mRNA_A-nodosum_M_contig10320.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10320.2.1
Unique NamemRNA_A-nodosum_M_contig10320.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Match: D7FNY1_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY1_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 3.090e-18
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 2 
Query:    2 QTVEGLMSAIGAAKRCENCGAYSPSIRKDGSDKLFQMPLANKFGTMNQSSKTDIVSAVQGRDLSRTDGD 208
            Q  E L+ A+GA KRCENCGA+SP+IRKDGS+KLFQ+PL++K    NQS  T IVSAVQ RD  + + D
Sbjct:  201 QLAENLIKAMGACKRCENCGAFSPNIRKDGSNKLFQVPLSDKNRMANQSCNTQIVSAVQRRDPGKPNED 269
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BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.110e-18
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 2 
Query:    2 QTVEGLMSAIGAAKRCENCGAYSPSIRKDGSDKLFQMPLANKFGTMNQSSKTDIVSAVQGRDLSRTDGD 208
            Q  E L+ AIGA KRCENCGA+SP+IRKDGS+KLFQ+PL++K    NQ+  T IVSAVQ RD  + + D
Sbjct:  201 QLAENLIKAIGACKRCENCGAFSPNIRKDGSNKLFQVPLSDKNRMANQTCNTQIVSAVQRRDPGKPNED 269
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BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 6.930e-9
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 2 
Query:    2 QTVEGLMSAIGAAKRCENCGAYSPSIRKDGSDKLFQMPLANKFGTMNQSSKTDIVSAVQ 178
            Q  + ++ AIGA K+C+NCGA+SP +RKDG  KLF  PL++K    N      + SA+Q
Sbjct:  174 QIADDVIKAIGACKKCQNCGAFSPVLRKDGHTKLFLKPLSDKMQKANNLVAAKMGSAMQ 232
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BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Match: A0A7S2Y515_9STRA (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y515_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.910e-7
Identity = 26/69 (37.68%), Postives = 41/69 (59.42%), Query Frame = 2 
Query:    2 QTVEGLMSAIGAAKRCENCGAYSPSIRKDGSDKLFQMPLANKFGTMNQSSKTDIVSAVQGRDLSRTDGD 208
            + V+  ++A  A K+C +CGA+SP IR+D S+K F+  L  K+  MN +    + SA+ G D    DG+
Sbjct:   32 ELVKECLAACRAVKKCAHCGAHSPKIREDSSNKFFRGALPEKYKRMNANEGIQLRSALAGDDEENADGE 100
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BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Match: A0A482T921_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T921_9ARCH)

HSP 1 Score: 52.8 bits (125), Expect = 1.390e-6
Identity = 24/58 (41.38%), Postives = 34/58 (58.62%), Query Frame = 2 
Query:    2 QTVEGLMSAIGAAKRCENCGAYSPSIRKDGSDKLFQMPLA---NKFGTMNQSSKTDIV 166
            + ++  M A  A K+CENC A+SP IRKDG+ K+FQ P+     K  + N   K D+ 
Sbjct:  118 ELIDAFMKANLAVKKCENCSAFSPPIRKDGASKIFQRPIPVRQRKSMSSNLKQKVDLT 175
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BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Match: A0A448YYP3_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYP3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.930e-6
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 2 
Query:    2 QTVEGLMSAIGAAKRCENCGAYSPSIRKDGSDKLFQMPL--ANKFGTMNQSSKTDIVSAVQGRDLSRTDGDDSE 217
            Q V+ ++ A  AAK C +CGA+SP IR+D S+K+FQ PL  A K    ++  + +     Q  D    +G+DSE
Sbjct:  217 QLVKEVVVACKAAKSCPHCGAFSPKIRQDSSNKIFQSPLSLAGKRANASEGIRLESAMVKQKDDXXXMNGNDSE 290
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BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Match: A0A087SNI7_AUXPR (DNA-directed RNA polymerase subunit n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SNI7_AUXPR)

