mRNA_A-nodosum_M_contig10214.2.5 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10214.2.5
Unique NamemRNA_A-nodosum_M_contig10214.2.5
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10214.2.5 vs. uniprot
Match: D8LR61_ECTSI (PA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR61_ECTSI)

HSP 1 Score: 644 bits (1660), Expect = 1.200e-227
Identity = 320/443 (72.23%), Postives = 356/443 (80.36%), Query Frame = 1 
Query:    1 QSVASRLQISIPAVLHLENGYAHEEALFGIPKYGGSMAERLVHGGVTKG-SQKTWTLCSSDDVVAFKTIMPEDSPFILMVDRGDCTFVSKARLIVRRAQHLGAAGVIIADNTCLCSDVDSKICTKSPDTLCEQVEPIMADDGSGADIAIPSFLMKKRDAEMIKTTLASGQEVQAEMAWSLPAPDDRVEWSLWTSAVDASAALFKRDFKDVVKMLGRKAQFTPYYVIYDGKSYGCTATGAN-CKSLCTNHGRYCMTDPDFDTNEGVSGSDVVLESLRQKCIWNLYGGPSASKIDQGVGEKWWTYVNEFFSGCPLADKRFSDENCVASAMKIAGIDKGAVDKCMADSGGTSKDTVNRILEQELAEKDKKSIVIVPTVYVNNVAERGGISTAALLSTICAGYKPGTEPDVCRCAGQQTSALVDACMHNRNTINTGGRGTSLGNTLF 1323
            +S  SRLQ +IP+VL+ + GYAHEEALFGIPKYGG++AER+VHGGV  G S +TWTLCS DDV     + P DSPFILMVDRGDCTF SK    VR+AQH+GA GVIIADNTCLC D  S IC KS DT CEQVEPIMADDGSG DI IPSFLMKK DA +IK  L  GQ VQAEM WSLPAPDDRVEWSLWTSA+D SAA FKRDFK+VVK LG+ AQFTPYYV+Y+G SYGCT  GAN C SLCTN GRYCMTDPDFDT  GVSG+DVV ESLRQKC+WN YGG  A   DQGVGEKWW+YVNEFFS C ++  RF+DENCVA AMK A +DK  VD+CM+DSGG  K  VN ILE EL EK KKSIVIVPTV+VNN+AERGGI+TAA+L+TICAGYK GTEP++CRCAGQ +S  VDACM+NR TI  G  G S GNTLF
Sbjct:   27 ESSGSRLQFTIPSVLYRDEGYAHEEALFGIPKYGGTIAERIVHGGVDPGQSVRTWTLCSDDDVKDVPMV-PTDSPFILMVDRGDCTFASK----VRKAQHMGAIGVIIADNTCLCKDEASGICNKSGDTPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKSAQFTPYYVVYNGDSYGCTGGGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNTYGGEDAPLADQGVGEKWWSYVNEFFSSCSVSGNRFNDENCVARAMKAAEVDKTVVDRCMSDSGGLEKSGVNTILEAELVEKGKKSIVIVPTVFVNNMAERGGINTAAVLTTICAGYKSGTEPEICRCAGQLSSEQVDACMNNR-TIGGGSGGMSAGNTLF 463
[Close]
BLAST of mRNA_A-nodosum_M_contig10214.2.5 vs. uniprot
Match: A0A835YNB1_9STRA (PA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB1_9STRA)

HSP 1 Score: 469 bits (1207), Expect = 4.220e-159
Identity = 239/422 (56.64%), Postives = 297/422 (70.38%), Query Frame = 1 
Query:   10 ASRLQISIPAVLHLENGYAHEEALFGIPKYGGSMAERLVHGGVTKGSQKTWTLCSSDDVVAFKTIMPEDSPFILMVDRG--DCTFVSKARLIVRRAQHLGAAGVIIADNTCLCSDVDSKICTKSPDTLCEQVEPIMADDGSGADIAIPSFLMKKRDAEMIKTTLASGQEVQAEMAWSLPAPDDRVEWSLWTSAVDASAALFKRDFKDVVKMLGRKAQFTPYYVIYDGKSYGCTATGANCKSLCTNHGRYCMTDPDFDTNEGVSGSDVVLESLRQKCIWNLYGGPSASKIDQGVGEKWWTYVNEFFSGCPLADKRFSDENCVASAMKIAGIDKGAVDKCMADSGGTSKDTVNRILEQELAEKDKKSIVIVPTVYVNNVAERGGISTAALLSTICAGYKPGTEPDVCRCAGQQTSALVDACMHN 1269
            +SRLQI IP  L    GYAH+EALFGIP YGG++A+RLV+ G        +TLCS  +  A K + P   PFIL+VDRG  DCTFVSK    VRRAQHLGAAGVII D+ C+C D     C  +    C+ VEPIMADDGSGADI IPSFLM K D  +IK+ L + Q +QAEM WSLPAPDDRVEWSLWTSA D++A  FK +F+DVV  LG  A FTP+Y++YDG+ YGC     +C +LCTN GRYC  DPDFD + G+SG+D++ E+LRQKCIW  YGG  ASK +QG+GE+WWTYV  F   C +   +F D +C++ AM  A I++  ++KCM +SGG   D  N +L +EL EK  KSIV++PTVYVNNV ERGGI+ A++L+TIC+GY  GTEP VC CAGQ +S  V  C+ N
Sbjct:   24 SSRLQIQIPTELFRPAGYAHQEALFGIPHYGGAIAQRLVYPG---NYTDPYTLCSDSE--ADKFVNPAQ-PFILLVDRGGQDCTFVSK----VRRAQHLGAAGVIIVDDRCICGD---GACASA--VACQPVEPIMADDGSGADITIPSFLMTKMDGNIIKSHLQANQFIQAEMTWSLPAPDDRVEWSLWTSAQDSAATAFKAEFRDVVTALGTHAYFTPHYIVYDGEEYGCRDDTNHCGNLCTNAGRYCNPDPDFDRDSGLSGADIIQETLRQKCIWLHYGGDKASKGEQGIGERWWTYVQTFSKKCGMG--KFVDSSCISRAMSEAKINEKTINKCMDESGGLQGDIDNTLLSEELKEKANKSIVVIPTVYVNNVVERGGITAASVLTTICSGYAGGTEPKVCSCAGQGSSTAVKLCVRN 428
[Close]
BLAST of mRNA_A-nodosum_M_contig10214.2.5 vs. uniprot
Match: A0A836CIN2_9STRA (PA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIN2_9STRA)

HSP 1 Score: 469 bits (1206), Expect = 3.280e-158
Identity = 243/424 (57.31%), Postives = 295/424 (69.58%), Query Frame = 1 
Query:    4 SVASRLQISIPAVLHLENGYAHEEALFGIPKYGGSMAERLVHGGVTKGSQKTWTLCSSDDVVAFKTIMPEDSPFILMVDRG--DCTFVSKARLIVRRAQHLGAAGVIIADNTCLCSDVDSKICTKSPDTLCEQVEPIMADDGSGADIAIPSFLMKKRDAEMIKTTLASGQEVQAEMAWSLPAPDDRVEWSLWTSAVDASAALFKRDFKDVVKMLGRKAQFTPYYVIYDGKSYGCTATGANCKSLCTNHGRYCMTDPDFDTNEGVSGSDVVLESLRQKCIWNLYGGPSASKIDQGVGEKWWTYVNEFFSGCPLADKRFSDENCVASAMKIAGIDKGAVDKCMADSGGTSKDTVNRILEQELAEKDKKSIVIVPTVYVNNVAERGGISTAALLSTICAGYKPGTEPDVCRCAGQQTSALVDACMHN 1269
            S +SRLQI IP  L    GY H+EALFGIP YGGS+A+RLV+ G      + + LCS  D   F    P + PFIL+VDRG  DCTFVSK    VRRAQHLGAAG IIAD+ C C+  D++ C  S    CEQ+EPIMADDGSGADI IPSFLM K D ++IK  L   + +Q EM WSLPAPDDRVEWSLWT+A+DA+AA FK +  DV   LG  A FTP+Y IYDG+ YGC     +C +LCTN GRYC  DPDFD + G+SG+DV+ E+LRQKCIW  YGG  A + DQGVG KWW+YVN+F + C     +F+DE CVA+AM   GIDK  + +CM DSGG   D  N +L  EL EK  KSIV+ PTVYVNNV ERGGI+ A++L+T+C+GY  GTEP  C+CAGQ +S+ V  C+ N
