mRNA_A-nodosum_M_contig10217.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10217.4.1
Unique NamemRNA_A-nodosum_M_contig10217.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10217.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10217contigA-nodosum_M_contig10217:2751..3491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size178
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866386.2268112-CDS-A-nodosum_M_contig10217:2750..28491680866386.2268112-CDS-A-nodosum_M_contig10217:2750..2849Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10217 2751..2849 -
1680866386.2390053-CDS-A-nodosum_M_contig10217:3413..34911680866386.2390053-CDS-A-nodosum_M_contig10217:3413..3491Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10217 3414..3491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10217.4.1prot_A-nodosum_M_contig10217.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10217 2751..3491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10217.4.1

>prot_A-nodosum_M_contig10217.4.1 ID=prot_A-nodosum_M_contig10217.4.1|Name=mRNA_A-nodosum_M_contig10217.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=59bp
PNRESYCIRQDTFGFLHGQDMDVEAQAAVKARKKQEPWPKAREGPVMSRK
VSCSGVAP*
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mRNA from alignment at A-nodosum_M_contig10217:2751..3491-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10217.4.1 ID=mRNA_A-nodosum_M_contig10217.4.1|Name=mRNA_A-nodosum_M_contig10217.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=741bp|location=Sequence derived from alignment at A-nodosum_M_contig10217:2751..3491- (Ascophyllum nodosum dioecious)
CCTAATCGTGAATCATATTGTATCCGACAGGATACATTTGGTTTCCTCCA
TGGCCAGGACATGGACGTCGAGGCCCAGGTGCACTTAACTTTCTTGTGGC
GTGTTCCATTACTATTACTAATACTACCGTGCTGTGCTGTGCTGTGCTGT
GCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCCTTCAGCA
ATCCCTACCGGACAGACCGCGATCAACTGAACTGAACTGAGAAAAGAGTG
AAAGTGAAAGTTTTTACTCCCAACCCCGCCGTGTGTCGTCCCGTCTCGAC
GACTGTCACTGTCGATTTCTAATTTTTCTTGGGGCTGTACTGTACTGTAC
TGTACTGTACTGTCCCTTTTGAATACCAGGGATGGCCTGGCCGGCCATAC
GTAGTCTATAGTCTATCGGTTTTGCTAAAAAGCCAGAACGAGGCCAGGGC
CCACAGGGGTATAGTCTAGGGGTATACCGTACTGGTGATATGAATATTGG
TGAAATGTTCAAAGGATTGTCGCATGATACCGTACTGTACTGTACTCAGG
GTGTCGTTTGAAATTGAAATGGTGGTGAATCAGGGTGTTACTATGTATCA
GGTAGCGACGGAGGTTTCGCGTTGTCTATTTGTTATTTTCAGGCGGCGGT
AAAGGCCCGGAAGAAGCAGGAACCGTGGCCGAAGGCAAGAGAAGGACCGG
TGATGAGCCGGAAGGTGAGCTGTTCTGGTGTGGCCCCGTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10217:2751..3491-

>mRNA_A-nodosum_M_contig10217.4.1 ID=mRNA_A-nodosum_M_contig10217.4.1|Name=mRNA_A-nodosum_M_contig10217.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=177bp|location=Sequence derived from alignment at A-nodosum_M_contig10217:2751..3491- (Ascophyllum nodosum dioecious)
CCTAATCGTGAATCATATTGTATCCGACAGGATACATTTGGTTTCCTCCA
TGGCCAGGACATGGACGTCGAGGCCCAGGCGGCGGTAAAGGCCCGGAAGA
AGCAGGAACCGTGGCCGAAGGCAAGAGAAGGACCGGTGATGAGCCGGAAG
GTGAGCTGTTCTGGTGTGGCCCCGTAG
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