mRNA_C-linearis_contig10.444.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-linearis_contig10.444.1 vs. uniprot
Match: A0A6H5KIG1_9PHAE (Rtt106 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIG1_9PHAE)

HSP 1 Score: 405 bits (1042), Expect = 2.160e-129
Identity = 207/257 (80.54%), Postives = 225/257 (87.55%), Query Frame = 2

Query:  302 TSPVILTLENVQLLQPRGRFDLVFRKDALTVTGKAGAVVVSWDNVRHVIRLPRPEGFNWGKALNPEDPAGSDLVAIPLKDPVPFRKSKTSLVLLQPDPKAKHSEASIVLDGGASHQASGSQGTLLMSAIKLLSGVRQVTPDRGLFASRDRKSFVKCYHGVNEGSLFPLKQGLLFMKPALFLPRSHIEEVVCGRGGSATTRYVDLVVGLEVGDGEGG-TAVTQQEFSNIDREALPCLQSYIQDALVAPRQREVKRTAK 1069
            +SP +LTLENVQLLQPRGRFDLV RK  +T+ GKAG V VSW NVRH+I LPRPEGFNWGK L+P+DPAGSDL+A+PLK PVPFRKSKTS+VLLQPDPKAKHSE SI +DG  SHQ SGSQGTL+MSA+KLLS V+QV PDRGLFASRD KSFVKCYHGVNEGSLFPLKQGLLFMKPALFLPR+ I+EVVCGRGGSATTRYVDLVVGLE  D  G   A  QQEFSNIDR+ALP LQSYIQDALVAPR+RE KR AK
Sbjct:   71 SSPPLLTLENVQLLQPRGRFDLVLRKGGVTIAGKAGDVFVSWQNVRHIISLPRPEGFNWGKVLDPDDPAGSDLIALPLKSPVPFRKSKTSMVLLQPDPKAKHSEVSISVDG-VSHQVSGSQGTLVMSALKLLSRVQQVAPDRGLFASRDGKSFVKCYHGVNEGSLFPLKQGLLFMKPALFLPRADIQEVVCGRGGSATTRYVDLVVGLEAEDEHGELVAKQQQEFSNIDRDALPSLQSYIQDALVAPRRREAKREAK 326

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BLAST of mRNA_C-linearis_contig10.444.1 vs. uniprot
Match: D7FH98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH98_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 1.960e-81
Identity = 154/261 (59.00%), Postives = 176/261 (67.43%), Query Frame = 2

Query:   77 DEWREAVVGGDVKKLSDLVFLAAGSKPKTALSLLRSCVQLLEQTQTTATSLEGTSSTNGHAPPXXXXXXXXXXXXT-----------SPVILTLENVQLLQPRGRFDLVFRKDALTVTGKAGAVVVSWDNVRHVIRLPRPEGFNWGKALNPEDPAGSDLVAIPLKDPVPFRKSKTSLVL---------------LQPDPKAKHSEASIVLDGGASHQASGSQGTLLMSAIKLLSGVRQVTPDRGLFASRDRKSFVKCYHGV 781
            DEW  AV GGD +KLSDLV  +AGS  + ALS+L+SCV +LE+ Q  AT   GT+  NG  P             T           SP +LTLENVQLLQPRGRFDLVFR+  + + GKAG  VV+WDNVRH+IRLPRPEGFNWGK L+P+DPAGSDL+A+PLK PVPFRKSK                    LQPDPKAKHSE SI +DG  SHQ SGSQGTL+MSA+KLLSGVRQV PDRGLFASRD K F    HG+
Sbjct:    2 DEWNSAVAGGDAEKLSDLVLSSAGSSTEAALSILKSCVTILEKKQAAAT---GTTPANG-GPADGSPKSDVTGTTTXXXDSNGSAPSSPPLLTLENVQLLQPRGRFDLVFRESGVIIAGKAGDAVVAWDNVRHIIRLPRPEGFNWGKVLDPDDPAGSDLIALPLKKPVPFRKSKVXXXXXXXXXXXXXXXXXXXLQPDPKAKHSEVSISVDG-TSHQVSGSQGTLVMSALKLLSGVRQVAPDRGLFASRDGKRF----HGL 253

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BLAST of mRNA_C-linearis_contig10.444.1 vs. uniprot
Match: D7FH99_ECTSI (Rtt106 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH99_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.280e-29
Identity = 65/82 (79.27%), Postives = 70/82 (85.37%), Query Frame = 2

