prot_A-nodosum_M_contig10320.2.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig10320.2.1
Unique Nameprot_A-nodosum_M_contig10320.2.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length71
Homology
BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Match: D7FNY1_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY1_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.890e-16
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0
Query:    1 MSAIGAAKRCENCGAYSPSIRKDGSDKLFQMPLANKFGTMNQSSKTDIVSAVQGRDLSRTDGD 63
            + A+GA KRCENCGA+SP+IRKDGS+KLFQ+PL++K    NQS  T IVSAVQ RD  + + D
Sbjct:  207 IKAMGACKRCENCGAFSPNIRKDGSNKLFQVPLSDKNRMANQSCNTQIVSAVQRRDPGKPNED 269          
BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.900e-16
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0
Query:    1 MSAIGAAKRCENCGAYSPSIRKDGSDKLFQMPLANKFGTMNQSSKTDIVSAVQGRDLSRTDGD 63
            + AIGA KRCENCGA+SP+IRKDGS+KLFQ+PL++K    NQ+  T IVSAVQ RD  + + D
Sbjct:  207 IKAIGACKRCENCGAFSPNIRKDGSNKLFQVPLSDKNRMANQTCNTQIVSAVQRRDPGKPNED 269          
BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.840e-8
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0
Query:    1 MSAIGAAKRCENCGAYSPSIRKDGSDKLFQMPLANKFGTMNQSSKTDIVSAVQ 53
            + AIGA K+C+NCGA+SP +RKDG  KLF  PL++K    N      + SA+Q
Sbjct:  180 IKAIGACKKCQNCGAFSPVLRKDGHTKLFLKPLSDKMQKANNLVAAKMGSAMQ 232          
BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Match: A0A7S2Y515_9STRA (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y515_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 5.370e-7
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0
Query:    1 MSAIGAAKRCENCGAYSPSIRKDGSDKLFQMPLANKFGTMNQSSKTDIVSAVQGRDLSRTDGD 63
            ++A  A K+C +CGA+SP IR+D S+K F+  L  K+  MN +    + SA+ G D    DG+
Sbjct:   38 LAACRAVKKCAHCGAHSPKIREDSSNKFFRGALPEKYKRMNANEGIQLRSALAGDDEENADGE 100          
BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Match: A0A482T921_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T921_9ARCH)

HSP 1 Score: 50.1 bits (118), Expect = 1.160e-5
Identity = 24/52 (46.15%), Postives = 31/52 (59.62%), Query Frame = 0
Query:    1 MSAIGAAKRCENCGAYSPSIRKDGSDKLFQMPLA---NKFGTMNQSSKTDIV 49
            M A  A K+CENC A+SP IRKDG+ K+FQ P+     K  + N   K D+ 
Sbjct:  124 MKANLAVKKCENCSAFSPPIRKDGASKIFQRPIPVRQRKSMSSNLKQKVDLT 175          
BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Match: A0A087SNI7_AUXPR (DNA-directed RNA polymerase subunit n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SNI7_AUXPR)

HSP 1 Score: 50.8 bits (120), Expect = 1.350e-5
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 0
Query:    9 RCENCGAYSPSIRKDGSDKLFQMPLANKFGTMNQSSKTDIVSAV 52
            RC NCGA+SPSI+K+G  KLF +PL  K    N+   T+I+ ++
Sbjct:  208 RCANCGAHSPSIKKEGYSKLFLLPLTTKKAAANKMQGTEILPSL 251          
BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Match: A0A433PW95_9FUNG (DNA-directed RNA polymerase n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PW95_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 2.500e-5
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0
Query:    6 AAKRCENCGAYSPSIRKDGSDKLFQMPLANK 36
            A K+CENCGAY+ +IRKDG  KLFQ+PL  K
Sbjct:  175 AKKKCENCGAYARTIRKDGFTKLFQLPLPKK 205          
BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Match: A0A448YYP3_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYP3_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.540e-5
Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 0
Query:    6 AAKRCENCGAYSPSIRKDGSDKLFQMPL--ANKFGTMNQSSKTDIVSAVQGRDLSRTDGDDSE 66
            AAK C +CGA+SP IR+D S+K+FQ PL  A K    ++  + +     Q  D    +G+DSE
Sbjct:  228 AAKSCPHCGAFSPKIRQDSSNKIFQSPLSLAGKRANASEGIRLESAMVKQKDDXXXMNGNDSE 290          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FNY1_ECTSI1.890e-1661.90DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A6H5KJ16_9PHAE1.900e-1661.90DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A836C8M0_9STRA4.840e-849.06DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A7S2Y515_9STRA5.370e-739.68DNA-directed RNA polymerase subunit (Fragment) n=1... [more]
A0A482T921_9ARCH1.160e-546.15Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A087SNI7_AUXPR1.350e-547.73DNA-directed RNA polymerase subunit n=3 Tax=Auxeno... [more]
A0A433PW95_9FUNG2.500e-567.74DNA-directed RNA polymerase n=1 Tax=Endogone sp. F... [more]
A0A448YYP3_9STRA2.540e-541.27DNA-directed RNA polymerase subunit n=1 Tax=Pseudo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10320contigA-nodosum_M_contig10320:12118..13935 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10320.2.1mRNA_A-nodosum_M_contig10320.2.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig10320 12099..13935 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig10320.2.1 ID=prot_A-nodosum_M_contig10320.2.1|Name=mRNA_A-nodosum_M_contig10320.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=71bp
MSAIGAAKRCENCGAYSPSIRKDGSDKLFQMPLANKFGTMNQSSKTDIVS
AVQGRDLSRTDGDDSEPMSEE
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