mRNA_C-linearis_contig10.442.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.442.1 vs. uniprot
Match: A0A6H5K4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H1_9PHAE) HSP 1 Score: 175 bits (443), Expect = 3.630e-44 Identity = 225/342 (65.79%), Postives = 254/342 (74.27%), Query Frame = 1 Query: 2047 SRCLDAILVALNHTSSSGESWYVSKTQLQLASIELCTACRRLATFQLTIDDNIPRRLLSYAD------APAPTLELGRYLSPRVPRLKARIAAWHRRSCEELGRPIYALTEAQFLVFGSGFDKSVDGVSWPKGLKMISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQKLDRE--WPKSLRHLALDRGFTQALHGLGRWMPNLEELELVVNSDDYVASLADVVWPASLKKLALPKKLWDRNAATLPKGVELDVFF 3048
SRCL+A VAL T ESWYVS TQLQLAS+ C ACR T LT+DD+IPRRLL+ APA + GR RVPR AR WHR+SC EL IYAL E F + GF++++ V+WP+ L+ + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +D+E W KSL +L L R F Q+LHG+GRW P+LEEL L V+ +Y SLA V WP LKK+ + K LWD+++A P GVE DVFF
Sbjct: 28 SRCLEAFRVALQQTCLDRESWYVSTTQLQLASLPFCLACRDSVTLCLTVDDSIPRRLLADVGGNEAVVAPAGPCQCGR---SRVPRFHAREVTWHRQSCVELSASIYALAEVDFFILDGGFNRAIGAVAWPRKLRRLEFGDYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDQEADWLKSLEYLRLGRWFNQSLHGIGRWAPDLEELNLRVDGQEYGLSLAGVEWPTGLKKMTVDKTLWDKHSAAFPLGVEWDVFF 366
BLAST of mRNA_C-linearis_contig10.442.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 114 bits (285), Expect = 2.310e-22 Identity = 61/131 (46.56%), Postives = 80/131 (61.07%), Query Frame = 1 Query: 2047 SRCLDAILVALNHTSSSGESWYVSKTQLQLASIELCTACRRLATFQLTIDDNIPRRLLSYADAPAPTLELGRYLSPRVPRLKARIAAWHRRSCEELGRPIYALTEAQFLVFGSGFDKSVDGVSWPKGLKMI 2439
S CL + VALN T G+SWY S +LQLAS+ELC ACR T LT+D + PRRLL+ ADAP+P + R RVPRL+AR A W+ + + I+A + +L FG F S+D + WP+ LK I
Sbjct: 134 SSCLKTLTVALNETCD-GKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPK--RLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTI 261
BLAST of mRNA_C-linearis_contig10.442.1 vs. uniprot
Match: A0A6H5K0U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.300e-16 Identity = 53/131 (40.46%), Postives = 72/131 (54.96%), Query Frame = 1 Query: 2044 DSRCLDAILVALNHTSSSG--ESWYVSKTQLQLASIELCTACRRLATFQLTIDDNIPRRLLSYADAPAPTLELGRYLSPRVPRLKARIAAWHRRSCEELGRPIYALTEAQFLVFGSGFDKSVDGVSWPKGL 2430
+SR LD ++V LN G + W+ S +LQLAS++LC ACR A L ++ + P RLL+ AD+P+ E G RVPRL+AR +W S + L IYAL AQ F + +D V WP L
Sbjct: 26 NSRFLDVVIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLLAPADSPSDGSEEG----TRVPRLRAREVSWDLTSADRLSSSIYALASAQVFTFSDSLNAVLDAVVWPTSL 152
BLAST of mRNA_C-linearis_contig10.442.1 vs. uniprot
Match: D8LCS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS9_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 4.740e-14 Identity = 60/178 (33.71%), Postives = 84/178 (47.19%), Query Frame = 1 Query: 1981 GRARAVDFHHPGMEV-------------EADPGGDSRCLDAILVALNHTSSSGESWYVSKTQLQLASIELCTACRRLATFQLTIDDNIPRRLLSYADAPAPTLELGRYLSPRVPRLKARIAAWHRRSCEELGRPIYAL-------TEAQFLVFGSG-------FDKSVDGVSWPKGLK 2433
GRA AV+ P E + DP SRCLDA++VAL + + G+ WY TQLQLAS++ CTACR + T LT+D ++P RL + D + RVP + R W+ +PI AL + + LV G G F++ VDG+ P L+
Sbjct: 48 GRASAVEAVEPSAEAPIIPSNAPSSVMSQRDPPDRSRCLDALIVALTN-AGDGQGWYTPTTQLQLASLDFCTACRAVPTVHLTVDGDVPARLKAGIDNGG---------ASRVPAFRPRCVTWN--------KPIAALRGEDDVFADVRVLVLGHGLGRVGVRFNRWVDGLQLPPALQ 207
BLAST of mRNA_C-linearis_contig10.442.1 vs. uniprot
Match: A0A6H5KMU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU8_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 3.210e-13 Identity = 52/132 (39.39%), Postives = 68/132 (51.52%), Query Frame = 1 Query: 2059 DAILVALNHTSSSGESWYVSKTQLQLASIELCTACRRLATFQLTIDDNIPRRLLSYADAPAPTLELGRYLSPRVPRLKARIAAWH-----RRSCEELGRPIYALTEAQFLVFGSGFDKSVDGVSWPKGLKMI 2439
DA+ +ALN S WY SK QLQLAS++LC ACRR+ T LT++ ++ L ++ A A L RVP L+ R W+ R C + A LVFG FD VD V+WP GLK +
Sbjct: 17 DALDIALNQVSGVN-GWYTSKLQLQLASLQLCLACRRVPTSHLTVERDVLALLWPHSAAEATRSRLVSLGQSRVPALRPRKVTWNLATLSMRHCGD------AFESVDVLVFGDSFDYRVDRVTWPPGLKKL 141
BLAST of mRNA_C-linearis_contig10.442.1 vs. uniprot
