mRNA_A-nodosum_M_contig1029.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1029.1.1
Unique NamemRNA_A-nodosum_M_contig1029.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: UPI001E1BCD31 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BCD31)

HSP 1 Score: 125 bits (315), Expect = 3.330e-33
Identity = 65/126 (51.59%), Postives = 88/126 (69.84%), Query Frame = 1
Query:   13 EKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390
            EKEEM+  PY+EAVGAL++ +T TRPDI+ AV  VA+F +NPG  H KAV +I +Y+  T+ +GI Y  Q  G  +  YTD+D+G  LD R S SG VL+ + G+ISW SR QE T+  T+E+E+V
Sbjct:   28 EKEEMKNIPYKEAVGALLYLSTTTRPDISYAVGQVAKFSQNPGIQHWKAVKRIIRYIAGTRTYGILYS-QEKGEMVTGYTDADYGGDLDDRTSTSGCVLLCSSGSISWFSRKQECTSLSTTESEFV 152          
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: A0A8H6Y342_9AGAR (Transcription factor n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6Y342_9AGAR)

HSP 1 Score: 122 bits (305), Expect = 2.380e-31
Identity = 60/122 (49.18%), Postives = 83/122 (68.03%), Query Frame = 1
Query:   25 MRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390
            M++ PYREAVG+LMW A  TRPDIA  V  ++++  NPGPTH +AV ++F+YL  TK+W + YG    GL  + Y+D+D G   + RR++SG   ++  GAISW S+ QEL    T+EAEYV
Sbjct:   72 MKRIPYREAVGSLMWAAVGTRPDIAFVVGVLSKYLNNPGPTHWEAVKRVFRYLQGTKDWRLTYGAGKAGL--EGYSDAD-GMSQENRRAISGYAFIIDGGAISWSSKKQELVTLSTTEAEYV 190          
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: UPI001C9BC1AB (secreted RxLR effector protein 161-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9BC1AB)

HSP 1 Score: 119 bits (297), Expect = 1.460e-30
Identity = 62/129 (48.06%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    4 NPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390
            N EEK  M++ PYREAVG LM+ A +TRPDI  AV  V+RF  NPG  H KAV +I +Y+  TK  GI+Y G    +   AY+D+DF   +DTRRS +G + ++A G + W S  Q+  +  T+EAEYV
Sbjct:   25 NDEEKVSMQEMPYREAVGCLMFAAILTRPDIMYAVSQVSRFLNNPGKEHWKAVKRILRYIQGTKYMGIKYSGSH--IDFTAYSDADFAGDVDTRRSTTGYITLMAGGPVIWSSHRQKCISRSTTEAEYV 151          
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: A0A5B7BVE6_DAVIN (Uncharacterized protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BVE6_DAVIN)

HSP 1 Score: 115 bits (289), Expect = 8.290e-30
Identity = 62/130 (47.69%), Postives = 84/130 (64.62%), Query Frame = 1
Query:    1 RNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390
            +N  E+++M+  PY  AVG+LM+  T TRPDI+ AV  + RF  NPG  H KA  K+ +YL  TK++ + Y  +   L +  Y+DSDF  CLD+R+S SG V +LA GAISW S  Q + AS T EAE+V
Sbjct:   41 KNDLERQQMKDIPYASAVGSLMYAQTCTRPDISFAVGMLGRFQSNPGMEHWKAAKKVMRYLQGTKDYMLTYR-RSDQLDVIGYSDSDFAGCLDSRKSTSGFVFLLASGAISWKSVKQSIIASSTMEAEFV 169          
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: A5B0M2_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B0M2_VITVI)