HSP 1 Score: 50.8 bits (120), Expect = 1.730e-5
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 2 
Query:   44 RCENCGAYSPSIRKDGSDKLFQMPLANKFGTMNQSSKTDIVSAV 175
            RC NCGA+SPSI+K+G  KLF +PL  K    N+   T+I+ ++
Sbjct:  208 RCANCGAHSPSIKKEGYSKLFLLPLTTKKAAANKMQGTEILPSL 251
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BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Match: A0A433PW95_9FUNG (DNA-directed RNA polymerase n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PW95_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 2.330e-5
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 2 
Query:   17 LMSAIGAAKRCENCGAYSPSIRKDGSDKLFQMPLANK 127
             +  + A K+CENCGAY+ +IRKDG  KLFQ+PL  K
Sbjct:  169 FLKRVLAKKKCENCGAYARTIRKDGFTKLFQLPLPKK 205
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10320.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FNY1_ECTSI3.090e-1860.87DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A6H5KJ16_9PHAE3.110e-1860.87DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A836C8M0_9STRA6.930e-945.76DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A7S2Y515_9STRA1.910e-737.68DNA-directed RNA polymerase subunit (Fragment) n=1... [more]
A0A482T921_9ARCH1.390e-641.38Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A448YYP3_9STRA1.930e-639.19DNA-directed RNA polymerase subunit n=1 Tax=Pseudo... [more]
A0A087SNI7_AUXPR1.730e-547.73DNA-directed RNA polymerase subunit n=3 Tax=Auxeno... [more]
A0A433PW95_9FUNG2.330e-556.76DNA-directed RNA polymerase n=1 Tax=Endogone sp. F... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10320contigA-nodosum_M_contig10320:12099..13935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FNY1
PFAMsRNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5
Model size232
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02999
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005736,GO:0005911,GO:0006139,GO:0006351,GO:0006360,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0030054,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0055029,GO:0055044,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons3
Evalue3.09e-17
EggNOG OGsCOG0086@1|root,KOG0262@2759|Eukaryota
EC2.7.7.6
Descriptionnegative regulation of protein localization to nucleolus
Cds size213
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866401.2336774-UTR-A-nodosum_M_contig10320:12098..121171680866401.2336774-UTR-A-nodosum_M_contig10320:12098..12117Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10320 12099..12117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866401.246079-CDS-A-nodosum_M_contig10320:12117..122071680866401.246079-CDS-A-nodosum_M_contig10320:12117..12207Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10320 12118..12207 +
1680866401.2586973-CDS-A-nodosum_M_contig10320:13434..135031680866401.2586973-CDS-A-nodosum_M_contig10320:13434..13503Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10320 13435..13503 +
1680866401.267352-CDS-A-nodosum_M_contig10320:13881..139351680866401.267352-CDS-A-nodosum_M_contig10320:13881..13935Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10320 13882..13935 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10320.2.1prot_A-nodosum_M_contig10320.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10320 12118..13935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10320.2.1