Match: D7G241_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G241_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 8.780e-13 Identity = 60/147 (40.82%), Postives = 77/147 (52.38%), Query Frame = 1 Query: 2026 EADPGGDSRCLDAILVALNHTSSSGESWYVSKTQLQLASIELCTACRRLATFQLTIDDNIPRRLLSYADAPAPTLELGRYLSP-------RVPRLKARIAAWHRRSCEELGRPIYAL-TEAQFLVF-GSGFDKSVDGVSWPKGLKMI 2439
+A+ GGDS+CL+A +VAL+ T GE WY S QLQLAS++LC ACR + T L+++ + P L + A A P L P RVP R W R+ ELG L Q L+F G D DG SWP GLK +
Sbjct: 3 QAESGGDSQCLEAFVVALDLTCD-GEKWYASTQQLQLASLDLCKACRGVPTLALSVERSTPEYLWAEA-ARGPRGRLTGEKKPPAARTRTRVPPFGPRRVMWKLRA-RELGLARKELWANVQCLLFTGYHNDWVCDGFSWPTGLKRL 146
BLAST of mRNA_C-linearis_contig10.442.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 9.520e-13 Identity = 48/134 (35.82%), Postives = 66/134 (49.25%), Query Frame = 1 Query: 2041 GDSRCLDAILVALNHTSSSGESWYVSKTQLQLASIELCTACRRLATFQLTIDDNIPRRLLSYADAPAPTLELGRYLSPRVPRLKARIAAWHRRSCEELGRPIYALTEAQFLVFGSGFDKSVD-GVSWPKGLKMI 2439
G SRCLDA+++ALN +SG WY S QLQLAS+ELC +CR + +L + P RL T + R RVP ++AR W A +E G GFD + G+ WP+ L ++
Sbjct: 8 GPSRCLDALIIALNQ--ASGGEWYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLL 139
BLAST of mRNA_C-linearis_contig10.442.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 1.590e-11 Identity = 48/133 (36.09%), Postives = 64/133 (48.12%), Query Frame = 1 Query: 2041 GDSRCLDAILVALNHTSSSGESWYVSKTQLQLASIELCTACRRLATFQLTIDDNIPRRLLSYADAPAPTLELGRYLSPRVPRLKARIAAWHRRSCEELGRPIYALTEAQFLVFGSGFDKSVD-GVSWPKGLKM 2436
G SRCLDA+++ALN +SG WY S QLQL S+ELC ACR + +L + P RL T + R RVP ++AR W A +E G GFD + G+ WP+ L +
Sbjct: 39 GPSRCLDALIIALNQ--ASGGEWYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGVALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTL 169
BLAST of mRNA_C-linearis_contig10.442.1 vs. uniprot
Match: D7FUL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL9_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 7.250e-10 Identity = 50/146 (34.25%), Postives = 72/146 (49.32%), Query Frame = 1 Query: 2014 GMEV-EADPGG---DSRCLDAILVALNHTSSSG--ESWYVSKTQLQLASIELCTACRRLATFQLTIDDNIPRRLLSYADAPAPTLELGRYLSPRVPRLKARIAAWHRRSCEELGRPIYALTEAQFLVFGSGFDKSVDGVSWPKGLK 2433
G+E+ EA+ G SR LD +V LN G + W+ S +LQLAS++LC ACR A L +D + P RL + AD+P+ E RVPRL+AR + L FG F++ ++ VS+P L+
Sbjct: 12 GLEIHEAESGAAPTGSRFLDVAIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVDTSTPLRLFAPADSPSDDSEE----DTRVPRLRAR----------------------EQLTFGRRFNRPLEAVSFPASLR 131
BLAST of mRNA_C-linearis_contig10.442.1 vs. uniprot
Match: A0A6H5JR57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR57_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 3.960e-6 Identity = 41/98 (41.84%), Postives = 55/98 (56.12%), Query Frame = 1 Query: 2041 GDSRCLDAILVALN--HTSSSGES----WYVSKTQLQLASIELCTACRRLATFQLTIDDNIPRRLLSYADAPAPTLELGRYLSP--RVPRLKARIAAW 2310
G SR LDA+ VALN + S +G+ W+ S LQLAS++LC ACR + T + ID + PR L + PT+ G Y +P RVP L+A W
Sbjct: 13 GYSRFLDALTVALNQAYDSRAGDGDNIRWFTSTLNLQLASVDLCRACRSVPTLLVKIDHDTPRSLWT------PTVYAGAYSAPSGRVPPLRAHGVRW 104 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.442.1 >prot_C-linearis_contig10.442.1 ID=prot_C-linearis_contig10.442.1|Name=mRNA_C-linearis_contig10.442.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=346bp MEVEADPGGDSRCLDAILVALNHTSSSGESWYVSKTQLQLASIELCTACRback to top mRNA from alignment at C-linearis_contig10:263410..267844- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.442.1 ID=mRNA_C-linearis_contig10.442.1|Name=mRNA_C-linearis_contig10.442.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4435bp|location=Sequence derived from alignment at C-linearis_contig10:263410..267844- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:263410..267844- >mRNA_C-linearis_contig10.442.1 ID=mRNA_C-linearis_contig10.442.1|Name=mRNA_C-linearis_contig10.442.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2076bp|location=Sequence derived from alignment at C-linearis_contig10:263410..267844- (Chordaria linearis ClinC8C monoicous)back to top |