Homology
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match:
A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE)
HSP 1 Score: 119 bits (298), Expect = 1.140e-25
Identity = 76/139 (54.68%), Postives = 94/139 (67.63%), Query Frame = 3
Query: 246 SQAAGERQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSGGPKTKNPAQAPKKGRPKNKRGG--------------GATGSAPPTTGNPEGRLDNSRRNTRMRDSCGPGSG---KRIKTE 611
++AA R A+D+RRVFA+MMAKSKENVSEILRTV KA+E+QA++D+ V+F+L + +G KNPAQ K GRPK + G G TGSA P GNP+GR+D SRR RMRDS GPGSG +RIK E
Sbjct: 462 AKAAAARSATDERRVFASMMAKSKENVSEILRTVPHAKAMEIQADLDKWVRFQLAEATGQNSAKNPAQVKKAGRPKKSKSGEQQEKRGDGNGAPPGQTGSAKPV-GNPQGRMDKSRRAKRMRDSAGPGSGGPSRRIKKE 599
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match:
A0A6H5L2H3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H3_9PHAE)
HSP 1 Score: 99.8 bits (247), Expect = 4.490e-19
Identity = 63/129 (48.84%), Postives = 83/129 (64.34%), Query Frame = 3
Query: 246 SQAAGERQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSGGPKTKNPAQAPKKGRPKNKRGGGA-------------TGSAPPTTGNPEGRLDNSRRNTRMRDSCGPGSG 593
++A +R SD RRVFAT+MAK+KENV+EI+RTV KALE+QAE+D+ V+F+L + +G K+ NPAQ KGRPK + G+ +GS P GNPEGR D SRR ++D G GSG
Sbjct: 419 AKAVADRSGSDHRRVFATLMAKNKENVTEIMRTVPHAKALEIQAELDKWVRFELAEATGENKSGNPAQVKAKGRPKKSKSEGSKQDRHDDNGAPADSGSVQPV-GNPEGRRDKSRREKMIKDVSGAGSG 546
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match:
A0A6H5KGV5_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV5_9PHAE)
HSP 1 Score: 94.7 bits (234), Expect = 8.760e-18
Identity = 67/141 (47.52%), Postives = 86/141 (60.99%), Query Frame = 3
Query: 201 AKVYDPIINCRLSSPSQAAGERQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSG-------GPKTKNPAQAPKKGRPKN--KRGGGATGSAPPTTGNPEGRLDNSRRNTRMRDSCGPGSGK 596
A +YD + + P A R+ +DQRR FATMMAKSKENVSEILR+V +ALE+Q +D+ VKF+L G GP NP APKKGRPK K+ G G + + NPEG++ + + TR RDS GPGSG+
Sbjct: 242 APIYDNNGDMDGALPQDA---RKVADQRRAFATMMAKSKENVSEILRSVNTAEALEIQRAVDECVKFQLTKRLGMLDGTAIGPG--NPEMAPKKGRPKGSTKQATGTIGQSKARSRNPEGQMGTTLKKTRFRDSYGPGSGR 377
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match:
A0A6H5K7Y9_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y9_9PHAE)
HSP 1 Score: 94.4 bits (233), Expect = 2.580e-17
Identity = 62/120 (51.67%), Postives = 78/120 (65.00%), Query Frame = 3
Query: 264 RQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSG-------GPKTKNPAQAPKKGRPKN--KRGGGATGSAPPTTGNPEGRLDNSRRNTRMRDSCGPGSGK 596
R+ +DQRR FATMMAKSKENVSEILR+V +ALE+Q +D+ VKF+L G GP NP APKKGRPK K+ G G + + NPEG++ + + TR RDS GPGSG+
Sbjct: 399 RKVTDQRRAFATMMAKSKENVSEILRSVNTAEALEIQRAVDECVKFQLTKRLGMLDGTAIGPG--NPEMAPKKGRPKGSTKQATGTIGQSKARSRNPEGQMGTTLKKTRFRDSYGPGSGR 516
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match:
A0A6H5JYU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU5_9PHAE)
HSP 1 Score: 90.1 bits (222), Expect = 5.220e-16
Identity = 59/118 (50.00%), Postives = 74/118 (62.71%), Query Frame = 3
Query: 240 SPSQAAGERQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSGGPKTKNPAQAPKKGRPKNKRGGGA-------------TGSAPPTTGNPEGRLDNSRR 554
S ++AA ER ASD R VFAT+MAK+KENV+E RT KALE+QAE+D+ V+F+L D +G K+ NPAQ KGRP + G+ +GS P GNPEGR D SRR