Sbjct:    4 SQSSRLQIQIPTELFRSAGYEHQEALFGIPHYGGSIAQRLVYPG---DFDQPYQLCSDVDAAKFTNPNP-NQPFILLVDRGGADCTFVSK----VRRAQHLGAAGAIIADDRCKCAG-DAQ-CDSS--VACEQLEPIMADDGSGADITIPSFLMTKTDGDLIKEHLKLKEFLQVEMTWSLPAPDDRVEWSLWTTAIDAAAAAFKGEMADVAAALGTHAFFTPHYTIYDGEEYGCRDDTHHCGNLCTNAGRYCNPDPDFDRDSGLSGADVIRETLRQKCIWLHYGGAQAPEADQGVGIKWWSYVNKFTTLCNT--DKFTDETCVAAAMSECGIDKTLIGRCMTDSGGLEGDIDNTLLSDELREKSTKSIVVTPTVYVNNVVERGGITAASVLNTVCSGYASGTEPSACKCAGQGSSSAVRLCISN 413
[Close]
BLAST of mRNA_A-nodosum_M_contig10214.2.5 vs. uniprot
Match: A0A6V1XHF6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XHF6_HETAK)

HSP 1 Score: 451 bits (1159), Expect = 4.840e-152
Identity = 233/442 (52.71%), Postives = 288/442 (65.16%), Query Frame = 1 
Query:   10 ASRLQISIPAVLHLENGYAHEEALFGIPKYGGSMAERLVHGGVTKGSQKTWTLCSSDDVVAFKTIMPEDS---PFILMVDRGDCTFVSKARLIVRRAQHLGAAGVIIADNTCLCSDVDSKICTKSPDTLCEQVEPIMADDGSGADIAIPSFLMKKRDAEMIKTTLASGQEVQAEMAWSLPAPDDRVEWSLWTSAVDASAALFKRDFKDVVKMLGRKAQFTPYYVIYDGKSYGCTATGANCKSLCTNHGRYCMTDPDFDTNEGVSGSDVVLESLRQKCIWNLYGGPSASKIDQGVGEKWWTYVNEFFSGCPLADKRFSDENCVASAMKIAGIDKGAVDKCMADSGGTSKDTVNRILEQELAEKDKKSIVIVPTVYVNNVAERGGISTAALLSTICAGYKPGTEPDVCRCAGQQTSALVDACMHNRNTINTGG--RGTSLGNTL 1320
            +SRLQ+ IPA L  E GYAH++ALFG P YGGS++ +L +            LC   D    K     D+   PFILM DRGDCTFVSK    VRRAQH GAAGV+IADN CLC D     CT      CE +EPIMADDGSGADI IP+FLMKK DA+++K  +  GQ V AEM+W+LP PDDRVEW LWT+A+D  A  FK+DF+ V   LG +A FTP+YV+YDG    CT     C +LCTN GRYC+ DPD D ++G+SG+DVV E+LRQ CIW  YGG +A++ D GVG KWW YVN F + C   +K F+   C A+ MK AG+D   VDKCMAD+GG   D  N +L  E++EKD+ SIVIVP+VYVN V ERG + +  +LST+CAGY PGTEP +C CA       + AC+       TGG   G S+G  +
Sbjct:   28 SSRLQMQIPASLEREGGYAHQQALFGKPSYGGSISLQLFY--------TNSALCEGADADPTKWKRNTDNKEAPFILMADRGDCTFVSK----VRRAQHAGAAGVLIADNKCLCGDA---ACTSQE--ACEPLEPIMADDGSGADITIPAFLMKKVDADLVKGQILQGQLVVAEMSWALPNPDDRVEWDLWTTAIDDGAQTFKQDFEVVTSKLGPRAYFTPHYVVYDGNELRCTTASDKCGNLCTNQGRYCLPDPDNDRHKGISGADVVEENLRQLCIWRAYGGDAANQADIGVGTKWWRYVNGFQAACNTPEK-FASAACKANVMKQAGVDSSKVDKCMADAGGLEGDVPNALLAAEISEKDRHSIVIVPSVYVNGVVERGAVLSTTVLSTVCAGYAPGTEPSICACASGVGREEMMACVAADGKKATGGGPTGVSVGGVI 451
[Close]
BLAST of mRNA_A-nodosum_M_contig10214.2.5 vs. uniprot
Match: A0A4D9DEA6_9STRA (PA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEA6_9STRA)

HSP 1 Score: 449 bits (1156), Expect = 2.330e-151
Identity = 229/409 (55.99%), Postives = 279/409 (68.22%), Query Frame = 1 
Query:   13 SRLQISIPAVLHLENGYAHEEALFGIPKYGGSMAERLVHGGVTKGSQKTWTLCSS---DDVVAFKTIMPEDSPFILMVDRGDCTFVSKARLIVRRAQHLGAAGVIIADNTCLCSDVDSKICTKSPDTLCEQVEPIMADDGSGADIAIPSFLMKKRDAEMIKTTLASGQEVQAEMAWSLPAPDDRVEWSLWTSAVDASAALFKRDFKDVVKMLGRKAQFTPYYVIYDGKSYGCTATGANCKSLCTNHGRYCMTDPDFDTNEGVSGSDVVLESLRQKCIWNLYGGPSASKIDQGVGEKWWTYVNEFFSGCPLADKRFSDENCVASAMKIAGIDKGAVDKCMADSGGTSKDTVNRILEQELAEKDKKSIVIVPTVYVNNVAERGGISTAALLSTICAGYKPGTEPDVCRCAG 1230
            SRLQI IP  L   +GY H+EALFGIP YGG +AE+L +   TK       +CS+   D+V  +K      SP+ILMVDRGDCTFV+K    VR AQH GA+GV++ADN C+C D+    C   PDT C+ +EPIMADDGSGADI IPSFL+ K DA+ IK  L     VQ EM WSLP PDDRVEWSLWTSA D+S+A  K +FK+ +  LG+   FTPYY +YDG +Y C     +C SLCTNHGRYCM DPD D   G SG D+V+E+LRQKCIWN YGG +  K ++GVG  WW YV EF   C  +  RF+D NC+  AM  AG+D   ++ CM D+GG  +D  N IL+ EL EK KKSIVIVP+VYVNNV +RGGIS+  +LS+ICAGY  GT+P VC C G
Sbjct:   15 SRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYANTTK-------MCSAPTADEVAQWK------SPYILMVDRGDCTFVTK----VRHAQHAGASGVLVADNLCVCKDL---ACHPDPDTSCQGIEPIMADDGSGADITIPSFLLYKPDADAIKEKLRQESLVQVEMTWSLPTPDDRVEWSLWTSANDSSSAALKEEFKEAMAALGQHQYFTPYYQVYDGAAYNCVNFPDHCGSLCTNHGRYCMPDPDKDPYHGYSGRDIVIENLRQKCIWNHYGGENTGK-EEGVGLPWWGYVREFTEKCSRSS-RFTDPNCIKEAMGAAGVDHKKIEACMEDAGGVDQDRENLILQAELLEKLKKSIVIVPSVYVNNVVQRGGISSVTVLSSICAGYLEGTQPKVCNCVG 401
[Close]
BLAST of mRNA_A-nodosum_M_contig10214.2.5 vs. uniprot
Match: A0A7S2UWY7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWY7_9STRA)

HSP 1 Score: 395 bits (1015), Expect = 2.800e-131
Identity = 196/383 (51.17%), Postives = 265/383 (69.19%), Query Frame = 1 
Query:  166 LCSSDDVVAFKTIMPE----DSPFILMVDRGDCTFVSKARLIVRRAQHLGAAGVIIADNTCLCSDVDSKICTKSPDTLCEQVEPIMADDGSGADIAIPSFLMKKRDAEMIKTTLASGQEVQAEMAWSLPAPDDRVEWSLWTSAVDASAALFKRDFKDVVKMLGRKAQFTPYYVIYDGKSYGCTATGANCKSLCTNHGRYCMTDPDFDTNEGVSGSDVVLESLRQKCIWNLYGGPSASKIDQGVGEKWWTYVNEFFSGCPLADKRFSDENCVASAMKIAGIDKGAVDKCMADSGGTSKDTVNRILEQELAEKDKKSIVIVPTVYVNNVAERGGISTAALLSTICAGYKPGTEPDVCRCAGQQTSALVDACMHN---RNTINTGG 1293