HSP 1 Score: 118 bits (295), Expect = 1.830e-29
Identity = 63/130 (48.46%), Postives = 85/130 (65.38%), Query Frame = 1
Query:    1 RNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390
            RN  E+E+M+K PY  AVG+LM+  T TRPDI+ AV  + R+  +PG  H KA  K+ +YL  TK++ + Y  +   L +  Y+D D+G CLD+ +S SG V MLA GAISW S  Q +TAS T EAE+V
Sbjct:  110 RNNXEREQMKKIPYASAVGSLMYAQTCTRPDISFAVXMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDXDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFV 238          
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: A0A438EZX7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EZX7_VITVI)

HSP 1 Score: 117 bits (292), Expect = 2.140e-29
Identity = 63/130 (48.46%), Postives = 85/130 (65.38%), Query Frame = 1
Query:    1 RNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390
            RN  E+E+M+K PY   VG+LM+  T TRPDI+ AV  + R+  +PG  H KA  K+ +YL  TK++ + Y  +   L +  Y+DSD+G CLD+ +S SG V MLA GAISW S  Q +TAS T EAE+V
Sbjct:   64 RNNMEREQMKKIPYASVVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVDYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFV 192          
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: A0A445FBE9_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FBE9_GLYSO)

HSP 1 Score: 120 bits (302), Expect = 3.380e-29
Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    1 RNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390
            +N  E+E M+  PY  AVG+LM+    TRPDIA AV  + R+  NPG  H KA  K+ +YL  TK++ + Y    C L +  Y+DSDF  C+D+RRS SG + MLA GA+SW S  Q LTA+ T EAE+V
Sbjct: 1332 KNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGRYQSNPGIDHWKAAKKVMRYLQGTKDYMLMYRQTDC-LEVIGYSDSDFAGCVDSRRSTSGYIFMLASGAVSWRSAKQTLTATSTMEAEFV 1460          
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: A0A445FAJ6_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445FAJ6_GLYSO)

HSP 1 Score: 120 bits (302), Expect = 3.430e-29
Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    1 RNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390
            +N  E+E M+  PY  AVG+LM+    TRPDIA AV  + R+  NPG  H KA  K+ +YL  TK++ + Y    C L +  Y+DSDF  C+D+RRS SG + MLA GA+SW S  Q LTA+ T EAE+V
Sbjct: 2106 KNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGRYQSNPGIDHWKAAKKVMRYLQGTKDYMLMYRQTDC-LEVIGYSDSDFAGCVDSRRSTSGYIFMLASGAVSWRSAKQTLTATSTMEAEFV 2234          
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: A0A151QLV5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QLV5_CAJCA)

HSP 1 Score: 118 bits (295), Expect = 5.940e-29
Identity = 64/130 (49.23%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    1 RNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390
            +N  E+E M+  PY  AVG+LM+    TRPDIA AV  + R+  NPG  H KA  K+ +YL  TK++ + Y      L +  Y+DSDF  C+DTR+S SG V MLA GA+SW SR Q LTA+ T EAE+V
Sbjct:  190 KNNLEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGRYQSNPGVDHWKAAKKVMRYLQGTKDFMLIYRRTD-SLEVIGYSDSDFAGCIDTRKSTSGYVFMLACGAVSWSSRKQTLTATSTMEAEFV 318          
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Match: A0A438JMN5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JMN5_VITVI)

