mRNA_C-linearis_contig1.113.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig1.113.1
Unique NamemRNA_C-linearis_contig1.113.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig1.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig1contigC-linearis_contig1:1604714..1605121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size409
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927264.0934658-CDS-C-linearis_contig1:1604713..16051211622927264.0934658-CDS-C-linearis_contig1:1604713..1605121Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1604714..1605121 +
1690879590.2295656-CDS-C-linearis_contig1:1604713..16051211690879590.2295656-CDS-C-linearis_contig1:1604713..1605121Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1604714..1605121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig1.113.1prot_C-linearis_contig1.113.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig1 1604714..1605121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig1.113.1

>prot_C-linearis_contig1.113.1 ID=prot_C-linearis_contig1.113.1|Name=mRNA_C-linearis_contig1.113.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=136bp
ESRTECVDLITHTDPLASTSSSVWSNPSSARHRRSLLSQRTCCCGLRGIL
GSGRVYEFALTGRRIKEGSPFFPTPSYSPVEAAPPAVFTEKAAPPAAVDA
AQVVENEPAATDDVAPRGWSPDARKVSFSSCRDLFS
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mRNA from alignment at C-linearis_contig1:1604714..1605121+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig1.113.1 ID=mRNA_C-linearis_contig1.113.1|Name=mRNA_C-linearis_contig1.113.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at C-linearis_contig1:1604714..1605121+ (Chordaria linearis ClinC8C monoicous)
GAAAGCAGGACAGAATGTGTTGATCTGATCACACACACAGATCCACTCGC
TTCGACCTCCTCAAGTGTGTGGTCCAACCCCTCGTCAGCTAGACACAGGC
GCAGTCTTCTTAGCCAACGCACTTGTTGTTGTGGGTTGCGGGGCATTTTA
GGTAGTGGGCGCGTGTACGAATTCGCTCTGACAGGTCGGCGGATAAAAGA
AGGATCTCCGTTTTTCCCCACACCTTCATACAGTCCCGTAGAAGCTGCCC
CTCCAGCAGTCTTCACCGAAAAAGCTGCCCCACCAGCAGCAGTGGATGCC
GCACAGGTAGTAGAGAATGAACCGGCAGCGACTGATGATGTAGCACCTAG
AGGCTGGTCTCCGGATGCTCGCAAAGTTTCTTTCTCCTCCTGTAGGGATC
TCTTCTCC
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Coding sequence (CDS) from alignment at C-linearis_contig1:1604714..1605121+

>mRNA_C-linearis_contig1.113.1 ID=mRNA_C-linearis_contig1.113.1|Name=mRNA_C-linearis_contig1.113.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at C-linearis_contig1:1604714..1605121+ (Chordaria linearis ClinC8C monoicous)
GAAAGCAGGACAGAATGTGTTGATCTGATCACACACACAGATCCACTCGC
TTCGACCTCCTCAAGTGTGTGGTCCAACCCCTCGTCAGCTAGACACAGGC
GCAGTCTTCTTAGCCAACGCACTTGTTGTTGTGGGTTGCGGGGCATTTTA
GGTAGTGGGCGCGTGTACGAATTCGCTCTGACAGGTCGGCGGATAAAAGA
AGGATCTCCGTTTTTCCCCACACCTTCATACAGTCCCGTAGAAGCTGCCC
CTCCAGCAGTCTTCACCGAAAAAGCTGCCCCACCAGCAGCAGTGGATGCC
GCACAGGTAGTAGAGAATGAACCGGCAGCGACTGATGATGTAGCACCTAG
AGGCTGGTCTCCGGATGCTCGCAAAGTTTCTTTCTCCTCCTGTAGGGATC
TCTTCTCCGAAAGCAGGACAGAATGTGTTGATCTGATCACACACACAGAT
CCACTCGCTTCGACCTCCTCAAGTGTGTGGTCCAACCCCTCGTCAGCTAG
ACACAGGCGCAGTCTTCTTAGCCAACGCACTTGTTGTTGTGGGTTGCGGG
GCATTTTAGGTAGTGGGCGCGTGTACGAATTCGCTCTGACAGGTCGGCGG
ATAAAAGAAGGATCTCCGTTTTTCCCCACACCTTCATACAGTCCCGTAGA
AGCTGCCCCTCCAGCAGTCTTCACCGAAAAAGCTGCCCCACCAGCAGCAG
TGGATGCCGCACAGGTAGTAGAGAATGAACCGGCAGCGACTGATGATGTA
GCACCTAGAGGCTGGTCTCCGGATGCTCGCAAAGTTTCTTTCTCCTCCTG
TAGGGATCTCTTCTCC
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