mRNA_C-linearis_contig1.101.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig1.101.1
Unique NamemRNA_C-linearis_contig1.101.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig1.101.1 vs. uniprot
Match: D7G448_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G448_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 3.550e-30
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 GKCFPPAPLENKGVMFVVYRRLNAGRSLLLATLYDGEDTLVGVGLFFCLKCGGRYIP 171
            GK FPPAPL+NKGVMFVVYRRLNAGRSLLLATLYDGEDT VGVGL FC K GGRYIP
Sbjct:   15 GKSFPPAPLKNKGVMFVVYRRLNAGRSLLLATLYDGEDTSVGVGLVFCSKYGGRYIP 71
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig1.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G448_ECTSI3.550e-3089.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig1contigC-linearis_contig1:1471258..1471431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927276.3036-CDS-C-linearis_contig1:1471257..14714311622927276.3036-CDS-C-linearis_contig1:1471257..1471431Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1471258..1471431 +
1690879599.286699-CDS-C-linearis_contig1:1471257..14714311690879599.286699-CDS-C-linearis_contig1:1471257..1471431Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1471258..1471431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig1.101.1prot_C-linearis_contig1.101.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig1 1471258..1471431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig1.101.1

>prot_C-linearis_contig1.101.1 ID=prot_C-linearis_contig1.101.1|Name=mRNA_C-linearis_contig1.101.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=58bp
GKCFPPAPLENKGVMFVVYRRLNAGRSLLLATLYDGEDTLVGVGLFFCLK
CGGRYIP*
back to top

mRNA from alignment at C-linearis_contig1:1471258..1471431+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig1.101.1 ID=mRNA_C-linearis_contig1.101.1|Name=mRNA_C-linearis_contig1.101.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at C-linearis_contig1:1471258..1471431+ (Chordaria linearis ClinC8C monoicous)
GGGAAATGTTTCCCCCCGGCTCCCCTCGAGAACAAGGGCGTGATGTTCGT
GGTGTATCGGCGCCTAAACGCCGGTCGCTCTTTGTTGTTGGCCACTTTGT
ACGACGGGGAGGATACTTTGGTGGGGGTGGGCTTGTTTTTTTGTTTGAAG
TGCGGAGGAAGATACATCCCTTGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig1:1471258..1471431+

>mRNA_C-linearis_contig1.101.1 ID=mRNA_C-linearis_contig1.101.1|Name=mRNA_C-linearis_contig1.101.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at C-linearis_contig1:1471258..1471431+ (Chordaria linearis ClinC8C monoicous)
GGGAAATGTTTCCCCCCGGCTCCCCTCGAGAACAAGGGCGTGATGTTCGT
GGTGTATCGGCGCCTAAACGCCGGTCGCTCTTTGTTGTTGGCCACTTTGT
ACGACGGGGAGGATACTTTGGTGGGGGTGGGCTTGTTTTTTTGTTTGAAG
TGCGGAGGAAGATACATCCCTTGAGGGAAATGTTTCCCCCCGGCTCCCCT
CGAGAACAAGGGCGTGATGTTCGTGGTGTATCGGCGCCTAAACGCCGGTC
GCTCTTTGTTGTTGGCCACTTTGTACGACGGGGAGGATACTTTGGTGGGG
GTGGGCTTGTTTTTTTGTTTGAAGTGCGGAGGAAGATACATCCCTTGA
back to top