Homology
BLAST of mRNA_C-linearis_contig10.440.1 vs. uniprot
Match:
D7FTK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK2_ECTSI)
HSP 1 Score: 110 bits (275), Expect = 4.780e-24
Identity = 124/297 (41.75%), Postives = 142/297 (47.81%), Query Frame = 1
Query: 7 SSPVGSVESDFWLGHEDGDEHGEGPENDGCDPVEAAHAAVDRLMASTAPDATSTPHAGGGSXXXXXXXXXXXXXXGDGGSDAKLLEKLLFDGLGMQKVAAGGDASRLPTKSRRKARGSSS-------------------AADAGASPALS------FPTTPA------NPXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYKKGKTAGVLSP--APSSASSTPLSALSSNGRSSSGGSGSTPQSVGGFSNSSPGSSISIASMTLAPSLWKLVERGETCPFPDCAFTVAFLEEKEKELA 798
+SP GSVESDFW G +GD+ ENDG DP+EAAHAAVDR A ST DG D +LLE LL DGLG++ + AG + + RG+S A +G LS FP TPA + XXXXXXX +K + LSP A SSASSTPLS LSSN STP+S G S +S GS IA+MTL PSLWKLVERGETCPFPDCAFTVAF E KE A
Sbjct: 63 TSPAGSVESDFW-GEGEGDDV---MENDGFDPMEAAHAAVDRNDACGQHMQPST----------------------DG--DTRLLEDLLLDGLGLRHMEAGPSGGVVAATAGAGDRGASRSXXXXXXXXXXXXXXXSRPAKASGGGGILSNCALDDFPATPATNKNASDTDKPGTKAKGDHGTGAGGRASGXXXXXXXXXRKNR----LSPGSASSSASSTPLSVLSSNS--------STPRSAGDGSQTSLGS---IAAMTLNPSLWKLVERGETCPFPDCAFTVAFFERKEARKA 316
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.440.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 4.78e-24 / Id = 41.75 Sequence D7FTK2_ECTSI
Match Name E-value Identity Description
D7FTK2_ECTSI 4.780e-24 41.75 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 4 Model size 937 Cds size 936 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927327.6502206-CDS-C-linearis_contig10:233065..233196 1622927327.6502206-CDS-C-linearis_contig10:233065..233196 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 233066..233196 + 1690879628.5048754-CDS-C-linearis_contig10:233065..233196 1690879628.5048754-CDS-C-linearis_contig10:233065..233196 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 233066..233196 + 1622927327.6613574-CDS-C-linearis_contig10:233643..233850 1622927327.6613574-CDS-C-linearis_contig10:233643..233850 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 233644..233850 + 1690879628.5162377-CDS-C-linearis_contig10:233643..233850 1690879628.5162377-CDS-C-linearis_contig10:233643..233850 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 233644..233850 + 1622927327.6787343-CDS-C-linearis_contig10:234963..235372 1622927327.6787343-CDS-C-linearis_contig10:234963..235372 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 234964..235372 + 1690879628.524697-CDS-C-linearis_contig10:234963..235372 1690879628.524697-CDS-C-linearis_contig10:234963..235372 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 234964..235372 + 1622927327.691926-CDS-C-linearis_contig10:235689..235878 1622927327.691926-CDS-C-linearis_contig10:235689..235878 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 235690..235878 + 1690879628.54129-CDS-C-linearis_contig10:235689..235878 1690879628.54129-CDS-C-linearis_contig10:235689..235878 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 235690..235878 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.440.1
>prot_C-linearis_contig10.440.1 ID=prot_C-linearis_contig10.440.1|Name=mRNA_C-linearis_contig10.440.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=312bp
MASSPVGSVESDFWLGHEDGDEHGEGPENDGCDPVEAAHAAVDRLMASTA back to top mRNA from alignment at C-linearis_contig10:233066..235878+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.440.1 ID=mRNA_C-linearis_contig10.440.1|Name=mRNA_C-linearis_contig10.440.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2813bp|location=Sequence derived from alignment at C-linearis_contig10:233066..235878+ (Chordaria linearis ClinC8C monoicous)ATGGCGTCCTCCCCGGTCGGATCGGTTGAGTCAGATTTCTGGTTAGGGCA