Query:  824 MKPALFLPRSHIEEVVCGRGGSATTRYVDLVVGLEVGDGEGG-TAVTQQEFSNIDREALPCLQSYIQDALVAPRQREVKRTA 1066
            MKPALFLPR+ I+EVVCGRGGSATTRYVDLVVGLE  D +G   A  QQEFSNIDR+ALP LQSYIQDALVAPRQRE K+ A
Sbjct:    1 MKPALFLPRTDIQEVVCGRGGSATTRYVDLVVGLEAEDDDGEPVAKQQQEFSNIDRDALPSLQSYIQDALVAPRQREAKQEA 82

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BLAST of mRNA_C-linearis_contig10.444.1 vs. uniprot
Match: A0A7S2RM47_9STRA (FACT complex subunit SSRP1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RM47_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.900e-25
Identity = 92/257 (35.80%), Postives = 133/257 (51.75%), Query Frame = 2

Query:  332 VQLLQPRGRFDLVFRKDALTVTGKAGAVVVSWDNVRHVIRLPRPEGFNWGKALNPEDPAGSDLVAIPLKDPVPFRKSKTSLVLLQPDPKAKHSEASIVLDGGASHQASGSQG--------TLLMSAIKLLSGVRQVT-PDRGLFASRDRKSFVKCYHGVNEGSLFPLKQGLLFMKPALFLPRSHIEEVVCGRGGSATTRYVDLV-VGLEVGDGEGGTAVTQQEFSNIDREALPCLQSYIQDALVAPRQREVKRTAKA 1072
            V L+QPRG+F  V    AL  +GK+  + V WDN+ H+I+ P+P+ +       P+ PA      + LK+P+   KSK + ++LQ D KAK +   + +D  A   A+ S           LL SA  +L  +  ++ PDR +F S     FV CY  V EG LFPL++GLLF +P LFLP + I  +      SA+  Y   V V +E+ DG      T+ EFSNI ++    L  Y  D +V  R+R+  R   A
Sbjct:   88 VSLVQPRGKFACVLTDKALVFSGKS-CISVLWDNIEHIIKFPKPDPYK------PDKPATVFFFCLTLKEPLTVGKSKLACLVLQTDLKAKKT---VGVDPAAPCLAASSVAGEEPVVVSKLLTSASAVLCDMGNLSEPDRSIFRSSVGAGFVSCYRRVQEGFLFPLREGLLFFRPPLFLPIADISGIC-----SASCEYRRSVEVTVEMEDG------TKHEFSNIPKDEAAPLLEYA-DFMVKERKRQQVRVTDA 322

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BLAST of mRNA_C-linearis_contig10.444.1 vs. uniprot
Match: A0A7R9U489_9STRA (FACT complex subunit SSRP1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U489_9STRA)

HSP 1 Score: 101 bits (252), Expect = 8.530e-19
Identity = 89/331 (26.89%), Postives = 148/331 (44.71%), Query Frame = 2

Query:   77 DEWR----------EAVVGGDVKKLSDLVFLAAGSKPKTALSLLRSCVQLLEQTQTTATSLEGTSSTNGHAPPXXXXXXXXXXXXTSPVILTLENVQLLQPRGRFDLVFRKDALTVTGKA--GAVVVSWDNVRHVIRLPRPEGFNWGKALNPEDPAGSDLVAIPLKD-PVPFRKSKTSLVLLQPDPKAKHSEASIVLDGGA-SHQASGSQGTLLMSAIKLLSGVRQVTPDRGLFAS-RDRKSFVKCYHGVNEGSLFPLKQGLLFMKPALFLPRSHIEEVVCGRGGSAT-TRYVDLVVGLEVGDGEGGTAVTQQEFSNIDREALPCLQSYIQ 1021
            D+WR          EA+  GD       +    G++     + L+  V LL+++       E T+                        ++ +  V    PRGR+ +   K +L +  K+    + + ++++R ++++  P  +             +D   + L   P P +  K   V+L    +    E    L+      + +G+   ++ S ++ ++ V  +  D  +FAS     S+V C+HGV +G L+PL +GLLF KP LF+  S I  + CGRGGS   TRYVDL + LE G+G+    V   EFSNIDR+ LP L  Y+Q
Sbjct:    5 DDWRCARRTMAALQEALSKGDADSFVKAIVQLPGARADVLTATLKRAVALLQKSGNANVKTEATA-----------------VHPEEHFVMEMAEVSCHSPRGRYAIRVGKRSLVLQPKSLPKTLHIPFESIRSLVKVEMPNPYK-------RKDLAADYFVLGLDPAPKPVQGGKELPVVLISAERKGFWEIERTLESSILPAKFTGNPSDVISSLLQTVTSVPMLVEDESVFASVLTGASYVSCFHGVKDGHLWPLSEGLLFAKPPLFVSESDILGISCGRGGSTGGTRYVDLTLTLE-GEGDEEKIV---EFSNIDRQELPGLDKYVQ 307

