Homology
BLAST of mRNA_C-linearis_contig10.449.1 vs. uniprot
Match:
A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)
HSP 1 Score: 100 bits (249), Expect = 7.310e-20
Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 2
Query: 353 NTDVLSHLLDFVAEDQYLFFAAVSRAWTSVWRAAQRPAATRQVTPDTSESQLRESLEAGLPLDKAQLSAALARHGHLELLQLARERGCAWGAVTCSAAA 649
N D+L ++ FVAE Q+LFFA VSRAW W RPA T VT D+S SQLR S E GLP D+ +L AA+AR G+LELL+ AR GCAW +T S AA
Sbjct: 60 NVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGC--RPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCAWNGLTFSEAA 156
BLAST of mRNA_C-linearis_contig10.449.1 vs. uniprot
Match:
D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI)
HSP 1 Score: 92.4 bits (228), Expect = 4.420e-17
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 2
Query: 359 DVLSHLLDFVAEDQYLFFAAVSRAWTSVWRAAQRPAATRQVTPDTSESQLRESLEAGLPLDKAQLSAALARHGHLELLQLARERGCAWGAVTCSAAA 649
DV+SH +FV +DQ+LFFA+VSRAW WR RP +TR +TPDTS SQLR S++ GL + A+A G L+LL+ AR G W +TC AA
Sbjct: 10 DVISHASEFVHDDQFLFFASVSRAWRGAWRG--RPTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAARALGFRWDKMTCWKAA 104
BLAST of mRNA_C-linearis_contig10.449.1 vs. uniprot
Match:
D7FH77_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH77_ECTSI)
HSP 1 Score: 83.2 bits (204), Expect = 6.820e-14
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 2
Query: 326 PTAVGLAITNTDVLSHLLDFVAEDQYLFFAAVSRAWTSVWRAAQRPAATRQVTPDTSESQLRESLEAGLPLDKAQLSAALARHGHLELLQLARERGCAWGAVT 634
P V + N D+L L+ FVA++ +LFF V R W + W RP TR T D + +QL+ + GL +L AA+AR G ++LL+LAR+ GC WGA T
Sbjct: 3 PGIVPSVLNNPDILGCLISFVADESFLFFGPVCRDWRAAW--GNRPTTTRIATSDLTPTQLQRGFDCGLTRTNPELCAAIARLGDVDLLELARDNGCRWGAST 103
BLAST of mRNA_C-linearis_contig10.449.1 vs. uniprot
Match:
A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)
HSP 1 Score: 73.9 bits (180), Expect = 2.980e-11
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 2
Query: 359 DVLSHLLDFVAEDQYLFFAAVSRAWTSVWRAAQRPAATRQVTPDTSESQLRESLEAGLPLDKAQLSAALARHGHLELLQLARERGCAWGAVTC 637
D++S + +FV ++QYLFFA+VSR W VW +RP T+ +T DTS QL S E GL A + +A G L+LL+ AR GC W TC
Sbjct: 8 DIVSTVAEFVDDNQYLFFASVSRGWRDVW--GKRPTVTKALTADTSVPQLSLSFECGLRRTAA-VCETVAGLGRLDLLRRARAMGCQWNENTC 97
BLAST of mRNA_C-linearis_contig10.449.1 vs. uniprot
Match:
D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)
HSP 1 Score: 74.7 bits (182), Expect = 8.270e-11
Identity = 43/93 (46.24%), Postives = 57/93 (61.29%), Query Frame = 2
