Homology
BLAST of mRNA_C-linearis_contig10.435.1 vs. uniprot
Match: A0A6H5L1X5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1X5_9PHAE) HSP 1 Score: 123 bits (309), Expect = 1.560e-32 Identity = 65/130 (50.00%), Postives = 88/130 (67.69%), Query Frame = 1 Query: 178 LGLSREDMNTTVNAVSQATIASMLASLEDQLNAYNATHPAEEDASSQSTAGSSQSAPV--AVAVRTTQAPGFDLIGRARAWLHEREDPADGGGGKKNQEFNVVLFKNLHNVYQKNLAKCKHKSCGNIDDA 561
+GLSR++M +N + Q I++M+ SL +N+ P + DASSQ T SSQS+P + ++ QAPGFDL+ RARAW+ R+ PA+GGG K NQ+F V FKN HNVY+K +AKCK K CG +DDA
Sbjct: 1 MGLSRKEMCLLMNNIGQDIISNMMGSLGTDQRDFNSCQPKDADASSQETQESSQSSPADAVLQLQPEQAPGFDLLRRARAWVDARKLPAEGGGNKTNQDFLNVFFKNCHNVYKKRMAKCKDKKCGTLDDA 130
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 565 |
| Cds size | 561 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927321.8651655-CDS-C-linearis_contig10:126355..126437 | 1622927321.8651655-CDS-C-linearis_contig10:126355..126437 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 126356..126437 - |
| 1690879625.48781-CDS-C-linearis_contig10:126355..126437 | 1690879625.48781-CDS-C-linearis_contig10:126355..126437 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 126356..126437 - |
| 1622927321.8742247-CDS-C-linearis_contig10:127074..127343 | 1622927321.8742247-CDS-C-linearis_contig10:127074..127343 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 127075..127343 - |
| 1690879625.5442972-CDS-C-linearis_contig10:127074..127343 | 1690879625.5442972-CDS-C-linearis_contig10:127074..127343 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 127075..127343 - |
| 1622927321.8844597-CDS-C-linearis_contig10:127940..128150 | 1622927321.8844597-CDS-C-linearis_contig10:127940..128150 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 127941..128150 - |
| 1690879625.5655863-CDS-C-linearis_contig10:127940..128150 | 1690879625.5655863-CDS-C-linearis_contig10:127940..128150 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 127941..128150 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.435.1 >prot_C-linearis_contig10.435.1 ID=prot_C-linearis_contig10.435.1|Name=mRNA_C-linearis_contig10.435.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=187bp
QSQLGTEGPSAEHQARGIYAPGKRANGMFSYVLSRHSTLIAVSAESGEPE
REPYEAHEVLGLSREDMNTTVNAVSQATIASMLASLEDQLNAYNATHPAE
EDASSQSTAGSSQSAPVAVAVRTTQAPGFDLIGRARAWLHEREDPADGGG
GKKNQEFNVVLFKNLHNVYQKNLAKCKHKSCGNIDDA back to topmRNA from alignment at C-linearis_contig10:126354..128150- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig10.435.1 ID=mRNA_C-linearis_contig10.435.1|Name=mRNA_C-linearis_contig10.435.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1797bp|location=Sequence derived from alignment at C-linearis_contig10:126354..128150- (Chordaria linearis ClinC8C monoicous)
CAGAGCCAGCTTGGCACCGAAGGCCCTAGCGCGGAACACCAGGCCCGAGG
CATCTACGCACCGGGCAAGCGGGCCAACGGCATGTTCAGCTACGTGTTGA
GCCGCCACTCTACTCTGATCGCTGTGTCGGCGGAATCCGGCGAGCCAGAA
CGCGAGCCCTACGAGGCGCACGAGGTGCTTGGACTTTCGCGCGAAGACAT
GAACACAACGGTAAGTGCCAGTTTTTTTTCTCGGATGGGGCGTTCGGCTG
TTCTGCCGAAACGCCAAGCTCATTTCAATGTTGTAGACACACACGTGATC