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BLAST of mRNA_C-linearis_contig10.444.1 vs. uniprot
Match: A0A7S1W059_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1W059_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.650e-18
Identity = 85/265 (32.08%), Postives = 122/265 (46.04%), Query Frame = 2

Query:  332 VQLLQPRGRFDLVFRKDALTVTGKAGA-VVVSWDNVRHVIRLPRPEGFNWGKALNPEDPAGSDLV-----AIPLKDPVPFRKSKTSLVLLQ-PDPKAKHSEASIV-----LDGGASHQASGSQGTLLM-----------SAIKLLSGVRQVTPDRGLFA-SRDRKSFVKCYHGVNEGSLFPLKQGLLFMKPALFLPRSHIEEVVCGRGGSATTRYVDLVVGLEVGDGEGGTAVTQQEFSNIDREALPCLQSYIQDALVAPRQREV 1054
            V   QPR + +L +    ++   K G  +VV    V+ VI  P+PE     K+       G  ++     +I    PV FR    S +  Q P      +++  V     LD  AS     ++G L+            SA     G    +     F+ +     FVKCY GVN+G+L+PLK+GLLF KP  F+PRS +  + CGRG   + RYVD+V+ L+    EG       EFSNIDR  L  L  YI D LV   ++++
Sbjct:  123 VSATQPRIKLELSYHSRGISFLTKRGEHIVVPSGAVQEVIVFPKPEDCRPKKSTGTVTWPGRMVLLCLENSIDESHPVQFRNKSLSQICYQLPSSTLPANQSPDVHEQPWLDALASSLDLTNKGALVQIRRVLPASAQCSASSSTHGYAFRSDHNAAFSHTTGGMPFVKCYQGVNDGALYPLKEGLLFFKPPKFVPRSALHSIACGRGAGGS-RYVDMVLSLKDATEEGKEG-DSLEFSNIDRNELRVLNHYIHDVLVKAMEKDL 385

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BLAST of mRNA_C-linearis_contig10.444.1 vs. uniprot
Match: A0A7S4S6B6_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S6B6_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.760e-18
Identity = 86/265 (32.45%), Postives = 123/265 (46.42%), Query Frame = 2

Query:  332 VQLLQPRGRFDLVFRKDALTVTGKAGA-VVVSWDNVRHVIRLPRPEGFNWGKALNPEDPAGSDLV-----AIPLKDPVPFRKSKTSLVLLQ-PDPKAKHSEASIV-----LDGGASHQASGSQGTLLM-----------SAIKLLSGVRQVTPDRGLFA-SRDRKSFVKCYHGVNEGSLFPLKQGLLFMKPALFLPRSHIEEVVCGRGGSATTRYVDLVVGLEVGDGEGGTAVTQQEFSNIDREALPCLQSYIQDALVAPRQREV 1054
            V   QPR + +L +    ++   K G  +VV    V+ VI  P+PE     K+       G  ++     +I    PV FRK   S +  Q P      +++  V     LD  AS     ++G L+            SA     G    +     F+ +     FVKCY GVN+G+L+PLK+GLLF KP  F+PRS +  + CGRG   + RYVD+V+ L+    EG       EFSNIDR  L  L  YI D LV   ++++
Sbjct:  126 VSATQPRIKLELSYHPRGISFLTKRGEHIVVPSGAVQEVIVFPKPEDCRPKKSTGTVTWPGRMVLLCLENSIDESHPVQFRKKSLSQICYQLPSSTLPANQSPDVHEQPWLDALASSLDLTNKGALVQIRRVLPASAQCSASSSTHGYAFRSDHNAAFSHTTGGMPFVKCYQGVNDGALYPLKEGLLFFKPPKFVPRSALHSIACGRGAGGS-RYVDMVLSLKDATEEGKEG-DNLEFSNIDRNELRVLNHYIHDVLVKAMEKDL 388

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BLAST of mRNA_C-linearis_contig10.444.1 vs. uniprot
Match: A0A7S2DUN0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DUN0_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.440e-18
Identity = 81/256 (31.64%), Postives = 131/256 (51.17%), Query Frame = 2