            +C+  DV   K +MP     ++PFILM+DRGDCTFVSK    VRRAQH GAA V+++D+ CLC +  +K  ++ P   CE VEPIMADDGSGADIAIP++L+KK D+++IK  +  G  V AEM+W+LP PDDRVEW+LWTS++D  A L K DF ++ K LGR+A F P+Y+I+DG S  CT +  +C +LCTN GRYC+ DPD D + G+SG+D+V ESLRQ CIW +YG   A + ++GVG  WW Y     + C  +   F+D  C+ +AM  AG+DKG V+KCM +SGGT K  VN +L  E++EKD+ +IVI P+VYVNN+AERG ++   ++STICAGY  GTEP +C+C G     L+ AC+     +   +TGG
Sbjct:    1 MCADSDVAVNKWMMPSPDAAETPFILMMDRGDCTFVSK----VRRAQHAGAAAVLVSDHKCLCGE--AKCVSEQP---CESVEPIMADDGSGADIAIPAYLLKKVDSDLIKGIITQGTLVVAEMSWALPNPDDRVEWTLWTSSLDEGAELLKADFLEITKGLGRRAYFVPHYMIFDGVSLRCTDSDDHCGNLCTNEGRYCLPDPDNDRSNGLSGADLVAESLRQLCIWKIYGSQDAEESNRGVGLPWWEYTVHHATDC--SPDHFADTACIEAAMHAAGVDKGKVEKCMLESGGTEKG-VNDLLAAEVSEKDRHTIVITPSVYVNNIAERGAMTAPQVMSTICAGYAAGTEPGICQCTGMPREDLL-ACVSRDGAKEPSSTGG 370
[Close]
BLAST of mRNA_A-nodosum_M_contig10214.2.5 vs. uniprot
Match: A0A7S0AZC6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AZC6_9STRA)

HSP 1 Score: 393 bits (1010), Expect = 2.680e-129
Identity = 214/438 (48.86%), Postives = 278/438 (63.47%), Query Frame = 1 
Query:    4 SVASRLQISIPAVLHLENGYAHEEALFGIPKYGGSMAERLVHGGV-----TKGSQKTWTLCSSDDVVAFKTIMPEDSPFILMVDRGDCTFVSKARLIVRRAQHLGAAGVIIADNTCLCSDVDSKICTKSPDTLCEQVEPIMADDGSGADIAIPSFLMKKRDAEMIKTTLASGQEVQAEMAWSLPAPDDRVEWSLWTSAVDASAALFKRDFKDVVKMLGRKAQFTPYYVIYDG-KSYGCTATGAN-CKSLCTNHGRYCMTDPDFDTNEGVSGSDVVLESLRQKCIWNLYGGPSASKIDQGVGEKWWTYVNEFFSGCPLADKRFSDENCVASAMKIAGIDKGAVDKCMADSGGTSKDTVNRILEQELAEKDKKSIVIVPTVYVNNVAERGGISTAALLSTICAGYKPGTEPDVCRCAGQQTSALVDACMHNRNTINTGGR 1296
            S++S+LQ+ IP  L++  GY H EALFG+P YGGS+ + L +           ++K + + S D+      + P  SP+ILMVDRG CTFV K    VR AQ  GAAGVIIADNTCLCS  DS  C   P T CE  EPIMADDGSGADI+IPSFLM K+DA+ +K  L +   VQ EM W+LP+PDDRVE+ LWT+  D  +  F++ FKDV   LG +A FTP+  +YDG KS+   A G N C +LCTN+GRYC TDPD D + G+SG+DVV ESLR+ CIW  YG         GVG++WW YV EF   C   D  F++E+CVA A K AG+DK  V +CM DSGG  KD  N  L+ E+A + ++ +V++PT +VN VA RG ++   + + ICAGY  GTEP +C    QQ S     C +  + +  GG+
Sbjct:   32 SISSKLQVHIPQTLNMPGGYDHREALFGVPPYGGSLQQNLYYADSDLCDPAVDTRKGYPIRSKDND---GNMQPWPSPYILMVDRGGCTFVQK----VRNAQRSGAAGVIIADNTCLCSAGDS--CHSDPGTDCETREPIMADDGSGADISIPSFLMFKKDADAVKAELRANHMVQIEMTWALPSPDDRVEYDLWTTPSDLVSRDFQKGFKDVATALGDRAYFTPHMYVYDGIKSHCQGADGENMCFNLCTNNGRYCATDPDNDLDHGISGADVVRESLRRICIWKHYGE------SDGVGKEWWDYVAEFLHRCDTPDY-FANEDCVADAYKHAGVDKDRVQRCMLDSGGLEKDAPNSFLDLEMAAQARRGVVVLPTAFVNTVALRGALTADMVFAAICAGYLDGTEPKIC----QQCSK----CPNEIDCVKAGGK 445
[Close]
BLAST of mRNA_A-nodosum_M_contig10214.2.5 vs. uniprot
Match: K0R5E7_THAOC (PA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R5E7_THAOC)

HSP 1 Score: 381 bits (978), Expect = 1.600e-124
Identity = 209/415 (50.36%), Postives = 261/415 (62.89%), Query Frame = 1 
Query:   10 ASRLQISIPAVL-HLENGYAHEEALFGIPKYGGSMAERLVHG---------GVTKGSQKTWTLCSSDDVVAFKTIMPEDSPFILMVDRGDCTFVSKARLIVRRAQHLGAAGVIIADNTCLCSDVDSKICTKSPDTLCEQVEPIMADDGSGADIAIPSFLMKKRDAEMIKTTLASGQEVQAEMAWSLPAPDDRVEWSLWTSAVDASAALFKRDFKDVVKMLGRKAQFTPYYVIYDGKSYGCTAT-GAN-CKSLCTNHGRYCMTDPDFDTNEGVSGSDVVLESLRQKCIWNLYGGPSASKIDQGVGEKWWTYVNEFFSGCPLADKRFSDENCVASAMKIAGIDKGAVDKCMADSGGTSKDTVNRILEQELAEKDKKSIVIVPTVYVNNVAERGGISTAALLSTICAGYKPGTEPDVC 1218
            +S+LQI +P  L     GYAH EALFGIP YGGS+A++L +          GVT+G         S ++      MP  SP+ILMVDRG CTFV K    VR AQ +GAAGVIIADNTCLCS  D   C   P   CE+ EPIMADDGSG+DI+IPSFLM K DA+ +K  L +   V+ EM WSLP+PDDRVE+ LWT+  D  +  F++DFK     LG +A FTP   IYDG   GC    G N C +LC+N+GRYC TDPD D + G+SG+DVV ESLR+ C+W LYG     K D GVG +WW YVNEF   C  +++ F+ + CV+ AM  A +D   VD CM DSGG   DT N +LE +L  KDK  +VI+P +YVN V+ RG +    +   IC+GY+ GT P VC
Sbjct:   41 SSKLQIHVPKTLTKAGGGYAHREALFGIPPYGGSIAQQLYYADDTLCENKPGVTRGGYPIRAKDESGEM------MPWQSPYILMVDRGGCTFVQK----VRNAQRVGAAGVIIADNTCLCSAGDQ--CHSDPGRDCEEREPIMADDGSGSDISIPSFLMFKEDADEVKAELQANHHVRIEMTWSLPSPDDRVEYELWTTPTDVISRDFQKDFKMAAVALGDRAYFTPQQYIYDGIRSGCQGIDGENDCFNLCSNNGRYCATDPDNDLDRGISGADVVGESLRRMCVWKLYG-----KKD-GVGTEWWDYVNEFLFRCN-SEEFFASKQCVSDAMGHARVDPAKVDACMEDSGGLEGDTQNSMLESQLVAKDKSGVVILPAMYVNRVSIRGSLEFPVVFKAICSGYESGTTPSVC 436
[Close]
BLAST of mRNA_A-nodosum_M_contig10214.2.5 vs. uniprot
Match: A0A7S2XLY3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XLY3_9STRA)

HSP 1 Score: 380 bits (976), Expect = 2.510e-124
Identity = 208/451 (46.12%), Postives = 276/451 (61.20%), Query Frame = 1 
Query:    4 SVASRLQISIPAVLHLENGYAHEEALFGIPKYGGSMAERLVHGGV-----TKGSQKTWTLCSSDDVVAFKTIMPEDSPFILMVDRGDCTFVSKARLIVRRAQHLGAAGVIIADNTCLCSDVDSKICTKSPDTLCEQVEPIMADDGSGADIAIPSFLMKKRDAEMIKTTLASGQEVQAEMAWSLPAPDDRVEWSLWTSAVDASAALFKRDFKDVVKMLGRKAQFTPYYVIYDG-KSYGCTATGAN-CKSLCTNHGRYCMTDPDFDTNEGVSGSDVVLESLRQKCIWNLYGGPSASKIDQGVGEKWWTYVNEFFSGCPLADKRFSDENCVASAMKIAGIDKGAVDKCMADSGGTSKDTVNRILEQELAEKDKKSIVIVPTVYVNNVAERGGISTAALLSTICAGYKPGTEPDVCR----CAGQQTSALVDACMHNRNTINTGGRGTSLGNTLF 1323