GGTGGCAAAGGAGGGGATCGCAGGTCGACATAGCCCGAGGATAGCAAAAA
CTGGTTTATACCATGTGAAGCGTGTTGTTCCCCGTCCGCAGTTAGATCCC
GAGCCTGCTCATTTTTTCTCTGCTGAGTGAACGGTCACTGTCTCTTCCAA
CAGAGCTTGCTCAGAAAATCAAAGGGTGCGCAAACGCAGTCGCCCTCAGC
CGCTGAACTTGTTGCTTCTTGTACTCCATGCCCGCACAGGCAGCCTCCCC
CAACAGTAAAGTCGATGTCCACTCCGCGGCTCCCGGTTGCCCATTTCGAT
GGACGTTGGTTGTTGGCTTAGACTCGCGTCATCTAGTGACGTCCGTCCGT
GTCCGGCCCTAGGATACAGGGTGTAACACCAGCACAGGGAGCCCCTGCGG
TTTTTTTTTCGCGGTGCTGATTCACGCAGACCGCTCATGACTACGATGAA
CGCGACGAAGTCTTCGCGACGTTGTTGTACGCCATTCGTTTGTGCGCGCG
CCCACAGGTTAACGCCGTCAGCCAAGCAACCATTGCCAGCATGCTGGCGT
CCCTCGAAGACCAGCTGAACGCATACAACGCGACTCACCCGGCAGAGGAG
GATGCCAGCTCGCAGTCCACGGCAGGGTCTTCGCAGTCAGCTCCCGTAGC
TGTTGCAGTTCGGACGACGCAAGCCCCGGGCTTCGATCTCATTGGTCGAG
CCAGGGCGTGGCTGCACGAACGAGAGGACCCGGCGGACGGTGGGGGCGGC
AAAAAAAATCAAGAGTTCAACGTCGTGTGAGTGAGACCATATCGTTGTTT
CAGGCTGGAGGTCAAGCGCACAAACTCTTGGGTAGTTCGTGCAAAATGTT
GTTCTTGGGGTGTTTAGCTGTGTGACGAGCACAACTAGTCGATGGAAACA
TCCGAGAAAGCCAACCGCCGTCCGTATGTATGTGTGCGTCTCTTGTGTTG
CGGGATCATTCAATCCTAAAACCACCGCGCGGTGGATTACCACGAAACAC
TATTCCCGGCGTGTCCGCCCCCCTCATTCCTCAAACCGATCTCTACTCTA
CGCGCTCATCTGGTCTATTTGTAGGCGTTGTCGTTGTTGGCATGTCTGCT
CTACTCATACGTGTCGGATCGTATCGAGCTCGGCAACGGCGGTGCGAAAT
CACTACTGCGCAGCCCTTTGCCATGTTACACCTATTTGCATCCCTTGTAA
TGGGCCCAACACAACAACACTGCAGCCCTATTTCGATAGCGTGTAGCAAG
AGGAGTAATGGACTGCCTACCCTGCTGTGTTGGTTGGCAACGGCAACTCG
AGTGTTGGTTACCGCAGGAATCGCGTACTGACGACCCTGTCGATCGAATT
TCCTATGCATATGTTCTTGTACCACGCGCGCTGTCCTTGTTTCCTGGCGT
CGACTTTTCCCAGTCTGTTCAAGAACCTCCACAACGTATATCAGAAAAAC
CTGGCGAAGTGCAAGCACAAATCCTGCGGGAACATAGACGATGCGAA back to topCoding sequence (CDS) from alignment at C-linearis_contig10:126354..128150- >mRNA_C-linearis_contig10.435.1 ID=mRNA_C-linearis_contig10.435.1|Name=mRNA_C-linearis_contig10.435.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at C-linearis_contig10:126354..128150- (Chordaria linearis ClinC8C monoicous)
CAGAGCCAGCTTGGCACCGAAGGCCCTAGCGCGGAACACCAGGCCCGAGG
CATCTACGCACCGGGCAAGCGGGCCAACGGCATGTTCAGCTACGTGTTGA
GCCGCCACTCTACTCTGATCGCTGTGTCGGCGGAATCCGGCGAGCCAGAA
CGCGAGCCCTACGAGGCGCACGAGGTGCTTGGACTTTCGCGCGAAGACAT
GAACACAACGCAGAGCCAGCTTGGCACCGAAGGCCCTAGCGCGGAACACC
AGGCCCGAGGCATCTACGCACCGGGCAAGCGGGCCAACGGCATGTTCAGC
TACGTGTTGAGCCGCCACTCTACTCTGATCGCTGTGTCGGCGGAATCCGG
CGAGCCAGAACGCGAGCCCTACGAGGCGCACGAGGTGCTTGGACTTTCGC
GCGAAGACATGAACACAACGGTTAACGCCGTCAGCCAAGCAACCATTGCC
AGCATGCTGGCGTCCCTCGAAGACCAGCTGAACGCATACAACGCGACTCA
CCCGGCAGAGGAGGATGCCAGCTCGCAGTCCACGGCAGGGTCTTCGCAGT
CAGCTCCCGTAGCTGTTGCAGTTCGGACGACGCAAGCCCCGGGCTTCGAT
CTCATTGGTCGAGCCAGGGCGTGGCTGCACGAACGAGAGGACCCGGCGGA
CGGTGGGGGCGGCAAAAAAAATCAAGAGTTCAACGTCGTGTTAACGCCGT
CAGCCAAGCAACCATTGCCAGCATGCTGGCGTCCCTCGAAGACCAGCTGA
ACGCATACAACGCGACTCACCCGGCAGAGGAGGATGCCAGCTCGCAGTCC
ACGGCAGGGTCTTCGCAGTCAGCTCCCGTAGCTGTTGCAGTTCGGACGAC
GCAAGCCCCGGGCTTCGATCTCATTGGTCGAGCCAGGGCGTGGCTGCACG
AACGAGAGGACCCGGCGGACGGTGGGGGCGGCAAAAAAAATCAAGAGTTC
AACGTCGTTCTGTTCAAGAACCTCCACAACGTATATCAGAAAAACCTGGC
GAAGTGCAAGCACAAATCCTGCGGGAACATAGACGATGCGTCTGTTCAAG
AACCTCCACAACGTATATCAGAAAAACCTGGCGAAGTGCAAGCACAAATC
CTGCGGGAACATAGACGATGCG back to top
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