Homology
BLAST of mRNA_C-linearis_contig10.448.1 vs. uniprot
Match:
A0A6H5JP54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP54_9PHAE)
HSP 1 Score: 79.0 bits (193), Expect = 1.750e-11
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 2
Query: 404 LAFHRMGVRQRNAPPSPPLMSALPPKRPRSPGGDHDDDPSHGKRPRSG 547
LAFHRMGVRQRN+PPSPPL+SALPPKRPR+PG DDP HGKRPR+G
Sbjct: 500 LAFHRMGVRQRNSPPSPPLVSALPPKRPRTPG----DDPGHGKRPRNG 543
BLAST of mRNA_C-linearis_contig10.448.1 vs. uniprot
Match:
D7FH94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH94_ECTSI)
HSP 1 Score: 68.6 bits (166), Expect = 5.680e-11
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 2
Query: 419 MGVRQRNAPPSPPLMSALPPKRPRSPGGDHDDDPSHGKRPRSG 547
MGVRQRN+PPSPPL+SALPPKRPR+PG DDP HGKRPR+G
Sbjct: 1 MGVRQRNSPPSPPLVSALPPKRPRTPG----DDPGHGKRPRNG 39
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.448.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.75e-11 / Id = 81.25 Expect = 5.68e-11 / Id = 79.07 Sequence A0A6H5JP54_9PHAE D7FH94_ECTSI
Match Name E-value Identity Description
A0A6H5JP54_9PHAE 1.750e-11 81.25 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D7FH94_ECTSI 5.680e-11 79.07 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category no signal peptide or anchor Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-13_004530.1 Exons 3 Model size 2509 Cds size 132 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927328.4991884-UTR-C-linearis_contig10:384333..384672 1622927328.4991884-UTR-C-linearis_contig10:384333..384672 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 384334..384672 + 1690879629.1018515-UTR-C-linearis_contig10:384333..384672 1690879629.1018515-UTR-C-linearis_contig10:384333..384672 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 384334..384672 + 1622927328.5131226-UTR-C-linearis_contig10:384729..384808 1622927328.5131226-UTR-C-linearis_contig10:384729..384808 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 384730..384808 + 1690879629.1128614-UTR-C-linearis_contig10:384729..384808 1690879629.1128614-UTR-C-linearis_contig10:384729..384808 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 384730..384808 + 1622927328.5502725-UTR-C-linearis_contig10:385730..387689 1622927328.5502725-UTR-C-linearis_contig10:385730..387689 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 385731..387689 + 1690879629.141831-UTR-C-linearis_contig10:385730..387689 1690879629.141831-UTR-C-linearis_contig10:385730..387689 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 385731..387689 