mRNA_C-linearis_contig1.114.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig1.114.1 vs. uniprot
Match: D7FJ00_ECTSI (Suppressor of lin-12-like protein-related / sel-1 protein-related n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ00_ECTSI) HSP 1 Score: 398 bits (1023), Expect = 2.920e-128 Identity = 215/371 (57.95%), Postives = 259/371 (69.81%), Query Frame = 1
Query: 1 LHSAIQSREYGSFDTPEIRTVEWS-SADGESLVLTFSASTNRPRLNDAVSINNALMLNHGDIELVAGRGAWSPGGEALTITDLDPENWRHIITAISDGTFHATPRKKLLVGAEIWGGDNSSLSSDPPAGQLRGNLTIRMVFPGYFTAHLFVGERLESTSAQVIEVQLCPNEVVMIAPKHSPPFSSEAPRSVFGADGVLSLPGDKFLKASLPKHFGVPSSLFAEHQRPPGGGFRSET-----QGSWSIAFWIYLVDLPTASFRGLFYKG-GGGEMGRTPSAWLCPNSNRIALRVTSETNPDIGADSIASLGTNTWNHVAFSFKNNTDGNFSATIFINGTLDISVGFNEQNVLSNTGPLHIGRDPSNKGPRRV 1092
+HS I S ++G+F PE+RT +WS DG +VL F+ TN P LN V +NNAL++N G+I + AGRG WS GE L+ITDLDP +WR I +IS G FH PR+K+LVGA+ GG S +LRG+LT+RM FPG F AHLFVGE+L+S SA++IEV CP +VV +A + S E P+ F ADGVLS+PGDK+LK VPSSLF +QR P GG +SE + SWS + WIYL+D T SFRGLFYKG GG MGRTPSAWLC +SNRIALRVTS+TNPDIGADS+ASL TWNHV F+F N T G FS+TIFINGTLDISV F+ VL N GPLHIGRD SN GPR +
Sbjct: 2 MHSVIHSWDHGAFKIPEVRTAKWSRGTDGAFVVLHFTEPTNCPPLNGDVDLNNALVINRGEITVTAGRGEWSANGEVLSITDLDPGSWRAITASISSGDFHVKPREKVLVGADNGGGKTGSPD------ELRGSLTMRMSFPGRFVAHLFVGEQLDS-SAEIIEVDFCPEQVV-VALSNPGSGSVEDPQPFFSADGVLSMPGDKWLK--------VPSSLF-HYQREPVGGIQSEQMTPGRRSSWSFSLWIYLLDDATGSFRGLFYKGDGGATMGRTPSAWLCSHSNRIALRVTSDTNPDIGADSVASLNAGTWNHVVFTFDNTTSGEFSSTIFINGTLDISVQFDGTTVLGNDGPLHIGRDTSNLGPRSL 355
BLAST of mRNA_C-linearis_contig1.114.1 vs. uniprot
Match: F0XWA6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWA6_AURAN) HSP 1 Score: 142 bits (359), Expect = 1.190e-33 Identity = 113/351 (32.19%), Postives = 163/351 (46.44%), Query Frame = 1
Query: 91 LVLTFSASTNRPRLNDAVSINNALMLNHGDIELVAGRGAWSPGGEALTITDLDPENWRHIITAISDGTFHATPRKKLLVGAEIWGGDNSSLSSDPPAGQLRGNLTIRMVFPGYFTAHLFVGERLESTSAQVIEVQLCPNEVVM------IAPKHSPPFSSEAPRSVFGADGVLSLPGDKFLKASLPKHFGVPSSLFAEHQRPPGGGFRSETQGSWSIAFWIYLVDLPTASFRGLFYKGGGGEMG--RTPSAWLCPNSNRIALRVTSETN-PDIGADSIASLGTNTWNHVAFSFKNNT-------DGNFSATIF---INGTLDISVGFNEQNVLSNTGPLHIGRDPSNKGPR 1086
+ L F A TN P + D + + N + L A W GG L P + I D +F A A W PPA + G +R+ G +TA L VG+ + + +A + V+ C + VV+ A +PP AP + A GV + GD LK +P+ + P G +G +S+AFWIY+ + P+ + RG+F+KG G +G RTPSAWL P+SNR+ALRV++ D+GAD+ L T W HV FSF N T DG + +F ++G D ++ F + V N G LH+GRDP +G R
Sbjct: 121 MALEFDAPTNAPPVADVAAFERLVRTN---VALRAASFRWDDGGRTLVARVNAPGDAEAIAARFEDRSFEAA--------AAPWPPPRK-----PPA-TVEGEARLRLAVAGEYTAALVVGDAVAAVAAATVTVEACADAVVVDVDRAAAAEALAPPAPPLAPW--WDARGVFATAGDNALK--------IPAE-----ELPLLG------RGDFSLAFWIYVAEEPSGAHRGVFFKGDVGRLGGARTPSAWLLPDSNRLALRVSTHAGGDDVGADTELPLPTYAWTHVVFSFANRTANPEPRADGRLARFVFGFYVDGRRDSTLDFYDD-VAWNDGALHLGRDPDRRGFR 432