Query: 359 DVLSHLLDFVAEDQYLFFAAVSRAWTSVWRAAQRPAATRQVTPDTSESQLRESLEAGLPLDKAQLSAALARHGHLELLQLARERGCAWGAVTC 637
D++S + +FV ++QYLFFA+VSR W VW +RP T+ +T DTS SQL S E GL A + +A G L+LL+ AR GC W TC
Sbjct: 10 DIVSTVGEFVDDNQYLFFASVSRGWRDVW--GKRPTVTKALTADTSVSQLSLSFECGLRRTAA-VCETVAGLGRLDLLRRARAMGCPWNENTC 99
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.449.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 5
0 1 Expect = 7.31e-20 / Id = 56.57 Expect = 4.42e-17 / Id = 50.52 Expect = 6.82e-14 / Id = 41.75 Expect = 2.98e-11 / Id = 45.16 Expect = 8.27e-11 / Id = 46.24 Sequence A0A6H5KPZ6_9PHAE D8LDD9_ECTSI D7FH77_ECTSI A0A6H5L0J7_9PHAE D7FMS7_ECTSI back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 68.9 Seed ortholog evalue 4.7e-09 Seed eggNOG ortholog 2880.D7FJY0 KEGG ko ko:K06052 KEGG Pathway ko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224 Hectar predicted targeting category other localisation EggNOG OGs 2AMK4@1,2RZCC@2759 Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko04090 Exons 2 Model size 1801 Cds size 954 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927322.2566488-UTR-C-linearis_contig10:408902..409505 1622927322.2566488-UTR-C-linearis_contig10:408902..409505 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 408903..409505 - 1690879625.7625678-UTR-C-linearis_contig10:408902..409505 1690879625.7625678-UTR-C-linearis_contig10:408902..409505 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 408903..409505 - 1622927322.2926915-UTR-C-linearis_contig10:412253..412497 1622927322.2926915-UTR-C-linearis_contig10:412253..412497 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 412254..412497 - 1690879625.7958827-UTR-C-linearis_contig10:412253..412497 1690879625.7958827-UTR-C-linearis_contig10:412253..412497 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 412254..412497 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927322.2664757-CDS-C-linearis_contig10:409505..410417 1622927322.2664757-CDS-C-linearis_contig10:409505..410417 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 409506..410417 - 1690879625.7757072-CDS-C-linearis_contig10:409505..410417 1690879625.7757072-CDS-C-linearis_contig10:409505..410417 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 409506..410417 - 1622927322.2806287-CDS-C-linearis_contig10:412211..412253 1622927322.2806287-CDS-C-linearis_contig10:412211..412253 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 412212..412253 - 1690879625.7851439-CDS-C-linearis_contig10:412211..412253 1690879625.7851439-CDS-C-linearis_contig10:412211..412253 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 412212..412253 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.449.1
