mRNA_A-nodosum_M_contig1021.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1021.6.1
Unique NamemRNA_A-nodosum_M_contig1021.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 5.320e-32
Identity = 68/167 (40.72%), Postives = 97/167 (58.08%), Query Frame = 1
Query:    7 GVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHIFKKQ-----------RGSKEKICGPEKQPPVRRDYCRCMGGVDVTDQKAGTYLCPHRPMNYFWRRVFEHMVMQALVNGFILF 474
            G+ VAM  N+F+   L+ CLAT  IFAVGTLR NR GV      WA + +   E+G M   R   + I +WID ++ + +ST H+F  +             + EK+    +QP  R++Y + MGGVDV DQ+ G++   HRPM +FWRRVF+    QA+ NG++LF
Sbjct:  152 GITVAM-DNFFTGAPLLRCLATRDIFAVGTLRGNRIGVELANYLWAKEGMAATERGQMLTARSDELVIVKWIDSQEVYLMSTKHVFADEWEPLAYEKRAANNNGEKVSS--RQPLARKEYVKNMGGVDVADQRLGSHAHKHRPMTFFWRRVFDQKFAQAVSNGWLLF 315          
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.150e-27
Identity = 69/180 (38.33%), Postives = 98/180 (54.44%), Query Frame = 1
Query:    4 NGVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHIFKKQRGSKEKICGPE---------------------KQPPVRRDYCRCMGGVDVTDQKAGTYLCPHRPMNYFWRRVFEHMVMQALVNGFILFEK 480
            +GV +AM  NYF+SP L  CLA+H IFAVGT R++RT   G  A   S    +  +GDM F R G ++  QW D K  F +ST+H+ +  +G KE+  G +                     +QP +R DY   M GVD+ DQ+ G++   H+    FWRRV++  + QAL N F++F K
Sbjct:  488 SGVFIAM-DNYFTSPTLFECLASHDIFAVGTCRADRT--AGADAYLESLGRTIPNRGDMNFCRSGQVACVQWADSKDIFLISTIHVAQPAKG-KEEAGGIDHFKPLPLSLRAKGRNGEPLDLQQPYMRMDYVLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIFRK 663          
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5JDZ7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDZ7_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 4.350e-27
Identity = 65/169 (38.46%), Postives = 94/169 (55.62%), Query Frame = 1
Query:    4 NGVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHIF---------KKQRGSK---EKICGPEKQPPVRRDYCRCMGGVDVTDQKAGTYLCPHRPMNYFWRRVFEHMVMQALVNGFILF 474
            +GV VAM  N+F+   L+ CLAT  I+AVGTLR NRTGV      W+ +  K  E+  M   R   + I +WI  ++   +S  H+F         +++R +    EK+     QP  R+ Y + MGGVDV DQ+ G +   HRPM +FWRRVF+  +  A+ N ++LF
Sbjct:  178 SGVTVAM-DNFFTGAALLQCLATRDIYAVGTLRGNRTGVDLANYIWSREGTKATEREQMLKARSDELVIVKWIGSQEVHLMSAKHVFAAEWEPLTLERKRAADNNGEKVSS--SQPLARKKYVKNMGGVDVADQRLGAHAHTHRPMTFFWRRVFDQKLSHAVSNAWLLF 343          
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.840e-25
Identity = 58/148 (39.19%), Postives = 84/148 (56.76%), Query Frame = 1
Query:    4 NGVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHIFKKQ-----------RGSKEKICGPEKQPPVRRDYCRCMGGVDVTDQKAGTYLCPHRPMNYF 414
            +G+ VAM  N+F+   L+ CLAT  IFAVGTLR NRTGV      W  + +K  E+GDM   R   + I +WID ++ + +ST H+F+ +             + EK+    +QP  R++Y + MGGVDV DQ+   +   HRPM +F
Sbjct:  113 SGITVAM-DNFFTGASLVRCLATRDIFAVGTLRGNRTGVDLAKHLWDKEGLKATERGDMLTARSDELVIVKWIDSQEVYLMSTKHVFEDEWAPLAYERRAANNNGEKVSS--QQPLARKEYVKNMGGVDVADQRLSAHAHTHRPMTFF 257          
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5KMF5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF5_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.960e-25
Identity = 74/178 (41.57%), Postives = 90/178 (50.56%), Query Frame = 1
