mRNA_C-linearis_contig1.112.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig1.112.1 vs. uniprot
Match: D7FJ02_ECTSI (CTP_transf_like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ02_ECTSI) HSP 1 Score: 432 bits (1110), Expect = 9.540e-142 Identity = 259/448 (57.81%), Postives = 302/448 (67.41%), Query Frame = 3
Query: 99 RLWQRVRHIESNLGYSNLAFEGCRPRRHNKAHGAGN--------------RQWQLPREGVSARVQGSAT-QRDLLNSRSVPALSLPSEEHSTPPWTQPISQHDVGCGTLPRLLEPPQNYETTRALEGAQDNSMTGNPGAAETVGDGRPSEARRQSSLSSDKG----PEGG---------VSPGR--RSKENRVNFPVQTQALAERDFADDRGVDSGGAVRTPPRKVEELAEGAVGAAFDAQASDAPSDLDITPKVAESHQHRSFVVRTLPSGNKLRTVRAGRCRSLVSPNNKVFSSTVVARVKQGLQNGDDEKRPKVLIVGSGTFNPIHKIHIRRFYLARNFLQVQKGMRVVGGILSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGEGSWLAVDPWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNP 1352
R W+RVR +ES+LGYSNLAFEG R + HG N R+ +LP G S VQGS +R+ SRSVPAL LPSEE STP W QP + +G G LP+L Q ++ R+L+G Q++SM ET G G + SSLS + P G +SP R RS +RV P+Q + + D+R VDS G V P + E AEG +F A + D P + DI P E+ R VV+++PSG KLRTVRAGRCRSLVSPNN S+ VVARVKQG +NG+DE R KVLIVGSGTFNP+HKIHIRRFYLARN+L++QKGMRVVGGI+SPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVG+GSWLAVD WEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQ+ P
Sbjct: 22 RRWKRVRTLESSLGYSNLAFEGDRKKFSQDVHGVVNPKLPTDGFESANHHRKRRLPSVGRSPSVQGSTPPRREFGVSRSVPAL-LPSEEQSTPSWEQPAAV--LGRGNLPQLPGTRQEEQSNRSLKGPQESSMV------ETTGSGVVRKPSMDSSLSWKEELMGQPSRGFLQHAERTVLSPERSSRSHRSRVFSPLQASVPSGPECGDNRDVDSNGDVGMTPCVMFEAAEGTSSKSFGALSKDLPRNRDILPDNFENRDSRRLVVKSVPSGKKLRTVRAGRCRSLVSPNNPFTSNAVVARVKQGFKNGEDETRSKVLIVGSGTFNPVHKIHIRRFYLARNYLEMQKGMRVVGGIVSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGKGSWLAVDSWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQVMGFPP 460
BLAST of mRNA_C-linearis_contig1.112.1 vs. uniprot
Match: A0A6U0UYK4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UYK4_9STRA) HSP 1 Score: 226 bits (576), Expect = 2.500e-63 Identity = 128/285 (44.91%), Postives = 181/285 (63.51%), Query Frame = 3
Query: 834 RTVRAGRCRSLVSPNNKVF--------SSTVVARVKQ-GLQNGDDEKRP-KVLIVGSGTFNPIHKIHIRRFYLARNFLQVQKGMRVVGGILSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGEGSWLAVDPWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKASLLKELSP-------SFRNIAILVEDSTILSAEMERTSSNMVRHLLKQGKPVEGMVGKAVARYIRDNTIAERVSGRQKWTVE 1637