TGAAGATGGAGATGAACATGGCGAAGGCCCTGAGAACGACGGGTGTGACC
CCGTGGAGGCAGCGCACGCGGCGGTTGACAG GTGTGTACAGTATGTTTTG
TTTGGTTGGGATGTTATGGTATGTTATGGTGGTGTGTTGGGTGTATTTTT
GTTTCCACACTTGTCTGCGGTTGGTCTGCAATTTCACGTCTACATGTCAT
ACTTCGAAGTAGTTTGGTGTTTTCTTGCGCAAAGAGCAAGAGTAGGAGCA
AGAGCAGAGGTTTCAGGAGGTGTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GATGTTGTTGTTGTTTGTGTGTGTATTAATCAATACAGCATCAAAGAAAG
AACCTCCACTCGAAGAGAAAAATCTCCGTGTTTCGTTGTTGACAGTCCCG
TTGCTGTTGTTGTTGTATTGGAGCTGTTGACACCAGAAAACCCGGTAGCT
CCACTTGGACTTTGTTCCTCTCTGTCATGTTCGACCCACCCTCCACCCCA
TGCAACCTCATCCGTAACCGTCATACAGGTTGATGGCTTCCACTGCGCCC
GACGCGACCAGTACACCGCACGCCGGTGGCGGTAGCGGTGGCGGTAGCGG
TGGGGGTGGTGGTGGTGGTGGTAGTCATGGTGATGGCGGGAGCGACGCAA
AGCTGTTGGAGAAGCTCTTGTTTGATGGCTTGGGAATGCAGAAGGTTGCA
GCGGGTGGAGACGCCTCGAGACTCCCCACAAAAAG GTGCATATGAAAAAG
TGAATAGATAAATAGATCAATCGATAGGGTTGGGGACTGGCGCTGCGCGC
CAGTACCAGGAAACAGCAGCCAGTTTCCTGGGTCCTACCAGTACACGGGT
GTCGCGGCGCAGCCGCGACCACCGCCCCCCCCCGGCTGGTTGGGGGGCCC
CGCCGGAGGCGTATTTTTACGCGATTTGGCTTCACTAGAAGATATTTTTT
GGGTGATTTTGGGCCACTTCGATGATGCCTGCGCGGGTGCGAAATACGAT
GAAAAACTTCAAATCAAATATCAAATATAGTCAGAACCCAGAGAACGCCT
TACACCTACTTGTATTCAATGCATGCAGAAAACAGTATAATAGGGCATCA
GGAATGCCACGCGGGTGTAGAAGGCGTTAGTCGGAAAGAGTGAGCAATAG
GCAAGCAAGGCGTACCTAATATAATAGCACAAAGAAAGGTTAGCCAACAA
TATTCAACGAAGCACCGGCGAAAACGCGCAAACTACTCCGTGCGGTTCAG
GAGGCACAATGTAGGACGTACGTAGAGTGGGTATGTACTAGCTGTACTGG
CAGCCTCTGACGCAGTACAGGAATACTGCCAGTACAGGATTCCTGGCAGT
AGATACTGGTCCAGTCCCCAACCCTATGAATCGATGAAAGATGAATAGAT
GAATGAAGAGGATTGTACTATCATACTGCTTTACTGCTGTAATAGTGCAC
TTTTTGTGCTATAGCGGGGCGGAGGCGCCTCAAGCCTCCGTCATCAAAGG
GTGCTGATTATGCAGGAGCAAGCCAATGTTGTTGGGGGTTTAGTGTGTGT
TTCGGACTTTCAGAACAAAGCCATCGTAATGTACTCCGTATTGTACAGAG
TATTATAGCTGTCAAACAACGCCCCCGACCTGGACCACCAGCCTTCCTTT
CTCATATTTCATCTCTTCTCATTCGGCCTGCTTTCTCTTTCTCTTTCTTT
CTCTTTCTCTTTCTTTCTCTTTCTCTTTCTCTTAATCTCTCGTCTTGTCA
CTAAAGTATATCTTACCCCGGCCGGCCGCCGCACGCTGCTAATTTACACG
TGTGCGCGTGTTGTATGGTACATGGTTGTTTTTGTTTTTCGTCTCCAGCC
GCAGGAAAGCCAGGGGCTCATCCTCCGCCGCCGATGCCGGTGCCAGTCCC
GCTTTGAGCTTTCCCACCACCCCCGCCAACCCCAACGCCAACGGCAACGC
GGACACGGGACACGGCCGCCGCAAGAACGGCTCGGGCAGCAGCAGCAGCA
GCAACAGCAACAGCAACAGGTACAAGAAGGGCAAGACCGCCGGCGTCCTG
TCGCCAGCCCCATCATCGGCATCGTCCACCCCGCTGTCCGCCCTCTCGTC
CAACGGCCGCAGCAGCAGCGGCGGCAGCGGCAGTACGCCCCAGAGTGTCG
GGGGATTCTCCAACTCTTCCCCCGGGTCCTCCATCTCCATCGCCTCCATG
ACTCTGGCCCCTTCGCTTTGGAAGCTCGTGGAGCGCGGAGAGACTTGCCC
TTTCCCG GTATTTTTTTTGTGTTTTTTTTTCATAATTGTGGTGTTGGGTG
GGTACAGCAGCGGCCCAACAAGTAACTAAATTTCAGGATTTCGACTCATG
CATGTAGTCTTCGATGTTGATTTCTGCCGTCATGTACAAAATATTCCAAA
ATGATTTTGATACCTGGTGGGTTTTGGTACGCATGTAAATGTGCCAAGTA
GCCACCAAGAATTTCACACGAATATTGTTGAGCTGTTATTTCTGTTTCCA
GGACCGCGTCGTGATAACTCTGTGGATGAATCCCGATTTCGTGGATGTGC
CACGCGTTGGTGTGATATTTGCAGGACTGCGCTTTCACGGTTGCATTCCT
CGAGGAGAAGGAGAAAGAGCTCGCCAAGAAGAGGAAGGCCCACAGCGACT
CGCAAGGAGGAGGCCAGCCAGGCGCCGGGACCCTGGTTGAGATCGAAAAT
TTCAACGCTGGCGGTCCCAGTCTCTTGAACGGAAGCGCTGCCGACGCACG
CGCGCTCGTCGAT back to top Coding sequence (CDS) from alignment at C-linearis_contig10:233066..235878+
>mRNA_C-linearis_contig10.440.1 ID=mRNA_C-linearis_contig10.440.1|Name=mRNA_C-linearis_contig10.440.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1872bp|location=Sequence derived from alignment at C-linearis_contig10:233066..235878+ (Chordaria linearis ClinC8C monoicous) back to top