>prot_C-linearis_contig10.449.1 ID=prot_C-linearis_contig10.449.1|Name=mRNA_C-linearis_contig10.449.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=318bp
MGPQQQGAGDGLAEGTASSSTDGAPSAPTAVGLAITNTDVLSHLLDFVAE back to top mRNA from alignment at C-linearis_contig10:408903..412497-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.449.1 ID=mRNA_C-linearis_contig10.449.1|Name=mRNA_C-linearis_contig10.449.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3595bp|location=Sequence derived from alignment at C-linearis_contig10:408903..412497- (Chordaria linearis ClinC8C monoicous)CCTCTCTCGTGAGTCTCTTGTGCCGCTCACATATCAGTCGACTAGGACCC
TACGCTTCATCCAAGCGAACGACCTGTCCCTTCTTGATTCAGCGGGGCAG
CAGGCAGCCCCTGCGAACCAGGGAGGAGAGATGTCGACTGGTGTCTAGCG
GAAATCTCGCTCTTGTCCGCACACACACACACACGACACACAGGATCTAG
ACTACTTCTAGACAGCAGTAGAGAGCTGGGTTTGGAGATTGGAG ATGGGG
CCACAGCAACAAGGAGCCGGAGACGGGTTAGCAGAG GTGAGTCGGTACTG
GAATGGTACTTCGACAATCCCTCAACCGTGGTGGCTGTGTATTGTCATCT
CCGTCGCTGCAGAGAGCAGGAGCCCGCGACACATGAATCCTGAATCCGAG
TTGGAGTTGCGCCGACGTTTTGGAGGTGCATCCGCTCCACAACCTCCTAG
CAAAAGCACCACCGCCGCATGGCATTGCCACACAACCTTTCAAGCGTGAC
ACTTTGTTGATTGTTAGCTCGAGCCAGGGGAGAGCTGTCATATGGTAGAA
CGGCCGCTCGCCGCAGCCGAGCAACAACTTCAAACAATCACACCACAGCA
AGCAGTCGTCGTGCCGTCTACCAGGTGTCGTCTACTGCTGTACCTATGTA
TGTACCAGCACCAAGATCCATAGATCCCGAGACTACAGTGGTAGACTGGT
TACTTCGTACAGTGCCAATATATCGCTGACAACGGCACAGGCGCGCCACA
CTTCCTTTCTTTGAGGGACTGATGGAGTCGCTGGGTTGGGTACCCCGCCG
ATGATCACCCGTGAGTATTAGAAACAGCAAGCAGCGTTGTGGGTTTGTTG
CGGCCACCGATTTTTAGGGGCACACGCGTTCGTTACTGCGTTGTCCTGGG
GTATACGTGTATGAGTCTAGTCTGCGTTGGGTTAGCGTCGACACGCGCCC
CTCCTCTCGATCGTCTCTTGAGAGCTTAATCCAGAGCTTTGCACAGCATC
TGCTTATCTTCTGACCAAGCACCTAACTTCCAGGAGGACGCCGCATCGAA
CTCGGACGGTCAGTTCGTGATCTTTGTCTTGTCATCTGCACGATGCTATA
GAGCATCAAGGTCCGACACATTACACATCCTCGGTCTAGACTGTTGGTGT
GCCTCGAGCAGTACACGTAGTTATTGTCTTTCTTTCAATCATGTCATGAA
GACCCCAAGCGACAACCACGAGACCGTAACAGGTTGCCTTGAGTTTCGCC
GGAGTTTCGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCATACAC
ATCTCTCCCATACACACCCATAACAAAGAGGTGACCGGCTTACTCAGAAC
CGTACCACTTGCATCGAATGGGGATCTTGTAGCAGTCAGGACAGGACAGC
AGTATCTAGTCGACCGCGGCCGGTGCTTGTTGCTTCGCCCTGTTGAGTTT
GCGAGGCATCACCGGTATGCGCCCCAGTGTCGTGAGTCTGAATCTATCCA
CTCTGTGCGGAATGTACATATATACAGCACTTGCACACCACACCACCGCA
