mRNA_C-linearis_contig10.436.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE) HSP 1 Score: 119 bits (298), Expect = 1.140e-25 Identity = 76/139 (54.68%), Postives = 94/139 (67.63%), Query Frame = 3 Query: 246 SQAAGERQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSGGPKTKNPAQAPKKGRPKNKRGG--------------GATGSAPPTTGNPEGRLDNSRRNTRMRDSCGPGSG---KRIKTE 611
++AA R A+D+RRVFA+MMAKSKENVSEILRTV KA+E+QA++D+ V+F+L + +G KNPAQ K GRPK + G G TGSA P GNP+GR+D SRR RMRDS GPGSG +RIK E
Sbjct: 462 AKAAAARSATDERRVFASMMAKSKENVSEILRTVPHAKAMEIQADLDKWVRFQLAEATGQNSAKNPAQVKKAGRPKKSKSGEQQEKRGDGNGAPPGQTGSAKPV-GNPQGRMDKSRRAKRMRDSAGPGSGGPSRRIKKE 599
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match: A0A6H5L2H3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H3_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 4.490e-19 Identity = 63/129 (48.84%), Postives = 83/129 (64.34%), Query Frame = 3 Query: 246 SQAAGERQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSGGPKTKNPAQAPKKGRPKNKRGGGA-------------TGSAPPTTGNPEGRLDNSRRNTRMRDSCGPGSG 593
++A +R SD RRVFAT+MAK+KENV+EI+RTV KALE+QAE+D+ V+F+L + +G K+ NPAQ KGRPK + G+ +GS P GNPEGR D SRR ++D G GSG
Sbjct: 419 AKAVADRSGSDHRRVFATLMAKNKENVTEIMRTVPHAKALEIQAELDKWVRFELAEATGENKSGNPAQVKAKGRPKKSKSEGSKQDRHDDNGAPADSGSVQPV-GNPEGRRDKSRREKMIKDVSGAGSG 546
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match: A0A6H5KGV5_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV5_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 8.760e-18 Identity = 67/141 (47.52%), Postives = 86/141 (60.99%), Query Frame = 3 Query: 201 AKVYDPIINCRLSSPSQAAGERQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSG-------GPKTKNPAQAPKKGRPKN--KRGGGATGSAPPTTGNPEGRLDNSRRNTRMRDSCGPGSGK 596
A +YD + + P A R+ +DQRR FATMMAKSKENVSEILR+V +ALE+Q +D+ VKF+L G GP NP APKKGRPK K+ G G + + NPEG++ + + TR RDS GPGSG+
Sbjct: 242 APIYDNNGDMDGALPQDA---RKVADQRRAFATMMAKSKENVSEILRSVNTAEALEIQRAVDECVKFQLTKRLGMLDGTAIGPG--NPEMAPKKGRPKGSTKQATGTIGQSKARSRNPEGQMGTTLKKTRFRDSYGPGSGR 377
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match: A0A6H5K7Y9_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y9_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 2.580e-17 Identity = 62/120 (51.67%), Postives = 78/120 (65.00%), Query Frame = 3 Query: 264 RQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSG-------GPKTKNPAQAPKKGRPKN--KRGGGATGSAPPTTGNPEGRLDNSRRNTRMRDSCGPGSGK 596
R+ +DQRR FATMMAKSKENVSEILR+V +ALE+Q +D+ VKF+L G GP NP APKKGRPK K+ G G + + NPEG++ + + TR RDS GPGSG+
Sbjct: 399 RKVTDQRRAFATMMAKSKENVSEILRSVNTAEALEIQRAVDECVKFQLTKRLGMLDGTAIGPG--NPEMAPKKGRPKGSTKQATGTIGQSKARSRNPEGQMGTTLKKTRFRDSYGPGSGR 516
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match: A0A6H5JYU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU5_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 5.220e-16 Identity = 59/118 (50.00%), Postives = 74/118 (62.71%), Query Frame = 3 Query: 240 SPSQAAGERQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSGGPKTKNPAQAPKKGRPKNKRGGGA-------------TGSAPPTTGNPEGRLDNSRR 554
S ++AA ER ASD R VFAT+MAK+KENV+E RT KALE+QAE+D+ V+F+L D +G K+ NPAQ KGRP + G+ +GS P GNPEGR D SRR
Sbjct: 347 SAAKAAAERSASDHRHVFATLMAKNKENVTETRRTAPHAKALEIQAELDKWVRFQLADATGENKSGNPAQVKAKGRPNKSKSEGSKQDRHDDNGAPADSGSVQPV-GNPEGRTDKSRR 463
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 3.160e-15 Identity = 60/120 (50.00%), Postives = 75/120 (62.50%), Query Frame = 3 Query: 264 RQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSG-------GPKTKNPAQAPKKGRPKN--KRGGGATGSAPPTTGNPEGRLDNSRRNTRMRDSCGPGSGK 596