+T A R SL SP+ K SST + + G+Q + P +VL+V SG +NPIHK+H+R YLAR FL+ + G+RV+GGI+SPSH TLVRQ+ R EIIPP+HRL+MAR VG+ WL+VD WE+TR+RIMDY+SVL H +EV T+PG I I+Y+ + + L+P LR GFG + VCRP+E LL++++ + +A +VED+ +L+ E+ERT+S+ VR L GK VE MVG +VA Y R + I ++++G +W E
Sbjct: 107 KTPPAFRSGSLGSPSPKASVEVSPLQTSSTASPQDRSTGIQRKAQAQAPTRVLLVASGAYNPIHKLHLRMLYLAREFLEQRAGLRVLGGIISPSHATLVRQQQRRTVKEIIPPRHRLNMARLLVGDSLWLSVDAWEITRRRIMDYLSVLHHVREVAERTWPG--VPIRIVYLTKPYGMLKLSPRALREHGFGCLCVCRPVESERLLRQMAVYDSLEKNPWEGVAHVVEDAAMLTHELERTTSSAVRSDLMAGKSVEAMVGPSVAAYARKHAIGDKMAGGAQWQPE 389
BLAST of mRNA_C-linearis_contig1.112.1 vs. uniprot
Match: A0A7S2B1H5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B1H5_9STRA) HSP 1 Score: 224 bits (571), Expect = 4.860e-60 Identity = 109/232 (46.98%), Postives = 154/232 (66.38%), Query Frame = 3
Query: 939 DEKRPKVLIVGSGTFNPIHKIHIRRFYLARNFLQVQKGMRVVGGILSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGEGSWLAVDPWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKASLLKELSPSFRNIAILVEDSTILSAEMERTSSNMVRHLLKQGKPVEGMVGKAVARYIRDNTIAERVSGRQKWTV 1634
+E R +V++VGSG +NPIHK+H+R FY+AR +L+ V+GG++SP+H T VR ++R R EIIPPKHRL+MAR AVG+ +WL VDPWE+TR+R+MDY+SVL+H + + FPG I I+ +C S + L+P LR +G + +CRP E L+ L +RN+A +VED+ ILS E+E T S VR G VE MVG VA YI + +++GR++W V
Sbjct: 424 NEGRKQVILVGSGAYNPIHKMHLRNFYIARKYLEEHTTYEVLGGLVSPAHATEVRSKYRQRPREIIPPKHRLAMARKAVGDSTWLTVDPWEITRRRVMDYLSVLDHVQTLFDSCFPGLP--IKIILLCNPSVLVKLSPDDLRDHNYGCLCICRPQETDQLMDTLGSRWRNVAYVVEDAAILSRELEATGSRRVRETAMAGGKVEAMVGAPVANYIVKEKLGNKMAGRERWNV 653
BLAST of mRNA_C-linearis_contig1.112.1 vs. uniprot
Match: A0A7S1XLJ5_9STRA (Hypothetical protein n=13 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLJ5_9STRA) HSP 1 Score: 213 bits (542), Expect = 1.220e-55 Identity = 109/232 (46.98%), Postives = 155/232 (66.81%), Query Frame = 3
Query: 954 KVLIVGSGTFNPIHKIHIRRFYLARNFLQVQKGMRVVGGILSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGEGSWLAVDPWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKASLLKELS-------PSFRNIAILVEDSTILSAEMERTSSNMVRHLLKQGKPVEGMVGKAVARYIRDNTIAERVSGRQKW 1628
KVL+V SG +NPIHK+H+R YLAR FL+ + GM VVGGI+SPSH TLVRQ+ R +IIP +HRL+MAR VG WL VD WE+TR+RIMDY+SVL H +EV T+PGH I ++Y+ + + L+P LR G+G + VCRP+E LLK+++ + +A +VED+ +L+ E+ERT+S VR L G+ V+ MVG +V+ Y + + +++G +KW
Sbjct: 487 KVLLVASGAYNPIHKMHLRMLYLARQFLE-RAGMEVVGGIISPSHATLVRQKQRRNVKQIIPQRHRLNMARLMVGGSQWLTVDAWEITRRRIMDYLSVLHHVREVAERTWPGHT--IRVVYLTKPYGMLRLSPEALRENGYGCLCVCRPVESERLLKQMAIYGSHENNPWEGVAHVVEDAAMLTHELERTTSAAVREDLIAGRDVDSMVGVSVSGYAVKHRLGGKMAGEEKW 715