            +V+SRL+I IP  L  E GY H EALFG+P YGGS+A+ + +           +++ + + + D     +   P  SP+ILMVDRG CTFV K    VR AQ  GAAGVIIADNTCLCSD D    + + + +C+  EPIMADDGSG DI+IP+FLM K+DA+ +K  + S   VQ EMAW LP+PDDRVE+ LWT   D+ +  F+++FK+V   LG +A FTP+  +YDG KS+   A G N C +LCTN+GRYC TDPD D  +G SG+DVV ESLR+ CIW  YG         G+G +WW YV EF   C   D  F++E+C+  A K + ID G VD+CM DSGG  KD  N  L+ E+  + ++ +V++PT +VN  A RG +S A++   ICAG+  GTEPD+C     C  Q        C H      +GG G    +T F
Sbjct:   25 NVSSRLEIHIPHSLFKEEGYDHREALFGVPPYGGSIAQNVYYADADLCDPNVDTRRGYPIRAKDSSGKME---PWASPYILMVDRGGCTFVQK----VRNAQRSGAAGVIIADNTCLCSDQDCV--SANGEDVCQTAEPIMADDGSGGDISIPAFLMFKKDADTVKAEVRSNHVVQMEMAWKLPSPDDRVEYDLWTVPSDSVSKEFQKNFKEVAVALGDRAYFTPHMYVYDGIKSHCQGADGKNMCFNLCTNNGRYCATDPDNDLEKGTSGADVVTESLRRICIWKHYGEAD------GIGVEWWDYVAEFMHRCDTPDF-FANEDCIKDAYKHSNIDGGMVDRCMRDSGGLEKDVPNAFLDLEINSQTQRGVVVLPTAFVNTAAIRGSLSVASIFDAICAGFLDGTEPDICTKCVSCPDQIGCVRAKKCAHT-----SGGGGGVAPHTFF 454
[Close]
BLAST of mRNA_A-nodosum_M_contig10214.2.5 vs. uniprot
Match: A0A7S2MTN1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MTN1_9STRA)

HSP 1 Score: 380 bits (976), Expect = 5.930e-124
Identity = 211/455 (46.37%), Postives = 275/455 (60.44%), Query Frame = 1 
Query:   10 ASRLQISIPAVLHLENGYAHEEALFGIPKYGGSMAERLVHGGVTKGSQKTWTLCSSD-DVVAFKTI---------MPEDSPFILMVDRGDCTFVSKARLIVRRAQHLGAAGVIIADNTCLCSDVDSKICTKSPDTLCEQVEPIMADDGSGADIAIPSFLMKKRDAEMIKTTLASGQEVQAEMAWSLPAPDDRVEWSLWTSAVDASAALFKRDFKDVVKMLGRKAQFTPYYVIYDGKSYGCTAT-GAN-CKSLCTNHGRYCMTDPDFDTNEGVSGSDVVLESLRQKCIWNLYGGPSASKIDQGVGEKWWTYVNEFFSGCPLADKRFSDENCVASAMKIAGIDKGAVDKCMADSGGTSKDTVNRILEQELAEKDKKSIVIVPTVYVNNVAERGGISTAALLSTICAGYKPGTEPDVCR----CAGQQTSALVDACMHNRNTINTGG-RGTSLGNTLF 1323
            +S+LQ+ IP  L+   GY H EALFG+P  GGS+ + + +            LC  + D  A   I         MP  SP+ILMVDRG CTFV+K    VR AQ  GAA VIIADNTCLCS  DS  C   P   CE  EPIMADDGSG+DI+IPSFLM K+DA+ IK  L +   V+ EMAW+LP+PDDRVE+ LWT+  D  +  F+R FKD    LG +A FTP   +YDG   GC    G N C +LCTN+GRYC TDPD D + G+SG+DVV E+LR+ CIWN YG  +      GVG +WW YV+EF   C   D  F++++C+  AM  A ++ G + +CM+DSGG   D VN IL+ +LA KD+  +VI+P ++VN  A RG +  A +   ICAGY  GTEP +C+    C  +      + C  + ++++T    GT  G TLF
Sbjct:   62 SSKLQVHIPTHLNKAGGYDHREALFGLPPRGGSIQQNVYYADSN--------LCDPNVDTHAGYPIRPQGEDGQMMPWPSPYILMVDRGGCTFVNK----VRNAQRSGAAAVIIADNTCLCSAGDS--CFSDPGVDCETREPIMADDGSGSDISIPSFLMYKQDADPIKAELQANHMVRIEMAWALPSPDDRVEYELWTTPTDIISRDFQRQFKDAAVALGDRAYFTPNMYVYDGIMSGCQGEDGENQCYNLCTNNGRYCATDPDNDLDRGISGADVVTETLRRMCIWNEYGKGN------GVGAQWWDYVSEFMFRCDTEDY-FTNDDCITDAMTHASVNVGKIQQCMSDSGGLEDDVVNTILDAQLAAKDQSGVVILPAMFVNKAALRGALEFATVFKAICAGYLAGTEPSICKKCANCRDEHKCVTTNHCSSDDSSVSTNTFAGTIFGLTLF 495
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10214.2.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR61_ECTSI1.200e-22772.23PA domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A835YNB1_9STRA4.220e-15956.64PA domain-containing protein n=1 Tax=Tribonema min... [more]
A0A836CIN2_9STRA3.280e-15857.31PA domain-containing protein n=1 Tax=Tribonema min... [more]
A0A6V1XHF6_HETAK4.840e-15252.71Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A4D9DEA6_9STRA2.330e-15155.99PA domain-containing protein n=1 Tax=Nannochlorops... [more]
A0A7S2UWY7_9STRA2.800e-13151.17Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0AZC6_9STRA2.680e-12948.86Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
K0R5E7_THAOC1.600e-12450.36PA domain-containing protein n=1 Tax=Thalassiosira... [more]
A0A7S2XLY3_9STRA2.510e-12446.12Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2MTN1_9STRA5.930e-12446.37Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10214contigA-nodosum_M_contig10214:4577..16569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LR61
Preferred nameVSR1
PFAMsPA,cEGF
Model size1373
Max annot lvl2759|Eukaryota
KEGG rclassRC00718
KEGG koko:K01859,ko:K17637
KEGG ReactionR02446,R06556,R07990,R07995
KEGG Pathwayko00941,ko01100,ko01110,ko04014,map00941,map01100,map01110,map04014
KEGG ModuleM00137
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0005048,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005773,GO:0005783,GO:0005794,GO:0005802,GO:0005886,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0007034,GO:0008104,GO:0008150,GO:0009940,GO:0010008,GO:0010209,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030135,GO:0030136,GO:0030659,GO:0030662,GO:0030665,GO:0031090,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098588,GO:0098791,GO:0098805