R+ +DQRR FATMMAKSKENVSEILR V +ALE+Q +D+ VKF+L G GP NP APK GRPK K+ G G + + NPEG++ + TR+RDS GP SG+
Sbjct: 803 RKVADQRRAFATMMAKSKENVSEILRPVNTAEALEIQRAVDECVKFQLTKRLGMLDGTAIGPG--NPEMAPKNGRPKGSTKQATGTIGQSKARSRNPEGQMGTTLEKTRLRDSYGPRSGR 920
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match: A0A6H5JZB4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB4_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 7.990e-13 Identity = 43/76 (56.58%), Postives = 60/76 (78.95%), Query Frame = 3 Query: 246 SQAAGERQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSGGPKTKNPAQAPKKGRPK 473
++AA +R ASD RRVFAT+MA++KENV+EI++TV KA E+QAE+D+ V+F+L + +G K+ NPAQ KGRPK
Sbjct: 908 AKAAADRSASDHRRVFATLMARNKENVTEIMKTVPHAKASEIQAELDKWVRFQLAEATGEKKSGNPAQVKAKGRPK 983
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match: A0A6H5KFX8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX8_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 9.140e-12 Identity = 52/101 (51.49%), Postives = 65/101 (64.36%), Query Frame = 3 Query: 264 RQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSG-------GPKTKNPAQAPKKGRPKN--KRGGGATGSAPPTTGNPEGRL 539
R+ +DQRR FATMMAKSKENVSEILR+V +ALE+Q +D+ VKF+L G GP NP APKKGRPK K+ G G + + NPEG++
Sbjct: 249 RKVADQRRAFATMMAKSKENVSEILRSVNTAEALEIQRAVDECVKFQLTKRLGMLDGTAIGPG--NPEMAPKKGRPKGSTKQATGTIGQSKARSRNPEGQM 347
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 2.740e-11 Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 3 Query: 237 SSPSQAAGERQASDQRRVFATMMAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSGGPKTKNPAQAPKKGRPKN---KRGGGATGSAPPTTGNPEGRLDNSRRNTRMRD 572
+ P A +R ASD+RRV+A +MAKSKE V +I+R+V +AL +Q ++ + +++ L+ +GG +NP +APKKGRPK ++ A GNPEG+ SR+ RMRD
Sbjct: 1293 TEPGGGAQDRSASDKRRVYAHLMAKSKELVGDIMRSVPLHQALSVQDKVGEYLRYLLNSSAGGTGAQNPGEAPKKGRPKKDGRRQPLQHRSGAKEEPGNPEGQQGKSRQTKRMRD 1407
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Match: A0A6H5LMA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMA8_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 3.250e-11 Identity = 47/103 (45.63%), Postives = 65/103 (63.11%), Query Frame = 3 Query: 303 MAKSKENVSEILRTVTFDKALELQAEIDQLVKFKLHDPSGGPKTKNPAQAPKKGRPKNKRGGGA-------------TGSAPPTTGNPEGRLDNSRRNTRMRD 572
MAK+KE+V+EI+RTV KALE+QAE+D+ V+F+L + +G K+ N AQ KGRPK + G+ +GS P GNPEGR D SRR R+++
Sbjct: 1 MAKNKESVTEIMRTVPHAKALEIQAELDKWVRFQLAEATGENKSGNSAQVKAKGRPKKSKSEGSKQDRHDDNGAPADSGSVQPV-GNPEGRRDKSRREKRIKE 102 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.436.1 >prot_C-linearis_contig10.436.1 ID=prot_C-linearis_contig10.436.1|Name=mRNA_C-linearis_contig10.436.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=202bp MSQARRMAGKGRTSNAYLSTGNRHYNVLSELKDLLAQILDNPRGDTDGIAback to top mRNA from alignment at C-linearis_contig10:171585..173403- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.436.1 ID=mRNA_C-linearis_contig10.436.1|Name=mRNA_C-linearis_contig10.436.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1819bp|location=Sequence derived from alignment at C-linearis_contig10:171585..173403- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:171585..173403- >mRNA_C-linearis_contig10.436.1 ID=mRNA_C-linearis_contig10.436.1|Name=mRNA_C-linearis_contig10.436.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at C-linearis_contig10:171585..173403- (Chordaria linearis ClinC8C monoicous)back to top |