BLAST of mRNA_C-linearis_contig1.112.1 vs. uniprot
Match: A0A8J2WKN9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WKN9_9STRA) HSP 1 Score: 199 bits (506), Expect = 3.970e-53 Identity = 99/230 (43.04%), Postives = 145/230 (63.04%), Query Frame = 3
Query: 948 RPKVLIVGSGTFNPIHKIHIRRFYLARNFLQVQKGMRVVGGILSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGEGSWLAVDPWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKASLLKELSPSFRNIAILVEDSTILSAEMERTSSNMVRHLLKQGK--PVEGMVGKAVARYIRDNTIAERVSGRQKWT 1631
RPKV++VG G +NPIHK+H+R F +AR FL+ + V+GG+L P H T VRQR R R EII P+HRL+M RAAVG WL VD WE+TR+R++DY+S L+H +++ + FP + + + Q+ LN L+ G IT+CRP E LL+++ +RN+A +VED+ +LS E+E S+ +RH L G + V A YI+ + +A+++SG Q WT
Sbjct: 197 RPKVVLVGRGKYNPIHKMHLRHFVIARQFLEERTRFSVLGGLLVPKHATDVRQRCRTRPQEIITPRHRLAMVRAAVGGSPWLTVDSWEITRRRVLDYLSTLDHIRQLFEQRFPDLMAPVRFVLLVAPDQLLQLNLGELKDAGHECITICRPQEHKRLLRQMGNRWRNVAHVVEDNALLSVELESCCSSKIRHALMSGDFDAIATNVPGATLDYIKCHRLAQKMSGIQDWT 426
BLAST of mRNA_C-linearis_contig1.112.1 vs. uniprot
Match: A0A067CKC3_SAPPC (CTP_transf_like domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CKC3_SAPPC) HSP 1 Score: 199 bits (506), Expect = 1.930e-52 Identity = 101/247 (40.89%), Postives = 150/247 (60.73%), Query Frame = 3
Query: 903 VARVKQGLQNGDDEKRPKVLIVGSGTFNPIHKIHIRRFYLARNFLQVQKGMRVVGGILSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGEGSWLAVDPWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKASLLKELSPSFRNIAILVEDSTILSAEMERTSSNMVRHLLKQGKPVEGMVGKAVARYIRDNTIAERVSGRQKWTVEVR 1643
+A++ Q L G + + V++V SG +NP+H +H+R FY+AR ++ VVG I+SP H T VR ++R + E+IP HRL M AA SW+ VD WE+TR+R++DY+S L H +E+C FP + +LY+C + I L+ LR GFG I VCRP + A L+K L + AI+VED +L+ E+ER +S VR L Q + MVGK V+ Y+ + I ++++GR+ WT E R
Sbjct: 251 LAKIAQALA-GIAKDQEVVVLVSSGAYNPVHMLHLRAFYVARQHIESNYKFPVVGAIISPCHDTYVRTKNRRKPREMIPKSHRLGMLEAATATSSWIEVDKWEITRRRVLDYLSTLTHVREICEAQFPEYK--FRVLYVCGVNTIVKLSHTALRDEGFGCIAVCRPNQTAMLMKHLGAKWTKTAIVVEDMGVLTCELERATSFRVRKSLIQNEACASMVGKHVSDYLVQHRIGDKIAGREPWTAEDR 494
BLAST of mRNA_C-linearis_contig1.112.1 vs. uniprot
Match: A0A6G0XKE5_9STRA (CTP_transf_like domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKE5_9STRA) HSP 1 Score: 199 bits (506), Expect = 2.140e-52 Identity = 98/229 (42.79%), Postives = 142/229 (62.01%), Query Frame = 3