Sbjct: 347 SAAKAAAERSASDHRHVFATLMAKNKENVTETRRTAPHAKALEIQAELDKWVRFQLADATGENKSGNPAQVKAKGRPNKSKSEGSKQDRHDDNGAPADSGSVQPV-GNPEGRTDKSRR 463
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match:
A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE)
HSP 1 Score: 88.6 bits (218), Expect = 3.160e-15
Identity = 60/120 (50.00%), Postives = 75/120 (62.50%), Query Frame = 3
Query: 264 RQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSG-------GPKTKNPAQAPKKGRPKN--KRGGGATGSAPPTTGNPEGRLDNSRRNTRMRDSCGPGSGK 596
R+ +DQRR FATMMAKSKENVSEILR V +ALE+Q +D+ VKF+L G GP NP APK GRPK K+ G G + + NPEG++ + TR+RDS GP SG+
Sbjct: 803 RKVADQRRAFATMMAKSKENVSEILRPVNTAEALEIQRAVDECVKFQLTKRLGMLDGTAIGPG--NPEMAPKNGRPKGSTKQATGTIGQSKARSRNPEGQMGTTLEKTRLRDSYGPRSGR 920
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match:
A0A6H5JZB4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB4_9PHAE)
HSP 1 Score: 81.3 bits (199), Expect = 7.990e-13
Identity = 43/76 (56.58%), Postives = 60/76 (78.95%), Query Frame = 3
Query: 246 SQAAGERQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSGGPKTKNPAQAPKKGRPK 473
++AA +R ASD RRVFAT+MA++KENV+EI++TV KA E+QAE+D+ V+F+L + +G K+ NPAQ KGRPK
Sbjct: 908 AKAAADRSASDHRRVFATLMARNKENVTEIMKTVPHAKASEIQAELDKWVRFQLAEATGEKKSGNPAQVKAKGRPK 983
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match:
A0A6H5KFX8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX8_9PHAE)
HSP 1 Score: 77.0 bits (188), Expect = 9.140e-12
Identity = 52/101 (51.49%), Postives = 65/101 (64.36%), Query Frame = 3
Query: 264 RQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSG-------GPKTKNPAQAPKKGRPKN--KRGGGATGSAPPTTGNPEGRL 539
R+ +DQRR FATMMAKSKENVSEILR+V +ALE+Q +D+ VKF+L G GP NP APKKGRPK K+ G G + + NPEG++
Sbjct: 249 RKVADQRRAFATMMAKSKENVSEILRSVNTAEALEIQRAVDECVKFQLTKRLGMLDGTAIGPG--NPEMAPKKGRPKGSTKQATGTIGQSKARSRNPEGQM 347
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match:
A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE)
HSP 1 Score: 76.6 bits (187), Expect = 2.740e-11
Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 3
Query: 237 SSPSQAAGERQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSGGPKTKNPAQAPKKGRPKN---KRGGGATGSAPPTTGNPEGRLDNSRRNTRMRD 572
+ P A +R ASD+RRV+A +MAKSKE V +I+R+V +AL +Q ++ + +++ L+ +GG +NP +APKKGRPK ++ A GNPEG+ SR+ RMRD
Sbjct: 1293 TEPGGGAQDRSASDKRRVYAHLMAKSKELVGDIMRSVPLHQALSVQDKVGEYLRYLLNSSAGGTGAQNPGEAPKKGRPKKDGRRQPLQHRSGAKEEPGNPEGQQGKSRQTKRMRD 1407
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match:
A0A6H5LMA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMA8_9PHAE)
HSP 1 Score: 70.5 bits (171), Expect = 3.250e-11
Identity = 47/103 (45.63%), Postives = 65/103 (63.11%), Query Frame = 3
Query: 303 MAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSGGPKTKNPAQAPKKGRPKNKRGGGA-------------TGSAPPTTGNPEGRLDNSRRNTRMRD 572
MAK+KE+V+EI+RTV KALE+QAE+D+ V+F+L + +G K+ N AQ KGRPK + G+ +GS P GNPEGR D SRR R+++
Sbjct: 1 MAKNKESVTEIMRTVPHAKALEIQAELDKWVRFQLAEATGENKSGNSAQVKAKGRPKKSKSEGSKQDRHDDNGAPADSGSVQPV-GNPEGRRDKSRREKRIKE 102
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 16