HSP 1 Score: 119 bits (297), Expect = 7.370e-29
Identity = 64/130 (49.23%), Postives = 86/130 (66.15%), Query Frame = 1
Query:    1 RNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIFQYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQELTASGTSEAEYV 390
            RN  E+E+M+K PY  AVG+LM+  T TRPDI+ AV  + R+  +PG  H KA  K+ +YL  TK++ + Y  +   L +  Y+DSD+G CLD+ +S SG V MLA GAISW S  Q +TAS T EAE+V
Sbjct:  280 RNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFV 408          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1029.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E1BCD313.330e-3351.59secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A0A8H6Y342_9AGAR2.380e-3149.18Transcription factor n=1 Tax=Mycena sanguinolenta ... [more]
UPI001C9BC1AB1.460e-3048.06secreted RxLR effector protein 161-like n=1 Tax=Ve... [more]
A0A5B7BVE6_DAVIN8.290e-3047.69Uncharacterized protein (Fragment) n=1 Tax=Davidia... [more]
A5B0M2_VITVI1.830e-2948.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438EZX7_VITVI2.140e-2948.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A445FBE9_GLYSO3.380e-2948.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A445FAJ6_GLYSO3.430e-2948.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A151QLV5_CAJCA5.940e-2949.23Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JMN5_VITVI7.370e-2949.23Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1029contigA-nodosum_M_contig1029:154492..154881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra85763
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size390
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.47e-27
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size366
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866393.5032306-CDS-A-nodosum_M_contig1029:154491..1548571680866393.5032306-CDS-A-nodosum_M_contig1029:154491..154857Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1029 154492..154857 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866393.5159416-UTR-A-nodosum_M_contig1029:154857..1548811680866393.5159416-UTR-A-nodosum_M_contig1029:154857..154881Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1029 154858..154881 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1029.1.1prot_A-nodosum_M_contig1029.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1029 154492..154857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1029.1.1

>prot_A-nodosum_M_contig1029.1.1 ID=prot_A-nodosum_M_contig1029.1.1|Name=mRNA_A-nodosum_M_contig1029.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=122bp
MRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPTHKKAVMKIF
QYLLHTKEWGIRYGGQGCGLCMKAYTDSDFGACLDTRRSVSGAVLMLAKG
AISWHSRMQELTASGTSEAEYV
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mRNA from alignment at A-nodosum_M_contig1029:154492..154881-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1029.1.1 ID=mRNA_A-nodosum_M_contig1029.1.1|Name=mRNA_A-nodosum_M_contig1029.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=390bp|location=Sequence derived from alignment at A-nodosum_M_contig1029:154492..154881- (Ascophyllum nodosum dioecious)
CGGAACCCAGAGGAGAAGGAAGAAATGAGGAAGTTCCCGTACCGGGAGGC AGTGGGGGCGCTCATGTGGACGGCGACGATGACACGGCCGGATATTGCGT GCGCCGTACGCGCTGTGGCCAGGTTCTGCGAAAACCCTGGGCCGACGCAT AAGAAGGCAGTGATGAAGATCTTCCAGTATCTCCTTCACACGAAAGAATG GGGGATTAGGTACGGTGGACAGGGCTGTGGACTTTGCATGAAAGCATATA CGGACTCGGATTTCGGAGCCTGCCTGGACACAAGACGATCGGTTTCGGGT GCGGTGTTGATGCTGGCGAAGGGAGCGATCAGCTGGCACTCAAGGATGCA AGAATTGACAGCATCGGGTACCTCGGAGGCAGAGTACGTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1029:154492..154881-

>mRNA_A-nodosum_M_contig1029.1.1 ID=mRNA_A-nodosum_M_contig1029.1.1|Name=mRNA_A-nodosum_M_contig1029.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at A-nodosum_M_contig1029:154492..154881- (Ascophyllum nodosum dioecious)
ATGAGGAAGTTCCCGTACCGGGAGGCAGTGGGGGCGCTCATGTGGACGGC
GACGATGACACGGCCGGATATTGCGTGCGCCGTACGCGCTGTGGCCAGGT
TCTGCGAAAACCCTGGGCCGACGCATAAGAAGGCAGTGATGAAGATCTTC
CAGTATCTCCTTCACACGAAAGAATGGGGGATTAGGTACGGTGGACAGGG
CTGTGGACTTTGCATGAAAGCATATACGGACTCGGATTTCGGAGCCTGCC
TGGACACAAGACGATCGGTTTCGGGTGCGGTGTTGATGCTGGCGAAGGGA
GCGATCAGCTGGCACTCAAGGATGCAAGAATTGACAGCATCGGGTACCTC
GGAGGCAGAGTACGTT
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