Query: 957 VLIVGSGTFNPIHKIHIRRFYLARNFLQVQKGMRVVGGILSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGEGSWLAVDPWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKASLLKELSPSFRNIAILVEDSTILSAEMERTSSNMVRHLLKQGKPVEGMVGKAVARYIRDNTIAERVSGRQKWTVEVR 1643
V++V SG +NP+H +HIR FY+AR ++ VVGGI+SP H T VR ++R + E+IP HRL+M AA SW+ VD WE+TR+R++DY+S L H +E+C FP +LY+C + + L+ LR GFG I VCRP + L K L + AI+VED +LS E+ER +S VR L +G+ MVGK V Y++ + + E+++GR++WT E R
Sbjct: 269 VVLVASGAYNPVHMLHIRAFYVARQHIEANYKFAVVGGIISPCHDTYVRTKNRRKPREMIPNAHRLAMLEAATASSSWIEVDKWEITRRRVLDYLSTLTHVREICEAQFPQFK--FRVLYVCGVNTVVKLSHTALRDEGFGCIAVCRPNQTEMLYKHLGAKWTKTAIVVEDVGVLSCELERATSFRVRQALIEGENCAQMVGKQVFDYMQRHHVGEKIAGRERWTSEDR 495
BLAST of mRNA_C-linearis_contig1.112.1 vs. uniprot
Match: A0A1V9YQ77_9STRA (CTP_transf_like domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQ77_9STRA) HSP 1 Score: 192 bits (489), Expect = 1.710e-51 Identity = 105/271 (38.75%), Postives = 156/271 (57.56%), Query Frame = 3
Query: 885 VFSSTVVA----RVKQGLQNGDDEKRPKVLIVGSGTFNPIHKIHIRRFYLARNFLQVQKGMRVVGGILSPSHPT--------------LVRQRHRVRAAEIIPPKHRLSMARAAVGEGSWLAVDPWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKASLLKELSPSFRNIAILVEDSTILSAEMERTSSNMVRHLLKQGKPVEGMVGKAVARYIRDNTIAERVSGRQKWTVEVR 1643
VF+++ V+ ++ QGL N ++ V++V SG +NP+H +HIR FY+AR ++ VVG I+SP H T +VR ++R + E+IP HRL M AA SW+ VD WE+TR+R++DY+S L H +E+C FP + +LY+C + I L+ LR GFG I VCRP + L+K L + AI+ ED +L+ E+ER +S VR L Q +P MVGK V+ Y+ N I ++++GR+ WT E R
Sbjct: 83 VFNASEVSYPLTKIAQGLANIARDQEV-VVLVSSGAYNPVHMLHIRAFYVARQHIESNYKFPVVGAIISPCHDTYGVSAARISPVIDLVVRTKNRRKPREMIPKSHRLGMLEAATMSSSWIEVDKWEITRRRVLDYLSTLTHVREICEAQFPAYK--FRVLYVCGVNTIVKLSHTALRDEGFGCIAVCRPNQTEMLMKHLGAKWSKTAIVAEDMGVLTCELERATSFRVRKSLIQNEPCAAMVGKHVSDYMIANRIGDKIAGREPWTAEDR 350
BLAST of mRNA_C-linearis_contig1.112.1 vs. uniprot
Match: A0A024TUB6_9STRA (CTP_transf_like domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TUB6_9STRA) HSP 1 Score: 192 bits (489), Expect = 5.090e-50 Identity = 96/226 (42.48%), Postives = 140/226 (61.95%), Query Frame = 3
Query: 957 VLIVGSGTFNPIHKIHIRRFYLARNFLQVQKGMRVVGGILSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGEGSWLAVDPWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKASLLKELSPSFRNIAILVEDSTILSAEMERTSSNMVRHLLKQGK-PVEGMVGKAVARYIRDNTIAERVSGRQKWT 1631
V++V SG +NP+H +HIR FY+AR ++ VVGGI+SP H T VR ++R + E+IP HRL+M AA +W+ VD WE+TR+R++DY+S L H +E+C FP +LY+C + I L+ L+ GFGV+ +CRP + L K L + AI+VED+ +L+ E+ER +S VR L QG V MVGK V Y+ + I ++V+GR+ WT