CCACGTTCGAAAAACGCTTGGAGTTTCGCCCTCGGGCGTCGGGCAGCGTT
TGGTGCCTGCCTGGTATTTTCGATGAGAATAAACTGGGAGCGCCCGTTTG
ACGTTCACACACACGGTGCCCCCGGCTTCTTTTTCGTCCTCTGTTGCCCC
ACGCGTGTAGATGGGGAGGCACGGCTCACCTTAATTCGATTTCAAAAACA
TAATCCCCGCATAGTGCCAGCCAGCGGTACAACACCTCCGATTCGACCAA
TCTTATCCCCAAGAGCTCCCCTGGGCCCCCGCTGGCAAGAAACGTATGAC
TCGCGGCTCGATTGAGTTTTCCGTCACCACTTTTCGAACGTAGCGCTTGG
GATAAGGGTTGAATGTAAGATCCACGATCGAGCCACATGCATGCTTCTTA
GCCCAACTTTCTTATTTTTCTTATTTTCTTACGACAGTTTCTCTTTTACA
GCGGGCGCCCTCCGTACTGCGAACACCTTCCTTTCGGCTCGTTTGCCCCC
TTCCCTCAAAACGAATCGGGCACCAAGCAGGGCACCGCCAGCTCATCCAC
CGATGGAGCACCAAGCGCCCCAACAGCAGTCGGCCTCGCCATCACCAACA
CGGACGTTTTGAGCCACCTCCTAGACTTCGTGGCAGAGGACCAATATCTC
TTCTTCGCCGCGGTCTCGCGAGCCTGGACGTCGGTGTGGAGGGCTGCCCA
ACGCCCCGCGGCCACGAGGCAAGTCACGCCAGACACGTCCGAGTCTCAGC
TGCGAGAGAGTCTCGAGGCCGGCTTGCCTCTAGACAAGGCACAGCTGTCG
GCAGCCCTCGCACGCCACGGGCATCTAGAGCTGCTGCAGCTGGCCAGGGA
GCGCGGCTGCGCGTGGGGCGCGGTGACCTGTTCCGCCGCCGCCGGGGCGG
GACACCTGGAGCTCCTCCAGTGGTGCAAGTACAACGGGTGCCCATGGGAC
GACCGCACGCTGACAGAGGCCGCGCGCGGCGACCACGCGGAGGTCCTGGA
GTGGGCGAGGATGTTCGGCTGCGAGGTGAGCATGGGCGTCCCCACCGCGG
CGGCGGGGGCGGGGAACCTGAACCTCCTCAAGTACTTGATCCAGGACGGG
TTTCCGGTTTGTGCGGGGGCTTGCGGCGCGGCGGCTAAATCCGGCCACCT
GGAAATCCTGGAGTACTTGGTCGAGAACGAGTGCCCTGTCGACGAGATGA
CGCTCTTTGGGGTCGTTCTCAACGGCCAGCTAGCTGTCGTGGAGTGGGCG
CTCGGGGAAGGGGTCGAGTTTAACGACCTCGGGGAGTACGCCTTCTGCGA
CGCCGTGAAGAAGGGCCGATTGGCGGTGGTCCGTCTTCTGCATCGGCACG
GGTGTCCGTGGGACGAGGCGAGCTGTTTGGCGGCGGCGATCGAGGGTGGT
CACGAGGAAATCGCTAGCTGGATAAGGGAGAACCGATCGTAA ACGTTCGG
GCTTGCATCTTGCGTGTGTGTTTGTGGCCTTCAAAAACAGATGGTACTGC
ACACGAGATTATTAGCATTTTGTCTGCAGATTTTAACTTTTCTCGCAAGG
CAACTTCATACTCCCATAAAAGCCGGTGTTCGGGCGGACCGAGCGTGTTG
CCTGTCTCTCTTGCTTTCTCCCGTCACGCGCCACAAGGGTTTGCTTCTGA
GCTTTATTGACTCGTTCAAGCGGCGTGCCTGCTTGCCCTGTTGGTTGCAA
CCACCCTGTAGCTTTTGTCCAAGTACTTCAAAGCCTGCGTTTTTTTGCCT
GCTGGTTGCCAATCTTTCGCTGGGAGTTTTCAACGATTGCGTGGGTGGTA
AGGATATCTGTTGTGGGTGCAGCAGGGTCTTGACGTTGAGATGCTTTCCG
TCAGTGCTCGCCTTCACGGCACGGTTGGAGGTTGGGGATAAAACCTACGG
GTGGATGCACCGACCACACAACTATTGGCTCTTCCTTTTTGTTTTCATGT
AGTATGTTTTGCCCGTTTGGTACAGCTTTGCGTCGAGAACTTCCTCCGGG
ATCGGAACGTTTGTCGCCCCCGGTGCAATTCAAGGCGCCACTTTC back to top Coding sequence (CDS) from alignment at C-linearis_contig10:408903..412497-
>mRNA_C-linearis_contig10.449.1 ID=mRNA_C-linearis_contig10.449.1|Name=mRNA_C-linearis_contig10.449.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1908bp|location=Sequence derived from alignment at C-linearis_contig10:408903..412497- (Chordaria linearis ClinC8C monoicous) back to top