prot_A-nodosum_M_contig10361.4.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig10361.4.2
Unique Nameprot_A-nodosum_M_contig10361.4.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length220
Homology
BLAST of mRNA_A-nodosum_M_contig10361.4.2 vs. uniprot
Match: D7G8W1_ECTSI (tRNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W1_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.620e-76
Identity = 120/145 (82.76%), Postives = 134/145 (92.41%), Query Frame = 0
Query:   75 VMAISQAAVEEIENADEVPTLKDPVAISDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIALNVEEETILGRPSRGRLLSASNFSKKPMPRTLRTVLLGGGGVPPGSVISGL 219
            +MA+S AA EEI N ++VP LKDPVAI+DFEALD+RVG IV+AELIPDP+H NKPSRKYLSLVVDLGNEKRRVVSAVR+IVDVEDAIGK+VL+A NVEEETILG PSRG+LLS SNFSK+PMPRTLRTVLLGGGGVPPGS +SGL
Sbjct:    2 MMAVSHAAAEEISNMEDVPKLKDPVAIADFEALDIRVGRIVLAELIPDPDHGNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSGSNFSKEPMPRTLRTVLLGGGGVPPGSAVSGL 146          
BLAST of mRNA_A-nodosum_M_contig10361.4.2 vs. uniprot
Match: A0A836CNH0_9STRA (tRNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH0_9STRA)

HSP 1 Score: 192 bits (487), Expect = 5.160e-59
Identity = 100/161 (62.11%), Postives = 123/161 (76.40%), Query Frame = 0
Query:   59 SHGSRGLHFRDRGGAPVMAISQAAVEEIENADEVPTLKDPVAISDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIALNVEEETILGRPSRGRLLSASNFSKKPMPRTLRTVLLGGGGVPPGSVISGL 219
            SH  R LH R+      +A+S A  EE  ++ +VP L+  V+++ +EALD+RVG IV AE +PDP+H NKPSRKYLSLVV LGNE R ++S VR + DVE+AIGKSVL+  N EEE ILGRPSRGRLL A+N+SK PMPRTLRTVLLGGG VPPGS ++GL
Sbjct:    5 SHAVRPLHHRE------VAVSTALGEEATDSADVPALQPDVSVASYEALDIRVGRIVKAETVPDPDHGNKPSRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQVTGL 159          
BLAST of mRNA_A-nodosum_M_contig10361.4.2 vs. uniprot
Match: A0A7S0MGA1_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MGA1_9CRYP)

HSP 1 Score: 162 bits (409), Expect = 1.410e-46
Identity = 83/144 (57.64%), Postives = 114/144 (79.17%), Query Frame = 0
Query:   76 MAISQAAVEEIENAD--EVPTLKDPVAISDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIALNVEEETILGRPSRGRLLSASNFSKKPMPRTLRTVLLGGGGVPPGSVIS 217
            MA  + AV+E +N D  ++P +KD V+ +  ++LD+RVG I  A+LIPDPEH+ KPSRKYL L+V++G EKR +V+A R I DVE++IG+SVL+A NVE++T+LG  S GRLLSASN +++P+PRTLRTVL  GGG+PPGS +S
Sbjct:   61 MAFVKGAVDEEDNLDPSDIPPVKDEVSNALLDSLDIRVGRIERADLIPDPEHEMKPSRKYLRLIVNIGTEKRTIVAASRGIYDVEESIGRSVLVACNVEQQTVLGVASHGRLLSASNPTRRPIPRTLRTVLSKGGGLPPGSPVS 204          
BLAST of mRNA_A-nodosum_M_contig10361.4.2 vs. uniprot
Match: A0A2K1L6P8_PHYPA (tRNA-binding domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L6P8_PHYPA)

HSP 1 Score: 102 bits (254), Expect = 3.220e-23
Identity = 68/169 (40.24%), Postives = 91/169 (53.85%), Query Frame = 0
Query:   55 GLHGSHGSRGLHFRDRGGAPVMAISQAAVEEIENADEVPTLKDPVAISDFEALDVRVGCIVVAELIPDPEHD---NKP--SRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIALNVEEETILGRPSRGRLLSASNFSKKPMPRTLRTVLLGGGGVPPGSVISG 218
            GL     S GLH R            A V E  +    P +K  V  S FE++DVRVG I  A+ + D E      KP  SRK+L L VD+G E+R +VS  + ++DVEDA+GK VLI  NV    + G  S G +L+  N+   PMPR+ + +L G G +PPGS + G
Sbjct:   58 GLQRRVNSPGLHIRAH-------TETAEVPETTDRVACPAVKPEVDPSIFESVDVRVGLITDAKPVQDAEMTAKRGKPTLSRKFLQLTVDIGCEQRTIVSECKYVMDVEDAVGKKVLIVANVPPTEVNGIKSHGVVLTGFNYDPTPMPRSFKVILPGLGRLPPGSQVKG 219          
BLAST of mRNA_A-nodosum_M_contig10361.4.2 vs. uniprot
Match: A9TWI9_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TWI9_PHYPA)

