mRNA_C-linearis_contig10.439.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.439.1 vs. uniprot
Match: D7FTJ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTJ8_ECTSI) HSP 1 Score: 354 bits (908), Expect = 2.050e-114 Identity = 200/264 (75.76%), Postives = 212/264 (80.30%), Query Frame = 2 Query: 401 GGSTRFLAAPAAAETARAVAVSRRSMSSDTTGG-GSGSSGRFSDDLEKLISRAGEKVDRPGVAKAAAGEEGGALVSREGDAEGLEVEE-----DPKLSARAMKFRAMISKLKPQKKAVVVKTFTPSREPLVDNLGRSYGLGRRKTSTARVWISMSKGEGGVFTVNSRSMIDYFPRDHLQNEILKPLEYTRKLGSFHVRCTAKGGGQAGQAGAIRLGLSRALEAHDPWLRKFLKKEGMMERDSRKVERKKPGLKKARKAPQWVKR 1174
GG L APA + + VSRR MSS TTG S SSGRFS+DLEKLISRAGE+ DR G K+ GE+ A+ DP LSARAMKFRAMISKL+PQKK VVKTFTPSREPLVDNLGRSYGLGRRKTSTARVWIS+SKGEGGVF VNSR MIDYFPRDHLQNEILKPLEYT KLG+FHVRCTAKGGGQAGQAGAIRLGL+RALEAHDPWLRK LKKEGMMERDSR+VERKKPGLKKARKAPQWVKR
Sbjct: 59 GGKNPALPAPAGSA---GLVVSRRHMSSGTTGDDSSSSSGRFSEDLEKLISRAGERADRTG--KSGKGEKASAVXXXXXXXXXXXXXXXXXXXDPALSARAMKFRAMISKLRPQKKTAVVKTFTPSREPLVDNLGRSYGLGRRKTSTARVWISLSKGEGGVFMVNSRPMIDYFPRDHLQNEILKPLEYTNKLGNFHVRCTAKGGGQAGQAGAIRLGLARALEAHDPWLRKMLKKEGMMERDSRRVERKKPGLKKARKAPQWVKR 317
BLAST of mRNA_C-linearis_contig10.439.1 vs. uniprot
Match: A0A7S2A920_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A920_TRICV) HSP 1 Score: 152 bits (385), Expect = 3.840e-38 Identity = 80/140 (57.14%), Postives = 99/140 (70.71%), Query Frame = 2 Query: 755 PSREPLVDNLGRSYGLGRRKTSTARVWISMSKGEGGVFTVNSRSMIDYFPRDHLQNEILKPLEYTRKLGSFHVRCTAKGGGQAGQAGAIRLGLSRALEAHDPWLRKFLKKEGMMERDSRKVERKKPGLKKARKAPQWVKR 1174
P R P +D+ GR+YGLGRRKT+TARVWI G V TVN +DYF R+ L+ +IL P TR G F VRC GGG++GQAGA+RLG++RALE ++P R +K +G+M RD R VERKK G KKARKAPQWV+R
Sbjct: 153 PVRVPQIDDRGRAYGLGRRKTATARVWIYPGSG---VVTVNKMPFVDYFEREALREDILSPFIVTRTCGQFDVRCYCHGGGKSGQAGAVRLGVARALEKYNPEYRPPMKHKGLMTRDPRMVERKKIGKKKARKAPQWVRR 289
BLAST of mRNA_C-linearis_contig10.439.1 vs. uniprot
Match: A0A3R7JDC3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JDC3_9STRA) HSP 1 Score: 150 bits (380), Expect = 4.240e-38 Identity = 78/135 (57.78%), Postives = 93/135 (68.89%), Query Frame = 2 Query: 773 VDNLGRSYGLGRRKTSTARVWISMSKGE-GGVFTVNSRSMIDYFPRDHLQNEILKPLEYTRKLGSFHVRCTAKGGGQAGQAGAIRLGLSRALEAHDPWLRKFLKKEGMMERDSRKVERKKPGLKKARKAPQWVKR 1174
+D GR+YG GRRKTSTARVW+ S GG VN + ++DYF RD + E+LKP K+G F V CT KGGG GQAGA+R G++RAL+ +DP R LKK G+M RD R VERKKPG KKARK QWVKR
Sbjct: 99 LDEKGRAYGTGRRKTSTARVWVKQSAEPFGGRIVVNKKDVVDYFVRDTHREEVLKPFSVIEKIGGFDVYCTVKGGGMTGQAGAVRHGIARALQNYDPEYRPALKKAGLMTRDPRMVERKKPGQKKARKKFQWVKR 233
BLAST of mRNA_C-linearis_contig10.439.1 vs. uniprot
Match: A0A0L0D3D9_THETB (30S ribosomal protein S9 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D3D9_THETB) HSP 1 Score: 147 bits (371), Expect = 8.540e-37 Identity = 78/139 (56.12%), Postives = 94/139 (67.63%), Query Frame = 2 Query: 773 VDNLGRSYGLGRRKTSTARVWIS-----MSKGEGGVFTVNSRSMIDYFPRDHLQNEILKPLEYTRKLGSFHVRCTAKGGGQAGQAGAIRLGLSRALEAHDPWLRKFLKKEGMMERDSRKVERKKPGLKKARKAPQWVKR 1174