Exons10
Evalue2.37e-209
EggNOG OGs28KFV@1|root,2QSX2@2759|Eukaryota
EC5.5.1.6
Descriptionamino-terminal vacuolar sorting propeptide binding
Cds size1251
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10214.2.5prot_A-nodosum_M_contig10214.2.5Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10214 4685..16555 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866386.0108075-UTR-A-nodosum_M_contig10214:4576..46841680866386.0108075-UTR-A-nodosum_M_contig10214:4576..4684Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10214 4577..4684 +
1680866386.1378922-UTR-A-nodosum_M_contig10214:16555..165691680866386.1378922-UTR-A-nodosum_M_contig10214:16555..16569Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10214 16556..16569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866386.024102-CDS-A-nodosum_M_contig10214:4684..46931680866386.024102-CDS-A-nodosum_M_contig10214:4684..4693Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10214 4685..4693 +
1680866386.0357547-CDS-A-nodosum_M_contig10214:5265..54271680866386.0357547-CDS-A-nodosum_M_contig10214:5265..5427Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10214 5266..5427 +
1680866386.0442173-CDS-A-nodosum_M_contig10214:6429..65991680866386.0442173-CDS-A-nodosum_M_contig10214:6429..6599Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10214 6430..6599 +
1680866386.0537333-CDS-A-nodosum_M_contig10214:12289..124401680866386.0537333-CDS-A-nodosum_M_contig10214:12289..12440Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10214 12290..12440 +
1680866386.0697565-CDS-A-nodosum_M_contig10214:12692..127971680866386.0697565-CDS-A-nodosum_M_contig10214:12692..12797Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10214 12693..12797 +
1680866386.0797613-CDS-A-nodosum_M_contig10214:13476..136471680866386.0797613-CDS-A-nodosum_M_contig10214:13476..13647Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10214 13477..13647 +
1680866386.0904298-CDS-A-nodosum_M_contig10214:14504..146161680866386.0904298-CDS-A-nodosum_M_contig10214:14504..14616Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10214 14505..14616 +
1680866386.1038008-CDS-A-nodosum_M_contig10214:15052..151501680866386.1038008-CDS-A-nodosum_M_contig10214:15052..15150Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10214 15053..15150 +
1680866386.1162364-CDS-A-nodosum_M_contig10214:15621..157471680866386.1162364-CDS-A-nodosum_M_contig10214:15621..15747Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10214 15622..15747 +
1680866386.1283817-CDS-A-nodosum_M_contig10214:16408..165551680866386.1283817-CDS-A-nodosum_M_contig10214:16408..16555Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10214 16409..16555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10214.2.5

>prot_A-nodosum_M_contig10214.2.5 ID=prot_A-nodosum_M_contig10214.2.5|Name=mRNA_A-nodosum_M_contig10214.2.5|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=417bp
MAERLVHGGVTKGSQKTWTLCSSDDVVAFKTIMPEDSPFILMVDRGDCTF
VSKARLIVRRAQHLGAAGVIIADNTCLCSDVDSKICTKSPDTLCEQVEPI
MADDGSGADIAIPSFLMKKRDAEMIKTTLASGQEVQAEMAWSLPAPDDRV
EWSLWTSAVDASAALFKRDFKDVVKMLGRKAQFTPYYVIYDGKSYGCTAT
GANCKSLCTNHGRYCMTDPDFDTNEGVSGSDVVLESLRQKCIWNLYGGPS
ASKIDQGVGEKWWTYVNEFFSGCPLADKRFSDENCVASAMKIAGIDKGAV
DKCMADSGGTSKDTVNRILEQELAEKDKKSIVIVPTVYVNNVAERGGIST
AALLSTICAGYKPGTEPDVCRCAGQQTSALVDACMHNRNTINTGGRGTSL
GNTLFCFWSWSGLWLR*
back to top

mRNA from alignment at A-nodosum_M_contig10214:4577..16569+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10214.2.5 ID=mRNA_A-nodosum_M_contig10214.2.5|Name=mRNA_A-nodosum_M_contig10214.2.5|organism=Ascophyllum nodosum dioecious|type=mRNA|length=11993bp|location=Sequence derived from alignment at A-nodosum_M_contig10214:4577..16569+ (Ascophyllum nodosum dioecious)
CAGAGCGTTGCCTCTCGGCTGCAAATCTCAATCCCAGCGGTGCTGCACCT
TGAGAACGGTTACGCCCATGAAGAAGCTCTCTTCGGGATCCCCAAATACG
GCGGCTCCATGGCGGAGGTGAGATCGGTTCTGGCGCCATTGTCGAGAATC
GTGAATCCTCTTACACGTGAGGGCGACAGGGCGTTGCCGCCGTGCACAGG
TCTTGCTATAAGAGGTTTGTCCCGGCTCATAACACGCCGCAAGCTTGCCC
GTGTATGTGTACCAATAACGTCGTCGTGTGTTTGGTACTCCGTGTTTGGT
TTCGGAATGGGAATGGGATGAGGGGACTCTCGCGTTATATACTCGAAGAA
GTCATTCGCGAAAGAGCGCACCGTGCGCCAAACGTTTACGGTACGAACCT
CGCGTCTGTTTGTCATCGCACCAGTTTTTAGCTTTGCTTAATCGTTTGTG
GCAGTCCCGCCATACACCTGGCACATCGTGGGTTGACGTGCCACAGCGCG