HSP 1 Score: 99.4 bits (246), Expect = 4.520e-22
Identity = 65/158 (41.14%), Postives = 87/158 (55.06%), Query Frame = 0
Query:   62 SRGLHFRDRGGAPVMAISQAAVEEIENADEVPTLKDPVAISDFEALDVRVGCIVVAELIPDPEHD---NKP--SRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIALNVEEETILGRPSRGRLLSASNFSKKPMPRTLRTVLLGGGGVPPGS 214
            S GLH R            A V E  +    P +K  V  S FE++DVRVG I  A+ + D E      KP  SRK+L L VD+G E+R +VS  + ++DVEDA+GK VLI  NV    + G  S G +L+  N+   PMPR+ + +L G G +PPGS
Sbjct:   37 SPGLHIRAH-------TETAEVPETTDRVACPAVKPEVDPSIFESVDVRVGLITDAKPVQDAEMTAKRGKPTLSRKFLQLTVDIGCEQRTIVSECKYVMDVEDAVGKKVLIVANVPPTEVNGIKSHGVVLTGFNYDPTPMPRSFKVILPGLGRLPPGS 187          
BLAST of mRNA_A-nodosum_M_contig10361.4.2 vs. uniprot
Match: A0A1G8X7N8_9EURY (Methionine--tRNA ligase n=1 Tax=Methanoculleus thermophilus TaxID=2200 RepID=A0A1G8X7N8_9EURY)

HSP 1 Score: 72.8 bits (177), Expect = 2.740e-11
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 0
Query:   75 VMAISQAAVEEIENADEVPTLKDP-VAISDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIALNVEEETILGRPSRGRLLSASN 190
            + A+     E +E A E    K P V+I +F  LD+RVG IV AE I       K S+K   L+VDLG+EKR+VVS +      E+ +GK V +  N+    I G  SRG +L+A +
Sbjct:  537 IAALEAILNERVEKAKEAAKPKTPTVSIDEFAKLDIRVGQIVSAEPI-------KGSKKLYKLIVDLGSEKRQVVSGIAQFYSPEELVGKDVAMIANLAPAKIFGVESRGMILAAGD 646          
BLAST of mRNA_A-nodosum_M_contig10361.4.2 vs. uniprot
Match: UPI001AE5ECDA (methionine--tRNA ligase n=1 Tax=Methanolinea mesophila TaxID=547055 RepID=UPI001AE5ECDA)

HSP 1 Score: 71.2 bits (173), Expect = 9.220e-11
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 0
Query:   84 EEIENADEVPTLK-DPVAISDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIALNVEEETILGRPSRGRLLSASNFSKKPMPRTL 200
            + ++ A   P  K + ++I DF  +D+R+G I+ AE IP        S+K L L+VDLG EKR++VS +      ED +G+ V +  N+   TI G  SRG +L+A + +   +P T+
Sbjct:  545 KRVKEAGAPPAPKMEEISIEDFCRMDIRIGKILKAEPIPK-------SKKLLRLIVDLGQEKRQIVSGIAQFYTPEDLVGQQVAVLANLAPATIFGVESRGMILAAGDTASLLVPLTV 655          
BLAST of mRNA_A-nodosum_M_contig10361.4.2 vs. uniprot
Match: A0A1F8JXF2_9BACT (Methionine--tRNA ligase n=1 Tax=Chlamydiae bacterium RIFCSPLOWO2_01_FULL_28_7 TaxID=1797606 RepID=A0A1F8JXF2_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 1.250e-10
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 0
Query:   87 ENADEVPTLKDPVAISDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIALNVEEETILGRPSRGRLLSASN 190
            EN      LK+ +   DF  LD+RVG I+ AE +       + S K L + VD+G EKR++VS++      ED IGK V+I  N++   ++G  S+G +L+A N
Sbjct:  558 ENLKSFEKLKEEITYEDFSKLDLRVGKIISAEKV-------EKSNKLLKITVDIGFEKRQIVSSIAKTFKPEDLIGKKVIIVANLKTAKLMGIDSQGMILAAGN 654          
BLAST of mRNA_A-nodosum_M_contig10361.4.2 vs. uniprot
Match: A0A2H0VUE8_9BACT (Methionine--tRNA ligase n=1 Tax=Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_42_34 TaxID=1973936 RepID=A0A2H0VUE8_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 2.300e-10
Identity = 44/128 (34.38%), Postives = 68/128 (53.12%), Query Frame = 0
Query:   67 FRDRGGAPVMAISQAAVEEIENADEVPT-----LKDPVAISDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIALNVEEETILGRPSRGRLLSAS 189
            FR      ++   Q   E+++   EV T     LKDP+    FE +D+RV  ++ A  +P        S+K L L+VD+G EKR +VS +    + E  +GK V+I  N+   TI+G  S+G +L+AS
Sbjct:  539 FRKVEDEEILLQVQKLGEKLKEVKEVTTTTYQPLKDPITFETFEKIDLRVAQVLEAVKVPK-------SKKLLKLLVDVGFEKRTIVSGIALSYEPEQLVGKKVVIVANLAPATIMGIESQGMILAAS 659          
BLAST of mRNA_A-nodosum_M_contig10361.4.2 vs. uniprot
Match: L0AB28_CALLD (Protein containing C-terminal region/beta chain of methionyl-tRNA synthetase n=2 Tax=Caldisphaera lagunensis TaxID=200415 RepID=L0AB28_CALLD)