Query:  314 ILTLENVQLLQPRGRFDLVFRKDALTVTGKAGAVVVSWDNVRHVIRLPRPEGFNWGKALNPEDPAGSDLVAIPLKDPVPFRK--SKTSLVLLQPDPKAKHSEASIVLDGGASHQAS-----GSQGTLLMSAIKLLSGVRQVTPDRGLFASRDRKSFVKCYHGVNEGSLFPLKQGLLFMKPALFLPRSHIE--EVVCGRGGSATTRYVDLVVGLEVGDGEGGTAVTQQEFSNIDREALPCLQSYIQDALVAPRQREV 1054
            + +++++Q  QPRGRF L  +   + + GK+ ++ ++   V  +IR P+P+ +   KA N +       + + L +PV + K  S TS+V+        +   +  LD  A+  AS     G +  +L   +  LS     +P R +F S    S + C+  V EG L+PL++GLLF KPAL L  S I   E+V      +  R+++L V  E+ DG      T+ EFSNI +E    LQSY Q   VA ++++V
Sbjct:  114 VCSIKDLQCTQPRGRFSLEVKPSGIILRGKSNSISIALSKVASIIRFPKPDPYRQDKAGNAQH------IMLSLGEPVQYGKTTSLTSVVM--------NVSGTRTLDILANATASITPQKGPEPQVLGDLLGTLSQTPMSSPTRDVFLSSKDVSSIACHRRVQEGFLYPLREGLLFFKPALLLKLSAINSMEIV------SAVRFIELSV--EMTDG------TRHEFSNISKEETNPLQSYAQ--FVAQQRKQV 339

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BLAST of mRNA_C-linearis_contig10.444.1 vs. uniprot
Match: D7FHA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA1_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 4.260e-18
Identity = 49/69 (71.01%), Postives = 54/69 (78.26%), Query Frame = 2

Query:  866 VVCGRGGSATTRYVDLVVGLEVGDGEGG-TAVTQQEFSNIDREALPCLQSYIQDALVAPRQREVKRTAK 1069
            VVCGRGGSA T YVD+VVGLEV D  G   A  QQEF  IDR+ALP LQS+I+DA+VAPRQRE KR AK
Sbjct:   52 VVCGRGGSAMTWYVDMVVGLEVDDDHGKPVANQQQEFFAIDRDALPSLQSFIEDAIVAPRQREAKRKAK 120

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BLAST of mRNA_C-linearis_contig10.444.1 vs. uniprot
Match: B7FW81_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FW81_PHATC)

HSP 1 Score: 99.0 bits (245), Expect = 6.520e-18
Identity = 49/116 (42.24%), Postives = 69/116 (59.48%), Query Frame = 2

Query:  746 DRKSFVKCYHGVNEGSLFPLKQGLLFMKPALFLPRSHIEEVVCGRGGSATTRYVDLVVGLEVGDGEGGTAVTQQ----EFSNIDREALPCLQSYIQDALVAPRQREVKRTAKAEEA 1081
            D   FVKCYHGV++G L+PL++GLLF KP  F+PR  +  + CGRGG  ++RYVDL +             TQ     EF+NI R+ L  + SYI + L+   QR+V + +  E+A
Sbjct:  298 DGMPFVKCYHGVHDGVLYPLREGLLFFKPPCFVPRQKLASIACGRGGDTSSRYVDLTL-----------TTTQDNETFEFTNIHRDELATINSYIHETLIPAMQRDVLKDSDIEDA 402

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig10.444.1 vs. uniprot

BLAST of mRNA_C-linearis_contig10.444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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Match Name	E-value	Identity	Description
A0A6H5KIG1_9PHAE	2.160e-129	80.54	Rtt106 domain-containing protein n=1 Tax=Ectocarpu...	[more]
D7FH98_ECTSI	1.960e-81	59.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FH99_ECTSI	2.280e-29	79.27	Rtt106 domain-containing protein n=1 Tax=Ectocarpu...	[more]
A0A7S2RM47_9STRA	1.900e-25	35.80	FACT complex subunit SSRP1 n=1 Tax=Rhizochromulina...	[more]
A0A7R9U489_9STRA	8.530e-19	26.89	FACT complex subunit SSRP1 n=1 Tax=Pinguiococcus p...	[more]
A0A7S1W059_9STRA	1.650e-18	32.08	Hypothetical protein (Fragment) n=1 Tax=Ditylum br...	[more]
A0A7S4S6B6_9STRA	1.760e-18	32.45	Hypothetical protein n=3 Tax=Ditylum brightwellii ...	[more]
A0A7S2DUN0_9STRA	2.440e-18	31.64	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
D7FHA1_ECTSI	4.260e-18	71.01	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
B7FW81_PHATC	6.520e-18	42.24	Predicted protein n=2 Tax=Phaeodactylum tricornutu...	[more]

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