0 1 Expect = 1.14e-25 / Id = 54.68 Expect = 4.49e-19 / Id = 48.84 Expect = 8.76e-18 / Id = 47.52 Expect = 2.58e-17 / Id = 51.67 Expect = 5.22e-16 / Id = 50.00 Expect = 3.16e-15 / Id = 50.00 Expect = 7.99e-13 / Id = 56.58 Expect = 9.14e-12 / Id = 51.49 Expect = 2.74e-11 / Id = 41.74 Expect = 3.25e-11 / Id = 45.63 Sequence A0A6H5JY17_9PHAE A0A6H5L2H3_9PHAE A0A6H5KGV5_9PHAE A0A6H5K7Y9_9PHAE A0A6H5JYU5_9PHAE A0A6H5KG54_9PHAE A0A6H5JZB4_9PHAE A0A6H5KFX8_9PHAE A0A6H5K9T1_9PHAE A0A6H5LMA8_9PHAE Pages
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.436.1
>prot_C-linearis_contig10.436.1 ID=prot_C-linearis_contig10.436.1|Name=mRNA_C-linearis_contig10.436.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=202bp
MSQARRMAGKGRTSNAYLSTGNRHYNVLSELKDLLAQILDNPRGDTDGIA back to top mRNA from alignment at C-linearis_contig10:171585..173403-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.436.1 ID=mRNA_C-linearis_contig10.436.1|Name=mRNA_C-linearis_contig10.436.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1819bp|location=Sequence derived from alignment at C-linearis_contig10:171585..173403- (Chordaria linearis ClinC8C monoicous)AGCTCGTACAC ATGTCACAGGCAAGGCGAATGGCGGGAAAGGGTAGGACG
AGCAACGCATATCTGTCGACCGGGAACCGGCACTACAATGTGCTGTCGGA
GTTGAAGGACCTTCTTGCACAGATCCTGGACAACCCTAGAGGGGACACAG
ACGGCATTGCTGTCAATCACCCGCAGTTGCGGGCAGCACGACTGAGGGCG
GCGAAGGTGTATGATCCCATCATCAACTGCCGTCTGTCTTCACCGTCCCA
G GTGTGTTCTTTTAGACCGATGGCACACATTTAGCCATCCATGTGCTTTA
TTGTTCGCGTTTACAGCAGTAGTTTTGTTCTTCCTCCCATGTCGCTCAAC
CGCGGACAAATACGGACAAAAAAAAGGGTACGCACAGGGTATCGGCAGGG
TGTACCCGCGGGGGTATGTACGTTTTTTGTCGCTTTTGTATCGTTTTTGT
ATCGGTGTGTTCCGTTGTATTTTCTTATTTCTGGGTGTTCGCGAAGAGCT
GAATCGGTTTTGGTCTTCAAGCCAAAATAAGTCAAAATCAATATCAAACG
AAAACAAAACCAAACCAAACCTGAATCGCGAACCTGAATTCGCGAATTCG
GAATTTGGACCGACAAGTGTATGCGAAGAGCAGAGCGGTTGTGGGCTGGG
TTCGGTGTGGAAGTTCGAACGTGATGTCAGTTAGCTTTGAACAATATGAG
AGCCCTTTGGCCATTTTCTTCCTTCGCACACACACACACACACGCCCACA
CATGCACACAACACCTTCTTCGTGTGCTTTCGGGCACGTAGTAATATCCT
CAATACACGGCGCTGAAACATCCGGTTGTCTCGTGATAGCTGCTGTCACA
TGAGTGTCAAATGAGAGAACGTGCAGCGCAGGCAGCTGGAGAACGACAAG
CGTCCGACCAGCGCCGAGTGTTCGCGACTATGATGGCGAAGAGCAAGGAA
AACGTCAGCGAAATTCTGAGGACGGTTACGTTCGACAAGGCGCTGGAGCT
ACAGGCAGAAATTGACCAGCTGGTCAAGTTCAAGCTGCATGACCCGAGCG
GTGGCCCAAAGACAAAGAATCCAGCGCAAGCCCCGAAGAAAGGGAGACCA
AAAAATAAGAGGGGGGGAGGGGCAACCGGCTCTGCTCCGCCAACAACCGG
CAACCCTGAGGGGCGGCTAGACAATAGCCGTAGGAATACAAGGATGAGAG
ACAGTTGCGGGCCTGGGTCGGGGAAAAGGATTAAGACGGAGAAATGA ACC
GCCACCGTGAACCCGAAGGGTAGCGTTAACGGGCAACCCATGTGGCGGGT
GGGGGCGCTTGTGTGGGGACAGGAGGTAAAGTCGGCGTTGTTGAGAGTGC
GCCCATGACGCCGTTAAATATTCCTTGTTCAATAGCTACACCCCGGGGTG
CAAGGGGCCGTTGGCCATCTGCGAGTGAAGCGGACGAGATTGCTTAGAAG
GCAAGCCTGTAAAGAGCGAACATGAATTATGGTCAACTTTCGACTTACCC
CTCCTGTAATGTGTTGCACGTGTGTTTTAAATCGCTATATCTACACAAGG
TTGCCGACGATCACAGTTCGACCACGCCGCCTAAGGGCAACGTCGCGCCT
TAGGGGAGGAGGACAAGGAATAGATGTAGCGGGGCCGGCAGGGGGGATGT
CCGCAACTGCTTGTTTGTCTATCACATTCCCTAACCCAACGCAATACTAG
TCGACGATTATATTTGGGCCAATCGTCATGAGGATTCACCGTAATGAATA
ATGTAGATAGCTGTGAGCCGTGGGAGCCCAATGCAACTTATTCTGAGCCA
AACAATGCCCAGTACGCAG back to top Coding sequence (CDS) from alignment at C-linearis_contig10:171585..173403-
>mRNA_C-linearis_contig10.436.1 ID=mRNA_C-linearis_contig10.436.1|Name=mRNA_C-linearis_contig10.436.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at C-linearis_contig10:171585..173403- (Chordaria linearis ClinC8C monoicous) back to top