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927328.5271537-CDS-C-linearis_contig10:384808..384823 1622927328.5271537-CDS-C-linearis_contig10:384808..384823 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 384809..384823 + 1690879629.1247292-CDS-C-linearis_contig10:384808..384823 1690879629.1247292-CDS-C-linearis_contig10:384808..384823 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 384809..384823 + 1622927328.5396132-CDS-C-linearis_contig10:385613..385730 1622927328.5396132-CDS-C-linearis_contig10:385613..385730 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 385614..385730 + 1690879629.1325414-CDS-C-linearis_contig10:385613..385730 1690879629.1325414-CDS-C-linearis_contig10:385613..385730 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 385614..385730 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.448.1
>prot_C-linearis_contig10.448.1 ID=prot_C-linearis_contig10.448.1|Name=mRNA_C-linearis_contig10.448.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=44bp
MGVRQRNAPPSPPLMSALPPKRPRSPGGDHDDDPSHGKRPRSG* back to top mRNA from alignment at C-linearis_contig10:384334..387689+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.448.1 ID=mRNA_C-linearis_contig10.448.1|Name=mRNA_C-linearis_contig10.448.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3356bp|location=Sequence derived from alignment at C-linearis_contig10:384334..387689+ (Chordaria linearis ClinC8C monoicous)GGAGGAGGAGGAGGACCCCAAGGCCTCGCCCGGGAGATGCAGAGACAGAG
ACAGAGGCAGAGCCGGAGCCGGGGTTGGCATCGGCAGCGAAGGCGCCGGC
ACGGAGGCGTATTCGGTTTCGTCGCGTTCTTGGTCGTCCCCGCGTCATCA
GGCGGCCGTGCCACACCTCCCCGTCGCCAAGCGGCAGCGGTGCCATCAGG
AAGGCGGTGGGAGCGGCAGCGGCGGCGGCGGCGGCGGTTGCGGCGGTGGC
AGCAGGAGAGAGAGGGAGTCGTGTCACCAGGTTGTGTTCCTGGACCAACA
GCGTCACCAGCAGCAGCAGCAGCACCAGCAGCAGCACCA GCAGCACCAGC
AGGAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGAGGCAGAGGGAA
CAGGAGGAGGAAGAGCAGGAGCAGGCGAGGAGGCAGGAGGAGCAGGAGCT
GCAGCTGCAGTTGGCCTTTCACCGG ATGGGCGTGCGGCAG GTAAAGTACA
GGTCATGTGATGATTTTCTTGTGTTTTCATCTTTTTCTCTTGTCTTTCTG
ACCATGCATACGTACCTCTCTGGGTGCTTTTTGCGGTGGTGTACCTTTCT
ACGCGACCTCTGCGGCGTTAAGGTTCTCTCTGCACGCATGTCTTGTTGTT
GTTACGGCTTGCGCATGTGCGGTGTGTTGCGTGGCCTGTTTTTGTGGAGG
GGTGAGAAAGCCAAGAACGAAAACACACCCGGCGAGCATCCTGTCTGCCT
TGCCAAGAAGCGACAGCACGGATGTCTTGACCATGGCAGCTGGCCGAAGC
CGTGGGATGGGATGGGATGAGACCCGGTTTTCATTCTATTTCTTGTCCTT
CCCCCCCCCCGTCGGAGTCGCTCTTTTTGTTTAGCCCGCACCCTCTGCTG
TGTTTGGTCAACTGGACAAAAAAAAAACCGTATGGCACAAACAACAGTCA
AGGACGTGTCTTGACAAGCCGCATTTCTTTTTTTGTTGTCGAGAAGGGTA
GGGCAAAATCTCCATGACATGTCGACAAGGGTAGGACAGAATCTCGATGA
CATGCCTCCGCTTACGCTCGATTTCGATTAAACCCTTGGGCAGATTTTAG
ACGTATTATACCCCCCCCGAACCCTGTTTTTCTCGTCCTGCCCTTCCGTG