BLAST of mRNA_C-linearis_contig1.114.1 vs. uniprot
Match: A0A7S3ZY42_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZY42_9STRA) HSP 1 Score: 130 bits (327), Expect = 1.730e-29 Identity = 102/352 (28.98%), Postives = 153/352 (43.47%), Query Frame = 1
Query: 46 PEIRTVEWSSADGESLVLTFSASTNRPRLNDAVSINNALMLNHGDIELVAGRGAWSPGGEALTITDLDPENWRHIITAISDGTFHATPRKKLLVGAEIWGGDNSSLSSDPPAGQLRGNLTIRMVFPGYFTAHLFVGERLESTSAQVIEVQLCPNEVVMIAPKHSPPFSSEAPRSVFGADGVLSLPGDKFLKASLPKHFGVPSSLFAEHQRPPGGGFRSETQGSWSIAFWIYLVDLPTASFRGLFYKGGGGEMG--RTPSAWLCPNSNRIALRVTSETNPDIGADSIASLGTNTWNHVAFSFKNNTDGN---FSATIFINGTLDISVGFNEQNVLSNTGPLHIGRDPSNKGPR 1086
P + + W+ AD ++ L F +TN P + D + + + N IEL A +W G+ L I P + +D A + W S PP L G +R+ + L R+ES + ++ V+ C V + S+ D L LPG V +S H P + Q W + FWIY+ D PT + RGLF+KG +G RTPSAWL P+SN++ALRV+++ DIGAD+ L W H+ F F N +D + + T+ ++G D ++ +Q V N GPL + RDP +G R
Sbjct: 135 PLLTAMRWN-ADSWTMTLEFEKATNAPPIKDVRAFDRLISTN---IELRALTASWEANGQHLAIHINAPND--------ADAVQEAFDSRSFWAACAPW----PPPSRHPPV--LSGEAVMRVPVASSYEVALVNDGRVESNAGSIL-VEACDGTFVSDIDR----VDDTLTESIDADDVWLELPG-------------VYASSGQRHISLPPEELPLQAQQDWGLEFWIYIEDAPTGAHRGLFFKGDVDRLGGQRTPSAWLAPDSNKVALRVSTDKGLDIGADTDTPLPVKKWTHLQFGFHNLSDASDVKYLLTLDVDGARDATLEIFDQ-VTWNDGPLQLFRDPDRRGVR 449
BLAST of mRNA_C-linearis_contig1.114.1 vs. uniprot
Match: A0A0P1ACA9_PLAHL (Extracellular protein SEL-1 and related proteins n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACA9_PLAHL) HSP 1 Score: 114 bits (284), Expect = 7.370e-24 Identity = 60/151 (39.74%), Postives = 85/151 (56.29%), Query Frame = 1
Query: 679 PGGGFRSETQGSWSIAFWIYLVDLPTASFRGLFYKGGGGEMGRTPSAWLCPNSNRIALRVTSETNPDIGADSIASLGTNTWNHVAFSFKN----NT-----------DGNFSATIFINGTLDISVGFNEQNVLSNTGPLHIGRDPSNKGPR 1086
P + ET GSWS++FW++L++ T FR LF+ G G RTPSAW PN R+ LRV++ T+ D+G DS + L W H+ F+F N NT N+S +++I+G LD + +E V NTGPL+IG+ P G R
Sbjct: 346 PHALIQMETPGSWSLSFWVFLIENCTGDFRSLFFHGDGENQQRTPSAWWKPNERRLVLRVSTTTSADVGIDSASELPLYEWVHMGFTFVNCSHSNTHEKCSLKESSQSWNYSYSLYIDGMLDTQMHIHES-VAPNTGPLYIGKGPGTDGMR 495
BLAST of mRNA_C-linearis_contig1.114.1 vs. uniprot
Match: A0A7S2WID4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WID4_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 6.880e-16 Identity = 88/360 (24.44%), Postives = 154/360 (42.78%), Query Frame = 1