HSP 1 Score: 65.5 bits (158), Expect = 2.800e-10
Identity = 35/103 (33.98%), Postives = 65/103 (63.11%), Query Frame = 0
Query:   95 LKDPVAISDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIALNVEEETILGRPSRGRLLSAS-NFSKKPM 196
            L++ +  S+F  +D+RVG ++ AEL+P+       SRK + L+VDLG E+R++++ ++     ED +GK V++  N++ + + G  S+G +L+A     KKP+
Sbjct:    4 LEEKIDYSEFSKIDLRVGKVISAELVPN-------SRKLIKLIVDLGTEQRQILAGLQKWYKPEDFVGKFVVVVANLKSKIMGGLESQGMILAAPCGDDKKPV 99          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10361.4.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W1_ECTSI1.620e-7682.76tRNA-binding domain-containing protein n=2 Tax=Ect... [more]
A0A836CNH0_9STRA5.160e-5962.11tRNA-binding domain-containing protein n=1 Tax=Tri... [more]
A0A7S0MGA1_9CRYP1.410e-4657.64Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A2K1L6P8_PHYPA3.220e-2340.24tRNA-binding domain-containing protein n=1 Tax=Phy... [more]
A9TWI9_PHYPA4.520e-2241.14Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A1G8X7N8_9EURY2.740e-1139.32Methionine--tRNA ligase n=1 Tax=Methanoculleus the... [more]
UPI001AE5ECDA9.220e-1135.59methionine--tRNA ligase n=1 Tax=Methanolinea mesop... [more]
A0A1F8JXF2_9BACT1.250e-1037.50Methionine--tRNA ligase n=1 Tax=Chlamydiae bacteri... [more]
A0A2H0VUE8_9BACT2.300e-1034.38Methionine--tRNA ligase n=1 Tax=Chlamydiae bacteri... [more]
L0AB28_CALLD2.800e-1033.98Protein containing C-terminal region/beta chain of... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002547tRNA-binding domainPFAMPF01588tRNA_bindcoord: 110..193
e-value: 3.5E-6
score: 27.1
IPR002547tRNA-binding domainPROSITEPS50886TRBDcoord: 103..217
score: 15.843813
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 96..216
e-value: 1.3E-18
score: 69.0
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 99..214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10361contigA-nodosum_M_contig10361:3662..13246 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10361.4.2mRNA_A-nodosum_M_contig10361.4.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig10361 3662..13389 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig10361.4.2 ID=prot_A-nodosum_M_contig10361.4.2|Name=mRNA_A-nodosum_M_contig10361.4.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=220bp
MKKISSGISGVLSCTALFIGTALVTTPTTCHAFAAHHFPRRPFEAPVAAA
RQRPGLHGSHGSRGLHFRDRGGAPVMAISQAAVEEIENADEVPTLKDPVA
ISDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSA
VRAIVDVEDAIGKSVLIALNVEEETILGRPSRGRLLSASNFSKKPMPRTL
RTVLLGGGGVPPGSVISGL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002547tRNA-bd_dom
IPR012340NA-bd_OB-fold