CCCCCGCCCACATCCCTAACGGTTACCTTTTCCCGTTTGTTGTTGGTTGT
TGGTTGTTGTTGTTGTTGTTATTGTTGTCGTTGTTTTGTTGTTGTCGCTG
TTGTCGTCGTCGTCGTCGTCGTCGTCGTAGAGGAACGCGCCGCCAAGCCC
ACCTCTCATGTCCGCGCTGCCTCCCAAGCGTCCGAGGTCGCCAGGAGGCG
ATCACGATGACGACCCGTCCCACGGAAAGCGCCCCCGCAGCGGGTAG ACG
GGTAGAAGGCCTGGCGGATGTTAAGAGGGGTTGGGCACTACCGTGGTAGC
GTGCTTGCGGCGTATATCGTACCGCCCACGTAGGTTTGCGGTAGTGTGGG
TGTGGTGTGGTTTGGTGGATGCCTCGTCTGTGTCTGTGCCTGTGTGGCGG
TTGTTGGCGGTGCCCTGTAGAGCGAGCGGCACTTGGAGTGAAATTTTGTC
GTGCGTGCGATCAATCAGGGTACACGTTCCGCTTTCGGGTTCCATCCCAG
GGTAATCGAAGTTTCGGTGCGTTTCCGGCAAGAGCCGACATGATCAAAGG
AGGAGGAAGGTTGCGCGCAAAGGGTCAAGTAAAAAAAGCGTGAGGAGTTT
TCCGAAAGCTTGTCAGGGATGGAGGGCGGCAGGATGTTTCAAAACCACGG
TACTGGCACTGCAGCAAGTATGATGGTGATGATGATGATGATGAAAACCA
CTGGTTCAAAATCGACAGACTTGGTTTTAATCTTTTCATTCGCCTTGGCT
TTCCAGGATCATGAAAACGATCGGCTAGCTAGATCCGCTTGGTTATTGTG
ATCAACAGCTGGGGGTGTTGCTGCGGTCGATGCCGCAGGAACGGAAGCTG
AGCTTTCGTCGATGTTGCTTTTAGTCTTGGGAGGGTGTGTGTGTGCGTGG
CAGATGATGTTTTTTGGAATCTGGGAAGTTGTGAAAATTCGCCCAGCAGG
TCCTACAAGCGTCTGTATGCTCCTCTCGTAAACGGCTTGTGACCCAAGAC
CCAAACACCACCGCAGAAAAGAGGCGATGCGTCCACGCTTGCGTGGTTGC
CCGCCAGGGCAGAGGGGCGCTGTGTGTGATGTGCTGGGGGGTTAGGGCCT
ACTTGATGAACGCGTGCAACGCGTGACACCACGAGCCTTTGTCTGTTGCA
GCGATTATTTCGGTTATGTCCCGTTTCGAGTTCATGCGAGCTCTGCGGGT
TCTTTGTAGCAAACCCTGCTATCTGTCTAGGTGCACGCAGCAGTGGCGCC
TGTGAGAACAGCGTCACTTGGCTGTTGTGTTTTTGTACCTGGTTTGCTGC
TGACCCGTTGCTGCCACGCCGCCCTCCTCGGAAAGGTTCAGCACACCTTT
TATGCCCCATCGGGTCGTGTGCAAAGTTAGGATTGCAATCCCACACAGAA
TACGGAGTACTAGGAAGCACGGCGGTGGACGCTGGATCCGTTCCACCCCT
TTGTAGTCATGTCACGTCGCTCCACGCACTCTCTTTCTCTTTCACTCTGT
GGTGTATCGTCGCACTTGAATCAAGCGGAGATGAAGATATGAACATGCGT
TATTTTTGGGCTAGCGTGTGCTTTTTTATGTTTTTTTGTTTTTGCCAGTT
TTTAAAGGAAGGCGCAGGAACTTCGCGTTGACGTGATTGGTTCTCTTTAC
TATTTTTGCGTTTTTTTTGTGGCTTTAGGATGGGCTCAAACTGGAGTGAG
TCCCATGAACTGGTTCCAGTGTGTTGTTGTTTGTTGTGTGTACAGCAAGT
GGTTTCTGAGGCCGTGCCGTGTGCAATGACGATGTGGCGGGCTCAAGTGT
AGTACGGCGACATGTTGCTTGCGCGCACAGAGCCGGCCATTCATGTATCA
GTCATGTCATTTTTTTTTCGAAGTGTCCTCTTTAGGTGTTCGGCCGCGCC
GCCCAGTCTAACAATTTGTGCAAGTAGATACACAAGTGTCGCACGTTCGC
ACGAATTGTTTTTTTCTCTTTCTGAGAGAAAACCTTGGTAGCGTAATGGA
CCGAGCTGGAGGTTTGGGTGAGATTTCGGAAGCCCAAGCCTTTTGGCGCT
CCCCTGTCTGCGAGAGAAAGGGGAAGGAGAACAATCAATCGCGAATCAGA
CGTTTGCATGCACCGCAGGAGGTAAGTGGAGACATTCCCTCCCATGTGAC
CCCGGATGGTAGCCTAGCTAGTTGTAGTGAAGAGGAGGAGGCAGGCCACG
AAAAAA back to top Coding sequence (CDS) from alignment at C-linearis_contig10:384334..387689+
>mRNA_C-linearis_contig10.448.1 ID=mRNA_C-linearis_contig10.448.1|Name=mRNA_C-linearis_contig10.448.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at C-linearis_contig10:384334..387689+ (Chordaria linearis ClinC8C monoicous) back to top