Query: 79 DGESLVLTFSASTNRPRLNDAVSINNALMLNHGDIELVAGRGAWSPGGEALTITDLDPENWR-HIITAISDGTFHATPRKKLLVGAEIWGGDN--SSLSSDPPAGQ----LRGNLTIRMVFPGYFTAHLFVGERLESTS-AQVIEVQ-LCPNEVVMIAPKHSPPFSSEAPRSVFGADGVLSLPGDKFLKASLPKHFGVPSSLFAEHQRPPGGGFRSETQGSWSIAFWIYLVDLPTAS---------FRGLFYKGGGG--EMG-RTPSAWLCPNSNRIALRVTSETNPDIGADSIASLGTNTWNHVAFSFKNNTDGN----FSATIFINGTLDISVGFNEQNVLSNTGPLHIGRDPSNKGP 1083
DG S+ + F T+ P + +I N ++ + + G+ L+ +DP+ + +I+ + +H P + E + SSL++ + + ++G +++R+ F G F LF + E ++ ++ + E ++ ++S + ++ + + G + LP+ A+HQ G +WSI+FW+ + +S FR L Y G G E G RTPS WL P SN +ALRV++ + D G +S L W H+A +F+N T N + A IF +G + +E VL+ G LH G D GP
Sbjct: 161 DGASITVMFDRETDMPDVESDQAIRNVIVFS-------------ASIGQELSGQWIDPKTLKINIVDSTGHSDYHNEPVTARIGMRERRPSERLYSSLATLEGSHESDILVKGVVSVRIGFEGTFHVALFTLDETEPACVSEPFDINAISQQETTIVIGRNSVSQGDNRLKPIWSLKPKVVMTGSRL---KLPRVLNKARVAQADHQLFDGD--------AWSISFWLAIAPKAYSSRCSTVDNTHFRALLYHGAGKGHERGARTPSVWLFPGSNTLALRVSTVESSDFGINSKKQLTEGKWVHLAMTFENTTSENGSPRYKAKIFADGECILDFEESEHVVLATHGSLHFGHDAWTNGP 496
BLAST of mRNA_C-linearis_contig1.114.1 vs. uniprot
Match: A0A482RN31_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RN31_9ARCH) HSP 1 Score: 77.4 bits (189), Expect = 1.040e-11 Identity = 52/166 (31.33%), Postives = 80/166 (48.19%), Query Frame = 1
Query: 697 SETQGSWSIAFWIYLVDL----------PTASFRG----------------------LFYKGGGG-EMGRTPSAWLCPNSNRIALRVTSETNP----DIGADSIASLGTNTWNHVAFSFKNNTDGN-------FSATIFINGTLDISVGFNE-QNVLSNTGPLHIG 1059
++ GSW+++ W+++ P AS G LF+KG GG + GRTPSAW+ P+S + LRV S+ P D+G S ++ W H+AFSF+N++ + F+ +FI+G LD + F + +NTGPL IG
Sbjct: 362 AQNGGSWALSMWLWMASASNEDISTGACPVASDAGTGGEEACPGDSTCARPCRKPRVLFFKGVGGVDQGRTPSAWVAPDSEHLLLRV-SQIAPTQEADVGGRSFGAIPVRRWTHLAFSFENSSAESAQVDAPSFTYRLFIDGELDTQIAFPAGARISANTGPLFIG 526 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig1.114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig1.114.1 >prot_C-linearis_contig1.114.1 ID=prot_C-linearis_contig1.114.1|Name=mRNA_C-linearis_contig1.114.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=365bp LHSAIQSREYGSFDTPEIRTVEWSSADGESLVLTFSASTNRPRLNDAVSIback to top mRNA from alignment at C-linearis_contig1:1632590..1634361+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig1.114.1 ID=mRNA_C-linearis_contig1.114.1|Name=mRNA_C-linearis_contig1.114.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1772bp|location=Sequence derived from alignment at C-linearis_contig1:1632590..1634361+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig1:1632590..1634361+ >mRNA_C-linearis_contig1.114.1 ID=mRNA_C-linearis_contig1.114.1|Name=mRNA_C-linearis_contig1.114.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2190bp|location=Sequence derived from alignment at C-linearis_contig1:1632590..1634361+ (Chordaria linearis ClinC8C monoicous)back to top |