+D LGR+YG GRRKTS ARVW+ + V VNS+ + DYFP H +N +++PL KLG+F +R T KGGG GQAGA+RLG+ RALE DP RK LK GMM RD R VERK GL+KAR+APQWVKR
Sbjct: 99 LDALGRAYGTGRRKTSIARVWVEPVAHPAAPQPADVLVVNSKPLADYFPAMHHRNHVIEPLRLLGKLGAFKIRATVKGGGHTGQAGALRLGICRALEIVDPAFRKPLKAAGMMTRDPRMVERKLAGLRKARRAPQWVKR 237
BLAST of mRNA_C-linearis_contig10.439.1 vs. uniprot
Match: A0A8K1CU54_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CU54_PYTOL) HSP 1 Score: 149 bits (376), Expect = 1.820e-36 Identity = 81/135 (60.00%), Postives = 95/135 (70.37%), Query Frame = 2 Query: 773 VDNLGRSYGLGRRKTSTARVWISMS-KGEGGVFTVNSRSMIDYFPRDHLQNEILKPLEYTRKLGSFHVRCTAKGGGQAGQAGAIRLGLSRALEAHDPWLRKFLKKEGMMERDSRKVERKKPGLKKARKAPQWVKR 1174
VD LGR+YG GRRKTSTARVW+ S K G VN + ++DYF RD + +ILKP ++G+F V CT KGGG +GQAGAIR GLSRAL+ DP R LKKE ++ RD R VERKKPG KKARK QWVKR
Sbjct: 195 VDELGRAYGTGRRKTSTARVWVKRSDKPFDGRIKVNKKDLVDYFVRDTHREDILKPFSVIDEIGNFDVYCTVKGGGLSGQAGAIRHGLSRALQNFDPNYRPLLKKEKLLTRDPRMVERKKPGQKKARKKFQWVKR 329
BLAST of mRNA_C-linearis_contig10.439.1 vs. uniprot
Match: A0A6S9GRK8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GRK8_HETAK) HSP 1 Score: 145 bits (366), Expect = 4.120e-36 Identity = 80/139 (57.55%), Postives = 99/139 (71.22%), Query Frame = 2 Query: 758 SREPLVDNLGRSYGLGRRKTSTARVWISMSKGEGGVFTVNSRSMIDYFPRDHLQNEILKPLEYTRKLGSFHVRCTAKGGGQAGQAGAIRLGLSRALEAHDPWLRKFLKKEGMMERDSRKVERKKPGLKKARKAPQWVKR 1174
++EP +D+ GRSYG GRRK + ARVWI GEG FTVNS+ M +YF R Q+++ KP + F V CT +GGG GQAGA+RLGLSRALE ++P+ R LKKEG++ RD+R VERKKPG KKARK QWVKR
Sbjct: 101 TKEPKIDDQGRSYGTGRRKAAIARVWIK--PGEGN-FTVNSKPMPEYFGRAAHQHDVAKPFLASGTAARFDVLCTVQGGGLTGQAGAVRLGLSRALENYNPFNRPSLKKEGLLTRDARVVERKKPGQKKARKRFQWVKR 236
BLAST of mRNA_C-linearis_contig10.439.1 vs. uniprot
Match: A0A225UXJ6_9STRA (Mitochondrial/chloroplast ribosomal protein S9 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UXJ6_9STRA) HSP 1 Score: 145 bits (365), Expect = 4.830e-35 Identity = 75/135 (55.56%), Postives = 94/135 (69.63%), Query Frame = 2 Query: 773 VDNLGRSYGLGRRKTSTARVWIS-MSKGEGGVFTVNSRSMIDYFPRDHLQNEILKPLEYTRKLGSFHVRCTAKGGGQAGQAGAIRLGLSRALEAHDPWLRKFLKKEGMMERDSRKVERKKPGLKKARKAPQWVKR 1174
+D+ GR+YG GRRKTS ARVW+ ++ G VN + ++DYF RD + E+LKP ++G F V CT KGGG GQAGA+R G++RAL+A DP LR LKKEG++ RD R VERKKPG KARK QWVKR
Sbjct: 186 LDSKGRAYGTGRRKTSVARVWVKPAAQPFTGRVQVNKKDLVDYFVRDTHREEVLKPFSVVEQIGGFDVYCTVKGGGMTGQAGAVRHGIARALQAFDPELRPALKKEGLLTRDPRMVERKKPGQAKARKKFQWVKR 320
BLAST of mRNA_C-linearis_contig10.439.1 vs. uniprot
Match: A0A1V9YGL8_9STRA (30S ribosomal protein S9 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGL8_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.030e-34 Identity = 77/135 (57.04%), Postives = 91/135 (67.41%), Query Frame = 2 Query: 773 VDNLGRSYGLGRRKTSTARVWISMSKGEG-GVFTVNSRSMIDYFPRDHLQNEILKPLEYTRKLGSFHVRCTAKGGGQAGQAGAIRLGLSRALEAHDPWLRKFLKKEGMMERDSRKVERKKPGLKKARKAPQWVKR 1174