>prot_A-nodosum_M_contig10320.2.1 ID=prot_A-nodosum_M_contig10320.2.1|Name=mRNA_A-nodosum_M_contig10320.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=71bp
MSAIGAAKRCENCGAYSPSIRKDGSDKLFQMPLANKFGTMNQSSKTDIVS
AVQGRDLSRTDGDDSEPMSEE
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mRNA from alignment at A-nodosum_M_contig10320:12099..13935+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10320.2.1 ID=mRNA_A-nodosum_M_contig10320.2.1|Name=mRNA_A-nodosum_M_contig10320.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1837bp|location=Sequence derived from alignment at A-nodosum_M_contig10320:12099..13935+ (Ascophyllum nodosum dioecious)
TCAGACGGTTGAAGGGTTGATGTCGGCCATCGGAGCGGCCAAGCGGTGCG
AGAATTGTGGAGCGTATTCTCCCAGCATACGGAAGGACGGCTCCGACAAA
CTTTTCCAGGTCAATGTTCTCGCAAACAGTGGAAGAGACTCGAATCTCCC
TGTCCTTCCCCCCGCTCCCGCCTACTCACATCGTAAACCTCCCTTTTGGA
AATCTGGAAGATTTATTAGTCTCTTGGCGTTGACACCAAGGGGAGATACG
GGCCTAACTATTACTAATCCAAGTATTTAGTACCATAGTGGTTTTCACGC
CCCTTCTTTTCGCCTTCTTTTCGCCTTATCTTAATAACAATCCGTGTGGG
TAAAAACGTGAATACTGATAATTTTGATAATTTTAGGAGATAAAAAAAAA
GTGAGAACCCGACGTGATTTTGCCATGACGAGTCGTGCACGAATACTAAT
TTCCCGAGGGTTTCAGGATTGAAGATGAATGGCATGCTGCCTTCCTGCTG
AGCGAGATCTCGTATGTATTTAATAGTTAACTTGGAGTTGTTTTTAGTAT
CCATCCCAAAACACGCCTCTTATTTTTGTAACTTGATAGGGTTCTAAATC
TTTACTCAACTTAAGTGTGTCTTTTTCTTTCCCACCTCATGCAGAGTGGG
CCTCAGAACATGGTCTGGGTGGTGTGGCGCACGGAAACCTAGTTCAGGGA
GTTGCACTAATTCACGAAAGGATTATGAAGTTTATATCCCCAGTTTTCGC
GATGAAGAGTCATGAAATGGGTACCTTTTCCGGTACCCCGAGTTAGACCT
CGATGACGAAGTGTATCATGCTGCCTTCCTGCTGAGCAAAACGAAAAGAT
GGAGCTGTCGGAAAAACGAATGTTCATTATGGTATTCGTTTTAGTTTCTC
AATAATAGAGATCATTTTTATTTTAGTTTTTATTGACCCCGCGGCATTCG
AGAAAATCAAACTTTAAAAAATATTCTAGCCGAATCAGGTTCATTCGTTT
CAAACCTTTCATTCGTAGGTACCAGATACAGTATTCAAACGTACAGTATC
GCTATCGTCTACTCTAGGTATGGATTTGGAGAGACTCGAATCCATCATTC
CGGAACAGGCGTTGATGCGAACCCACCTCTGCACGTTGTAGTCATCGAAT
CTCTCTTCACGTGTACGTAGAAATATTTAATACGCTAGACCGGAGTGATT
CAGCGGTGATGTTCAAGTCTGCCCAAGTTCCGCCCAGTATAGAAACGTTT
TGATATTCCTCACGATACGTTTCGTGGAGTGTACCGAACGTTTTCCGTAC
ACATGCTCTGGCCCGTGCGTGTCTTTACCTCCTTAGATGCCGTTGGCAAA
CAAGTTCGGAACGATGAACCAGTCGTCGAAGACAGACATCGTGTCAGCAG
TTCAGGCGAGTCATCCTATCGGGGGAGTGGAATAGCTTTTCCACGTACGA
CTTTTTCAAGGCACTCACCGCTTTTTTCCACTTTGAACGAGGGGATTTCA
AAGACGGAACTCTAAAAAGGTTCGCGTCGTATTAAACGCCATAACTGTCT
GAAAATGAATTTACTAGAAACAACAAATAGGGGCTCGTTTGTCCGTCTCA
TTTTCTCGCTCCCCCCCGCCCCCTACTAATAGACAGGATGGCTAAAATAT
ACCGGGAAGAGCAAAGACTTGTTGATGGCGACTCGTTCATTCATTATTCG
TGCGGTTGTCTCTGTTTCAAGTTATTCTGTGATAATGGATGGAACTCCCT
TTCTCCTCTTTACGGTCATTATCTGTGCCGCAGGGGCGTGACCTCAGTAG
AACTGACGGTGACGACTCTGAACCGATGTCCGAAGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10320:12099..13935+

>mRNA_A-nodosum_M_contig10320.2.1 ID=mRNA_A-nodosum_M_contig10320.2.1|Name=mRNA_A-nodosum_M_contig10320.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=213bp|location=Sequence derived from alignment at A-nodosum_M_contig10320:12099..13935+ (Ascophyllum nodosum dioecious)
ATGTCGGCCATCGGAGCGGCCAAGCGGTGCGAGAATTGTGGAGCGTATTC
TCCCAGCATACGGAAGGACGGCTCCGACAAACTTTTCCAGATGCCGTTGG
CAAACAAGTTCGGAACGATGAACCAGTCGTCGAAGACAGACATCGTGTCA
GCAGTTCAGGGGCGTGACCTCAGTAGAACTGACGGTGACGACTCTGAACC
GATGTCCGAAGAG
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