR) HSP 1 Score: 52.0 bits (123), Expect = 5.900e-5 Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 1 Query: 184 LNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRATNLRKDKIQRS 369
+ V +++G+ E +E AL RF++ V++SGHL ELR +R FET ER+ RK A RK K+ R+
Sbjct: 22 MEVTVIIGDSEPIEGALRRFKKEVTKSGHLFELRRRRYFETNTERRIRKAAAAKRKAKLSRN 83
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: UPI00037B4196 (30S ribosomal protein S21 n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI00037B4196) HSP 1 Score: 50.8 bits (120), Expect = 6.540e-5 Identity = 26/49 (53.06%), Postives = 40/49 (81.63%), Query Frame = 1 Query: 193 KIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRAT 339
++V+GE EN+E+AL RF+R VSRSG L +++ +R+FET E++KRK +T
Sbjct: 3 QVVIGENENIESALRRFKRQVSRSGILADVKSRRHFETPLEKRKRKAST 51 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.451.1 >prot_C-linearis_contig10.451.1 ID=prot_C-linearis_contig10.451.1|Name=mRNA_C-linearis_contig10.451.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=134bp MKFATMMVALVAAVASLAVGDAFVMPTAAPARLARNAGAALAPTTSQPAPback to top mRNA from alignment at C-linearis_contig10:421882..428703- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.451.1 ID=mRNA_C-linearis_contig10.451.1|Name=mRNA_C-linearis_contig10.451.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6822bp|location=Sequence derived from alignment at C-linearis_contig10:421882..428703- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:421882..428703- >mRNA_C-linearis_contig10.451.1 ID=mRNA_C-linearis_contig10.451.1|Name=mRNA_C-linearis_contig10.451.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at C-linearis_contig10:421882..428703- (Chordaria linearis ClinC8C monoicous)back to top |