+D LGR+YG GRRKTS ARVWI + EG G VN M+DYF RD ++E+L P ++LG F V +GGG +GQAGA R G+SRALE ++P R LKK G M RD R VERKKPG KKARK QWVKR
Sbjct: 103 IDELGRAYGTGRRKTSNARVWIKPAAEEGKGTVRVNKMDMVDYFTRDTHRHELLLPFLEVKRLGDFDVMINVRGGGLSGQAGAARHGISRALEKYNPDFRSPLKKAGFMTRDPRMVERKKPGQKKARKQFQWVKR 237
BLAST of mRNA_C-linearis_contig10.439.1 vs. uniprot
Match: A0A024G743_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G743_9STRA) HSP 1 Score: 141 bits (355), Expect = 1.350e-34 Identity = 76/135 (56.30%), Postives = 91/135 (67.41%), Query Frame = 2 Query: 773 VDNLGRSYGLGRRKTSTARVWISMSKGE-GGVFTVNSRSMIDYFPRDHLQNEILKPLEYTRKLGSFHVRCTAKGGGQAGQAGAIRLGLSRALEAHDPWLRKFLKKEGMMERDSRKVERKKPGLKKARKAPQWVKR 1174
VD+LGR+YG GRRKTSTARVWI S GV VN + ++DYF RD + +L P ++G F V C +GGG +GQAGAIR G+SRAL+ DP R LK+EG + RD R VERKKPG KARK QWVKR
Sbjct: 101 VDDLGRAYGTGRRKTSTARVWIKKSSTPFRGVVRVNKKDVVDYFVRDSNREHVLSPFVAVDQVGHFDVMCNVRGGGLSGQAGAIRHGISRALQNFDPSYRPLLKEEGYLTRDPRMVERKKPGQPKARKKYQWVKR 235
BLAST of mRNA_C-linearis_contig10.439.1 vs. uniprot
Match: A0A1W0A1D3_9STRA (30S ribosomal protein S9 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1D3_9STRA) HSP 1 Score: 140 bits (354), Expect = 1.530e-34 Identity = 75/135 (55.56%), Postives = 90/135 (66.67%), Query Frame = 2 Query: 773 VDNLGRSYGLGRRKTSTARVWISMSKGEG-GVFTVNSRSMIDYFPRDHLQNEILKPLEYTRKLGSFHVRCTAKGGGQAGQAGAIRLGLSRALEAHDPWLRKFLKKEGMMERDSRKVERKKPGLKKARKAPQWVKR 1174
+D GR+YG GRRKTS ARVWI + EG G+ +N + M DYF RD ++E+L P ++LG F V +GGG GQAGA+R G+SRALE +P R LKK G M RD R VERKKPG KKARK QWVKR
Sbjct: 94 IDEFGRAYGTGRRKTSNARVWIKPAAEEGKGIIRINKKDMTDYFTRDTHRHELLLPFLEVKRLGDFDVMANVRGGGLTGQAGAVRHGISRALEKFNPDFRPPLKKAGFMTRDPRMVERKKPGQKKARKQFQWVKR 228 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.439.1 >prot_C-linearis_contig10.439.1 ID=prot_C-linearis_contig10.439.1|Name=mRNA_C-linearis_contig10.439.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=318bp MASMATSAIPSSTAMLTKSPFARRAMTAAAAATSRRGSASLHSASTAAASback to top mRNA from alignment at C-linearis_contig10:216103..220918+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.439.1 ID=mRNA_C-linearis_contig10.439.1|Name=mRNA_C-linearis_contig10.439.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4816bp|location=Sequence derived from alignment at C-linearis_contig10:216103..220918+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:216103..220918+ >mRNA_C-linearis_contig10.439.1 ID=mRNA_C-linearis_contig10.439.1|Name=mRNA_C-linearis_contig10.439.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1908bp|location=Sequence derived from alignment at C-linearis_contig10:216103..220918+ (Chordaria linearis ClinC8C monoicous)back to top |