CGTCGAGACTGAAGACCGTGCGTGAACAGCCCAGAAGCAGGCACATACAC
TAGGTTTGTTTTTGAGGCGTTCGATGTTCCTGATCTTGTAGCCTATAGCG
ATCCATTCATTTCGTCTCTCCTCTCCACCCACTGGGGTGTAGCTCCGACT
CTGGTGTCCCATCACACGTCCGGCCGATCGCGTGCGCAGAGGCTCGTCCA
TGGCGGCGTGACGAAGGGGTCACAGAAAACGTGGACCCTCTGCAGTAGCG
ACGACGTCGTGGCGTTCAAGACGATTATGCCGGAGGACAGCCCTTTCATT
CTCATGGTGGACCGAGGGGACTGCACATTCGTCAGCAAGGCACGACTAAT
AGTACCTTTTTGTATGTACCTGATACAACCCCGATACTGGCGTTTGTTCT
ATCAATAGGAAAGTAAGCTGGTAATGTCCCCACTTGATTCTGAGACGCCC
CCTTGGGCGAGGATTGTGAGCACGACTTGTATTAGGAGCGGTTTTACGCC
GCCGCTGATGGTGGTGGTGGTGGTGGTGGTGGTGGTGCTCTTTAACCCGG
CGAAAGGTATGGGTTCGATAGGTACGAGGCACGTACTTGAACTCAAGTGA
TAAGAAACCCGGAGCTTCACGGGACTTATCCTGACGTGTTATGGTTTAAT
TAGATGGGGCCGGCGATGTATGCTTGGAATGTAGATAAAGTACACACAAA
CAAACAATATTTGTTATGAGAGCTTGGTCGAGGTAGGTTGATACGAGACT
CTAAATCACAGTGATGTATAAAATGGTCACAGGGGAATATAAAGCTGAAT
CCCCTACCTATGGACCCTGAAGCCTACTCCTGTACTCCGATAAACCGTTT
CACTATATATCCGCATGTGTAACGATTCTACGAGTAAACTCATCAAGAAT
ACACACATGTAAACGCAAGAGGAAGACTGTGGGAACTCATGTGTAGTGTT
GCAGCGACTTCGACTTGGAACTACTAGTGCTATTGGTATTGAGGCATTCG
CCACAAACTTCCGGCACAGCACGCGTCGTATCTCGTTGTCTGCTCAAGTT
TTTGGCGAGGTTTCATAGAGGTTTGAGAGCTTTTTAGCGCTTGGTGGGGA
AGGGCCATGGTACCTGTATCGCTCCATTATTACCTCGCCTGGGGTCTCAT
CAAGGCGCATTGCCTCGGAAGGGGGTTGTACGAGCGTTCCCGCCTGTTTC
GTTTCGTCATTTTTTTTAAAATTCTCCATTGGACTGTGACTATCTGACTA
TCCCAATCACGTGGCAGGCCCAAGACGTTTGGTGCGTACTGTTTTATATG
TGAAAACAGACAAGTTGGTGCGTGCGCTCTCGCCGGCGTTGGTGGTTTTG
CAGGTGCGCAGGGCGCAGCACCTCGGAGCTGCGGGCGTGATCATCGCCGA
CAACACCTGTCTTTGCAGCGACGTGGATTCCAAGATATGCACAAAATCAC
CAGACACCCTGTGTGAGCAAGTGGAGCCCATCATGGCGGACGACGGGTCG
GGCGCGGATATCGCGATTCCCAGGTACCAAAGCTCGCAGAGACGCTTGCG
ACGTCTCAGTCGAGTTCTTATGCTGATTTTTGGCTCCCAAATGGCGTGGA
AATCGTTTCAAGCTTTTTTTTTGTGTGTGTTGACAGGCCGCCGACAAAAT
GAATTGTGTGTGCAATGTAAGTCCCTTACTTACCATAAGCCTCCATCGTC
AGGGGGCCCGGAGCTCAACGCTTGCGAATTTCTCTTGCTTTTTCCTCTCG
GAGGGCGTTGAAACCCTAACCCTTAACACGCACGAGTTTTTTATCGAGGT
GTGTACCCGCTCTGACGGCTCCTCTGACGCCTCCGTCGAGAGTCACTTTA
CTCAAGCTATCTCGGAAAATGTATGTATGTCCTATCAATAAGTGTCACTG
TTTACTTCTGACCCCTGGCATGGGGGTAAGAGATTCGTTACACAGTGATG
GCGGTGTATTAAGGATGTCGGTATCATGCCCTGACTTGACTCCGTACGCT
TGACCACATCCGTTATTGGAACACTTCAAAATATAGCCATTCAAAGGCAA
GACAATTTTATTTTGTTGATTACTCCCCCAAAGATTGAGATGAAATGGAC
GAATTAATTCATTCATGGGAGGTAAAAAAGAGCTCCGAAAAGTCGGAATG
ACGCTAttTTTTTTCAtTTTTTTTCCTATCAAGAACGGAAGTGCTTCTCC
CCGACATGATACTGTTGACCCAATGTTACTACCACTGGGGAACCCGTTTA
AATGCCATGAAGACGTTTTGTCTTTGCAGCCTATGATCCCACCTAAGCGT
TTCGACATGTTTTCCCCCTGAGTGGGATGCTCAGAAGGTCTAGATCCGTT
CAGATTTTTCTTTTGAAAAGGTCTCACGAAGGTAAATCTATCCTTTAGGC
ACCACGACCACTCAGCACGCTAGTACGCCACACCAGGCCAGGACCTTTGG
TCGTCTGGTCTCCACCACTCAGCACGCTAGTACGCCAACCCCGTCGGGAT
TCCGCCGCTATACTATGCTACACTATCCTGTACTATAAATGACAGTTATC
ACCTTGTCGAAGGATGACTTTTCAATGTTGAAAAGATAGCTTTCTTAACC
ATAAGCCCGAAACCAATGAGTGTTTTATTTGTTTTGTGAAAGTAATTTAG
AAGAAAAATATGTTGAAATGATCTTCTGGCGGTCGTTGATGAAGGGACTA
CATAGGTAGCTGCTCGATTTAGACAGGATTGAGCGAAAACCACGCGACAT
CTCTGGAGGCCGCACGATATCGACATTAGAAAATGCTTTCTGCTACGCTA
CGCCATTCTGCTAGCTACGCCCAGTCTGCCTGAGATATTGCATGAAACCT
CCGCTGCCGTTTTCGCAGACTCAAAATCCCTCCGCCCCAGGAACACCACG
ATGCTCTTTGTTAGCTAACTAACCCTCTTCGTGCACGGTCGTTTTTTAGT
ACACACAAAACCTGGATAAAAAGTTGCACCTGAGTGCCAAAAGAGTTGAA
AATACGGTCTTCGGTTGCCAGCATCGAAGCACGATAAAAGGTTTCCACGA
GGCGTTAGTTGATCGATGCAGATGAAGCAAAGCTTAACCCTGAGGAACAG
CACAGCATCCTAGCCTCGATACTGCTCGTCCGTTGCCTCGAAGAGTCGGG
CGGGATCCATCTGCCAAAAGGGCATCATAAATATTGGCGTCACGCCGACA
GAAACCTATGTTTCCGTAGTTGCCGGTACTTTCAACATACCCACTTCATA
CCAATAGTGGGTGTGGAAAAGATAGGCGCATATTAATTGGTCCATGGTGA
CCTGCCAAGGCAGCACCCATTTGGAACTGCCTTGAGGTTTACTGGCCCTG
TACCGGCGGACTCTCGGCAGTGAACGCCATCGGTACGCAATCGCGCGACC
CGATAAACTCGGCACTGATCCGATGGCGTAGGGCGGTTTAAATAAATAAA
TGGACACCGCCGCGGAAATGGGAGGAATCCGGTAAGTAAGCACCATATTC
AGCCTGAGTATGGAAATGAGCAGACCGACGCGGGACGAGACTGCCGAACC
CGTCTCACGAGACCAAATTCTCAGGCGCGAACGGGGACCGGGAAATATTC
ATTTCCCCTTTTCAGCTGACAACGAGCAGGATTGACGATGGCTCTTTTGA
AAAGGTGAAATGAGAGTGGGGGGTTTACTGGAAATGAGACCCCGGCAATA
GAAGTCCTTTCATCATAAAAAGAGGCCCTGTGCTCTGCGCTCTTAATATA
TCCGTATACTTTCCCTTGCCGAAAAAACGCCCTTGCCAACTAATTTAGGT
GATGGTACGGATTATTTCTATTAATAGTAGTCCTTTGATACTATTAAATA
CCAGTAATAATTATCTTGTTACAGAGGTCCAACGAGGTTGATTTGATAGC
AAGGAGCTTGTGTTGATACTGAAGGTCTCCATAAAGGTTGTCTTTCCCAC
GTCTGATATGAACTATTAAGTACTCCTACGAGCTGGGCCGAGCTAAAATC
CAAAAACGTTTCTTTCGATTGCACCTCACGAACTACAACGAGCTACACCA
CATTCCGGGTACTGTTGCAATCGTCCAATCATAGCGCAGGTTCACGACCT
TACAGATAGCTCTGTGATTGGGCGCGTCTTTTACAAATAGCCTGTGGTGC
GAGCGAAAAAAAATATCTGAACGCATCTAGACCTTCTGAGTTATCACTCT
ACAGTACAAGTTTCTGAAACGTTATTAAACAAAAATCTGAACGCACCTAG
ACCTTCTAAGCATCCCCCAGTCAGGGGGAAAAAATGTCAAAACGTTTAGG
TGGGATCATAGGCTGCAAATACAAAACCTCTTGTTTTTTTCATTCAGAAA