Sbjct: 265 VVLVSSGAYNPVHMLHIRAFYVARQHIESNYSFPVVGGIISPCHDTYVRTKNRRKPREMIPKAHRLAMLEAATASSTWIEVDKWEITRRRVLDYLSTLTHVREICEHQFPHFK--FRVLYVCGVNTIVKLSHTALKEEGFGVMAICRPNQTDMLHKHLGAKWSKTAIVVEDTGVLACELERATSFRVRQALIQGNVDVAPMVGKNVDEYMHRHRIGDKVAGREPWT 488
BLAST of mRNA_C-linearis_contig1.112.1 vs. uniprot
Match: A0A6A4CGZ6_9STRA (CTP_transf_like domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4CGZ6_9STRA) HSP 1 Score: 189 bits (481), Expect = 8.560e-50 Identity = 102/299 (34.11%), Postives = 163/299 (54.52%), Query Frame = 3
Query: 753 LDITPKVAESHQHRSFVVRTLPSGNKLRTVRAGRCRSLVSPNNKVFSSTVVARVKQGLQNGDDEKRPKVLIVGSGTFNPIHKIHIRRFYLARNFLQVQKGMRVVGGILSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGEGSWLAVDPWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKASLLKELSPSFRNIAILVEDSTILSAEMERTSSNMVRHLLKQ----GKPVEGMVGKAVARYIRDNTIAERVSGRQKWTVE 1637
L I K +HRS V LPS + + +++ + + + S A + +K +++V SG +NPIH +HIR FY+AR +++ VVG +SPSH T VR ++R E+I +HRL++ AV SW+ VD WE+TR+R++DY+S L H +E+C FP + + ++Y+C + + L+ + LR GFG ITVCRP + ++K L + +VED+ +L ++ER +S VR L +E MVGK V +Y + I E+++G+ WT E
Sbjct: 114 LSILVKDGSPSKHRSLVRPALPSHHPVWSIQYPLLKIAQNLEHLQGLSADSAGPANSPASSPSKKTDVIVLVSSGAYNPIHMLHIRAFYVARQYVESNYKFPVVGAFISPSHDTYVRVKNRRNPREMITKRHRLALIETAVASSSWIEVDKWEITRRRVLDYLSTLTHVREMCESHFPRYR--VHVMYVCGCNTVVKLSHSALRDEGFGCITVCRPTQTDMVIKHLGKTLSKTTTIVEDTGVLPCDLERATSFRVRQALSNVGANANKIEMMVGKPVFQYFMKHEIGEKIAGKVSWTEE 410 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig1.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig1.112.1 >prot_C-linearis_contig1.112.1 ID=prot_C-linearis_contig1.112.1|Name=mRNA_C-linearis_contig1.112.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=600bp MNTTTLSQLATTELPHFNPVEPSPDRLWQRVRHIESNLGYSNLAFEGCRPback to top mRNA from alignment at C-linearis_contig1:1586150..1591173- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig1.112.1 ID=mRNA_C-linearis_contig1.112.1|Name=mRNA_C-linearis_contig1.112.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5024bp|location=Sequence derived from alignment at C-linearis_contig1:1586150..1591173- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig1:1586150..1591173- >mRNA_C-linearis_contig1.112.1 ID=mRNA_C-linearis_contig1.112.1|Name=mRNA_C-linearis_contig1.112.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3600bp|location=Sequence derived from alignment at C-linearis_contig1:1586150..1591173- (Chordaria linearis ClinC8C monoicous)back to top |