TGGAGCGAAGTTCATGCGGCGGAATTAGAGCACATTATGTTGTCACATCA
CATGAAACAATCGATACTCGTATGGCGTACCTTGGTACTGCTGTATATAA
TACTGTAATACTGTAGTACTGTACCAGCTCCGCTGCCGCTGCTCGGACAC
ACTGCGGTGCAGCATGGCTTCGAAATTGGAGTAAGGCTGAATAATTGACA
CCATGTTACTATTAATAGTTATAGTTATAGTGATAGTAACATGGGTACTA
CCGACACTCTCCCGAAGAAATCATGCTCCGTTTTTTTTGTGTTTTGCTCG
AGTTACGAGTATATCGTCGATCTGCTACAGTATACGCGGGACGGGACGGC
TGAACCCGTCTCGCGAGATCAAATTCTTTGGCCCGAACGGGGACAGGGAC
ATTTTCACTTTCCCTGTTCAGCTGACCACTATTAATAGAAGGATTGGCAA
CCTTACCCGGTTGATCCATACTTGCTACATGTGATGAGCATACGTACATA
CATACTGTAAACTCCCAGCATATTTTTTACTTTTATACGCCACGAATGGT
GAAACCGAAAAACCGTCACCCACCGCCCAATTTTATGAATTTGGAGCTGA
AATTCTAACGCCGTGTGCGGATTGCATATAGAAAATTCCCCGAAGTGTCC
TTTTTCGTTTTTTGTTTTTCAGCGGAGATTTGTTCGATTGTCGAATAGCT
GATGTTAGAAAAATGGAGACACCTCGATAAAAAAAAAGGAAAAGAAGAAA
AGGACACACTCGAAAGGGTCGGCACATGCGATCCAACTATTGTGTTAAAA
TCTCAGGTCCCAATTTGAATATTTGGGCAGGGGCTTGTCGATCAAGTGCC
AGTACAGTGCCAGTATAGTTTCTTGCCTGGCCCAGTTGGAATGTTTCTCA
AAACTAAATTAAAGTTGAAAAATGCGTGAGTACCTTTCTTCCAGCTGTGT
AACTATTCGACAATGCCGTATATGCTTGCACTAAATATATGTAATATTTT
TAGCTGTTTCCATGCTTCATCCTCTAGAAAAGGCCCAGACACCCGCCAAA
CGTTGTAGTTTTAAAACCAGTATAGTAGACCGAGAACCCAGGTACAGTAA
AGTAAAGTAATCTGATCCCCGGCAAGTAATTCCTTCCTTTCACTTTGAAC
CACGAGTAACTTACATAGATGCCTCTTTTTTAATGTCTACCTCAACAAAT
ATTTCGTTTCATCCACGTCCAGAGAGGTACCTGACCTGCTGTGGCGTTCT
GATAAAAAATTACACTATTTCCATTCGAATAAAAAATCTTGCCAAGGAAA
AAAGAGAAATGATACTTTTATACTGTATCCCTCTCACGGAAGTCCTATTA
GTAAGATGAGGCGGTGCTATTCGACCCCGAGAAGCCCTTGCTGTCGAGAG
GTGCTATTCGCAGCATGATGGGCCCGAGAGGAGGGTGCGTGCATAGAGGG
GCATCGACGTAGATCCGGCGTGCAATACTTGAGCAACACGTTAACAGCCC
CGGGGACGAGATGCTTCCGCCAAAAATGCTGCCGCAGGACGCCACGGCCT
CACTGTAAGAGGACAAGGAATCCCTCGGGCCGAGCGAGAGCGTGGTGAAT
GCATCCTTGGGGCGAAAAAGAAagAGAAACGCAGGATTTATTCCGCATTC
CGAAGCTTAAACTGTTTACGTCCTTGCCTTCATGTCTTGCCACACTCCGT
CGCCACCTAGAGACGAGACCCGTCTTAGATGTGGAGTAACTTGTTTCCTC
AACAAGGTGCGGTATCCTTCGCTTTCTTGCAAGTGTCATCCTTCGCAGCG
TTGTTGAGGAAACAAGAGGCTGTTGGCGAGGCGTTCTGTATTTGGGGGCT
TGCAGCGAACGAACCGTTGTGCCTCAAATGTAGCATCGCGATTTCAAACG
TTTGGATAAAATGGGACTCTTGGGGGGATCTGGTTGGAGGTGACCCTGCT
CTTTTTGATTTTATTGAGCACGTGGTCGTGTCTCCTGCACGCCACGCATC
GATCAGACCACCTAGGTCGCCGAAACGGTCATTATTGTTGCGTTCATGCT
TCCGCCATCAGTCGCACCAAGGTGTTTTTCTTCGAGGCGTGAGAATCATC
ACCCAAAAATCGAACTCGTCGTAACGAACCCCTCCGTGTGGACTTCCAAT
GTTGTTGAGGCTTTTGAAAAGTCTTGGCCTCTTTTTGCAACGGAGTGAAG
AAAGTTTTTATAAAGTTTTTAGATTTTTTTTTTATTGCATCTCTAAAGGC
TTTGAAATAAGTTTTTTAGTTCGTCGTTGCTTTTTTTCGAGTGTGACTCT
TCCCGGTCGAACCAAAAATACAGTACAGTACAGTAAGTAGGTAATACGAC
AGAGATCCCAAACGTGGGCGCAGGCAGGTCTGTCGTATGACGTATGACCT
ACGAATCCGAGATCAGAGGAATAGAGTTATGACCAGGGTTTGTTTTTTTT
CTGTGTTTGGGTGTGCGTGCAGCCCACACGGTGTGTTTTTACGGTGTCAT
CCTTCAACGATCGTCCCATTTCTTGACTAGAAACACACCTCCACTCGTCG
GGGCGGTGCTAAAGAGTGGCGGAGAAGAGCGCAGGAACGTTAAGGGGCGA
CGCCAGAGAAGAGCATCGTCATCCCTTAAACGCACCTCTGCACCTCTGTT
TCTCGCCACGGTTTGATAAAATAGAGTGATCGACGCTCGCCAAACAATGG
AATTGATTGTATTTAGGTATTTAATCCCTCCCCATACCACCACGGGTTGG
TTCCTGTGCCGTGCCGTGCCGTGCCCAAAACCGTTGGGTTTGGTCGTGTG
TGCAACTTTTGCGTTTTCTCGCGCGCTTGAAATGAAACTGAAAACTCAAA
TGGAAATGGAAAGCTTTCTCATGAAAAAGAGGGACGCTGAAATGATCAAG
ACAACCTTGGCAAGTGGCCAGGAGGTGCAGGCCGAGATGGCGTGGTCCTT
GCCCGCCCCGGACGACCGAGTGGAGTGGTCGCTGTGGACCAGCGCCGTCG
ACGCGTCAGCTGCGGTGAGCCCACCCCGGTGCTGACGCCTTCGACCAATG
CATTCGCTTTGTCTTCCTCGAAGGATGCACAAAAGAGCGTCGGAGTCGAT
GATCCTTTGTCCCCTCGCCCTGGACCATTTTGACACCTTTTGTCCCCTTC
TGCGGGACCCCCCCCCCATAGCATAATCAAACACACTCAAGCACACTCTA
TTTTGATTGCCCGACGGGTAGACTTTGAGTTACCGTCGCCTTACTGACTG
CTCGTGACTTTGGCAGCTCTTCAAGCGCGACTTCAAGGACGTGGTGAAAA
TGCTCGGGCGAAAAGCGCAGTTCACCCCCTACTACGTGATCTACGACGGA
AAGTCGTACGGCTGCACCGCGGTGAGAGCCAGGAAAATCGGGGAAGCACG
GGAAAGAGTCCGGCTCCTTTACGAAAAGTGCGGTGTCTCGTGGCTTCACG
ATTACGACTCTCGCTTGTGTCGTGTTTTGGCGAAGGCGTTTCTCGTATCG
CTCGTGTGTTGGCCAAGACTGAAGGCTGAAATGGTGTTGCGGTATGCAGG
GTTGAACATTTACGCGGAAGTGGTCTATTAATAGAACTTTCTTTCTTTCT
TTCTTTTTGTTGTTGTTGTTGTGACGACTGTTCTGTTCTGGTGGTATCAC
CGATCGACATACTGAGTATTGTATTGCCATTTAAGATACCTAAAAAAACT
TTGAAAACACGGAAAAAAGAAAAAGAAAAAAATGCAAGGGTGGGCAGCCT
GTCATTGTGTCGTGCAATATGTAATGATCATGTTCATGTGTCGGATTGTT
TTCGGTCGGTCTATACGTCGTTTCCCGGACGAACCGTTTCCGCCCACGTT
CTCTGACTGAAGTGATGACTGGCCCGCCCTTTTATTTCGACGGTACATAA
TAAAATACCCTTAGTCGGTGTTTTCGTTCGGCCGTCTTGCTTTTGCTCGC
TGTCTTCGTGCAGGTGCCAACCTTGTCCCTTGTCCCCCCTCACCTCCCCG
CCCCCTTCCAAACTGAACGCCCGTCCCCGTCCCCGTAACCTTGACTTCAG
ACGGGAGCGAACTGCAAGTCTCTGTGCACCAACCACGGCCGGTACTGCAT
GACCGATCCGGACTTCGACACCAACGAGGGCGTGTCGGGGTCGGATGTTG
TGCTGGAGTCCCTGCGGCAGAAATGCATCTGGAACCTTTACGGGGGCCCT
TCGGCATCCAAGATCGACCAGGTGAATTTGGAACCTCTAGGCACAGGGTC
GCCCCGCTGGCGAATGGTACGCGAATGACCTGTTCAGTGAAGATGTAATG
AAAGTACAACCGCGTCGCTTTTATCGTGTTTGGCGCTGGGATGGTGATTC
ACTCGAGGGGGGACCCGTCATCGTACCGGGGCGGCCCTCGTGATGCCGAC
AAAAATTTTGTACGCGCGGCGTTATGCTAGGAGTCGTTGCTGCTGTGCAC
CGTGCGCACGCCAGAGGCCTCCCCGACCTCATTGGAAGGGAGGGTGTCGT
GGAGGGAGGGTGCCGTAGAGGGGGGCTTTGCTCTAAATATTATAAATGGG
GGGTACACTTTTTTTTTTTTTTTTTAATATCACTTATAGCCGATGGACCT
CATCATTACCATCCTGCCTGTGGTCACTAAGGATCTTCCCATCTCTCCCC
GGTTCACGCCTTACAATTTTTTTATCGCGATGCAAGTTCAGCACTCTTAC
AACTCGTCAACCAATGGTACAAACAGCTAGCCTCTGTATTTGAGTGATCG
GGCAAGTGTGCGTGTCAGCATAGCTTCAATAGGGCGATAGAGCAAGGAAC
TCTTTGGTTGGATAATCCGGTTACAAGAGTCCCTTCCCCCAATGTTGATG
TGCTGACAGCCTTCACAACTTGAGATGGCGGGGTACACTGTAGCTTAGGG
CTTAGGTCATGAAAAGCTACTATAAATATTAATACTTTAGTCATCCCAAG
CATGAAGCAAAATATTTACTTCGAAGTCTTAAAAATCCAGCTTACCCCTG
TTGGTCGACTTCGACTTTGTTAATCCACCACCTGTCTCACTCTCTTGGAC
CACATATTAATATTAATGTGTCTGCCAGGGAGTCGGGGAGAAGTGGTGGA
CTTACGTGAACGAGTTCTTCTCGGGGTGCCCACTTGCCGACAAACGTTTC
AGCGACGAGAACTGTGTGGCAAGTGCTATGAAAATCGCAGGTGAGTATAT
CCGAGGAAGCTCCTCTGTACTGTACTGTAATCTGGATCACAGTCTTACGG
AATAGTCTAGAGGGGCATTTTTTGTAACAGTTACCTCCCCCCCCTCCCCC
CCTAAAGTAAAATAAAGTAAAATAATATTTTTGTTAATGGGATTTTACCA
CAGCGTTTGGAGGATGGATGGGCCGATCGATGAGGGCCTGTGAGGCATAT
TGCAGAAAGCTAAACCGGCCCTACTCAATTCGGTCCATGGGTGCTGGAAT
AATTGGTCAACGCAGGAGATCGATCGTAGAAAAAGTATTTTTGCTCCCCA
ATTGTGTCCAACCCATCCTTTGCCTGGTCCCGCCCCCCTTATCCACGGCA
CGACACGACAATGCGCGCGGGTTAAACCTTTTTACGTTTCTATTGTATTT
TGCATTTTGTACGCCGGACCCTTCAGGAATTGACAAGGGCGCAGTGGACA
AGTGCATGGCTGATTCCGGGGGAACTTCCAAAGATACTGTAAACCGTATC
CTCGAGCAGGAGCTCGCCGAGAAGGTGCCCCTGCTTGTCTTGTCCTGTCC
TGTCCTGTCCTTCCTTGAAGCTTAAATCTTAAAGCCTATTCCTCCAAACG
TTGGCCTACAGCCGGTGTCTCTTACGCTAGCTGATGCCCTTCCTTACTCG
TGGAGGATAAAAGGCGGTTAAGTGTTGAGCGGATTAGGTCATTAGGTACA
TGTGCTCGTCCGGAGGGGGGGGGGGTGAAAACGCAGGTCGGTTGTCGTTG
CGTGTCACTCCCATAGCTCTTGACCGCGTCGCAGGCAAAGCCCCCGGAAC
CGATTCATATATATTGTTTTTTTCGTTTGACACTTGAGTGTATAAGGGAT
CTCGAAAGCGAGATTTTAGACCTCTACACATCCCTGCCGCTCTACCCAAA
GCCCTCTTTACACCCCCAATTCACTCCCCGCCTGTGGCGAGACAGCAATT
ACGATACGATGCGATACGAAACGAAACGAAATGCTTGTTCCACAGGATAA
AAAGTCTATCGTGATCGTGCCCACGGTCTACGTGAACAACGTGGCGGAGC
GTGGGGGCATCAGCACGGCGGCATTGCTCAGCACCATCTGTGCCGGGTAT
AAGCCCGGGACGGAGCCCGACGTGAGCCATGCCCTCGAGCCGTTCGCCGT
GCATGCCACAGTTTCGTCCTCCATCTTGTGCCGTCGTGCTTTATTCGACC
TTTATTCGACCTTTCTTCGACCTTTCTTTGATTCTTGCAACCGTTTACAT
TGGTTTGGATGACAGTTGGATGACAGTGGCGCACTCTCGCCAAGAGAAGG
GAATAAAGTACCTAGTAGCGAATAAAGTACCAGGCACAAGTAGGTGGTAG
GTGTTGAATGGTGAGAAGATAGTGAGCGAGACATGGCCCATAACCCAGCC
GACAGCAGGGGTTGGACGGGAATCGCGCCACCCCGTGGCGCATCGCCCCG
ACTAAGGAGGACGAGGGAGAATTGCTCTTGCATCTCTTGTTCCTCAAAGA
GTACTTGGGTAGTGTGAAAAGCCTCTTGAGACATCATGAAGGTAACTGTT
GGGCGGGTAGATAGCCCCATCATCAGCCATGGTTGGGGCTGCCAAAAGCT
CGTCACACCTTCCCCCCCTTTTTTTAATTGCTCCTTGTTCTTCCAAGGTC
TCTAGAAGTGTAAGATGCCCTCGCCTACCCGTGCAGCTGTTCCAATGCCG
TCTGCACCGCCTGGAAACCGTCTTAATGCGCCTATGGTGGATCGCCTGTG
CCAATGCCTCAACCTTGCTACGTTTTCAACAGGTCTGTCGATGCGCAGGA
CAGCAAACCAGTGCTCTCGTGGACGCATGCATGCACAACCGCAACACCAT
CAACACCGGCGGAAGGGGCACGTCGCTGGGTAATACCCTTTTCTGCTTTT
GGTCGTGGTCGGGGTTATGGCTGCGGTAGGTTACGCCCACTAT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10214:4577..16569+

>mRNA_A-nodosum_M_contig10214.2.5 ID=mRNA_A-nodosum_M_contig10214.2.5|Name=mRNA_A-nodosum_M_contig10214.2.5|organism=Ascophyllum nodosum dioecious|type=CDS|length=1251bp|location=Sequence derived from alignment at A-nodosum_M_contig10214:4577..16569+ (Ascophyllum nodosum dioecious)
ATGGCGGAGAGGCTCGTCCATGGCGGCGTGACGAAGGGGTCACAGAAAAC
GTGGACCCTCTGCAGTAGCGACGACGTCGTGGCGTTCAAGACGATTATGC
CGGAGGACAGCCCTTTCATTCTCATGGTGGACCGAGGGGACTGCACATTC
GTCAGCAAGGCACGACTAATAGTGCGCAGGGCGCAGCACCTCGGAGCTGC
GGGCGTGATCATCGCCGACAACACCTGTCTTTGCAGCGACGTGGATTCCA
AGATATGCACAAAATCACCAGACACCCTGTGTGAGCAAGTGGAGCCCATC
ATGGCGGACGACGGGTCGGGCGCGGATATCGCGATTCCCAGCTTTCTCAT
GAAAAAGAGGGACGCTGAAATGATCAAGACAACCTTGGCAAGTGGCCAGG
AGGTGCAGGCCGAGATGGCGTGGTCCTTGCCCGCCCCGGACGACCGAGTG
GAGTGGTCGCTGTGGACCAGCGCCGTCGACGCGTCAGCTGCGCTCTTCAA
GCGCGACTTCAAGGACGTGGTGAAAATGCTCGGGCGAAAAGCGCAGTTCA
CCCCCTACTACGTGATCTACGACGGAAAGTCGTACGGCTGCACCGCGACG
GGAGCGAACTGCAAGTCTCTGTGCACCAACCACGGCCGGTACTGCATGAC
CGATCCGGACTTCGACACCAACGAGGGCGTGTCGGGGTCGGATGTTGTGC
TGGAGTCCCTGCGGCAGAAATGCATCTGGAACCTTTACGGGGGCCCTTCG
GCATCCAAGATCGACCAGGGAGTCGGGGAGAAGTGGTGGACTTACGTGAA
CGAGTTCTTCTCGGGGTGCCCACTTGCCGACAAACGTTTCAGCGACGAGA
ACTGTGTGGCAAGTGCTATGAAAATCGCAGGAATTGACAAGGGCGCAGTG
GACAAGTGCATGGCTGATTCCGGGGGAACTTCCAAAGATACTGTAAACCG
TATCCTCGAGCAGGAGCTCGCCGAGAAGGATAAAAAGTCTATCGTGATCG
TGCCCACGGTCTACGTGAACAACGTGGCGGAGCGTGGGGGCATCAGCACG
GCGGCATTGCTCAGCACCATCTGTGCCGGGTATAAGCCCGGGACGGAGCC
CGACGTCTGTCGATGCGCAGGACAGCAAACCAGTGCTCTCGTGGACGCAT
GCATGCACAACCGCAACACCATCAACACCGGCGGAAGGGGCACGTCGCTG
GGTAATACCCTTTTCTGCTTTTGGTCGTGGTCGGGGTTATGGCTGCGGTA
G
back to top