Query:    4 NGVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHI------------FK------KQRGSKEKICGPEK---QPPVRRDYCRCMGGVDVTDQKAGTYLCPHRPMNYFWRRVFEHMVMQALVNGFILF 474
            +GV +AM  NYF+SP L  CLA+H IFAVGT RS RT   G L    S        GDM F R G ++  QW D K+    STVHI            FK      K +G      G  K   QP +R DY + MGGVD  DQ+  ++   HR     WRRVF+  +MQ L N F+LF
Sbjct:  196 SGVFIAM-DNYFTSPTLFACLASHEIFAVGTCRSPRT--CGALPYIQSLERTTPNPGDMTFCRSGEMAFVQWRDSKEILLCSTVHIGETGEEGGDINHFKPVPLALKGKG----WAGKHKEHDQPVMRMDYVKYMGGVDRADQQNESHYHDHRSYTNHWRRVFDAKIMQMLTNNFLLF 366          
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5JC56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC56_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.230e-19
Identity = 61/157 (38.85%), Postives = 81/157 (51.59%), Query Frame = 1
Query:    4 NGVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHIFKKQRGSKEKICGPEKQPPVRRDYCRCMGGVDVTDQKAGTYLCPHRPMNYFWRRVFEHMVMQALVNGFILF 474
            +GV VAM  N+F+   L+  LAT  IFAV T R NRTGV      W+ + +KV E+G M  LR    S  +  D                  + EK+     QP  R+++ + MGGVDV DQ  G +   HRPM +FWRRVF+    QA+ N + LF
Sbjct:  225 SGVTVAM-DNFFTGAALLRYLATRDIFAVRTPRGNRTGVDLSNYIWSKEGMKVTERGQM--LRPARTSSKRAADH-----------------NGEKVSS--SQPLARKEHVKNMGGVDVADQWLGAHAHTHRPMTFFWRRVFDQKFSQAVSNAWFLF 359          
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5KCK7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.420e-15
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    4 NGVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHI 261
            +GV++AM  NYF+SP L  CLA+H IFAVGT RSNRT  GG +    S + +  E+G+M F R GN++  QW+D K+    S++HI
Sbjct:   61 SGVYIAM-DNYFTSPTLFECLASHDIFAVGTCRSNRT--GGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHI 143          
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 9.430e-15
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    4 NGVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHI 261
            +G ++AM  NYF SP L  CLA+H IFAVGT RSNRT  GG +    S + +  E+G+M F R GN++  QW+D K+    S++HI
Sbjct:  890 SGAYIAM-DNYFKSPTLFECLASHDIFAVGTCRSNRT--GGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHI 972          
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A3Q4HNC3_NEOBR (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4HNC3_NEOBR)

HSP 1 Score: 79.3 bits (194), Expect = 2.200e-14
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 1
Query:   13 HVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVH-IFKK---QRGSKEKICGPEKQPPVRR---DYCRCMGGVDVTDQKAGTYLCPHRPMNYFWRRVFEHMVMQALVNGFIL 471
            ++  V N+++SP L   L    I   GT+R NRTG      T  +   K AE+GD+ ++R G +   +W D ++    STVH  F     QR  KE      K  PV     DY + MGGVD++D   G Y   H+ M ++ + +F H +  A+VN F+L
Sbjct:  137 YILYVDNFYTSPTLFSDLYKKKISCCGTIRKNRTGFP---RTLKNDFPKKAERGDVRWIRKGELLFVKWTDTREVTMCSTVHKAFSGKTVQRKVKEAAGWTTKAVPVPDCVVDYNKNMGGVDLSDALIGYYTVLHKTMKWY-KTLFYHFLDIAVVNSFLL 292          
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5JVE2_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.890e-14
Identity = 55/136 (40.44%), Postives = 66/136 (48.53%), Query Frame = 1
Query:    4 NGVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHI------------FK--------KQRGSKEKICGPEKQPPVRRDYCRCMGG 351
            +GV +AM  NYF+SP L  CLA+H IFAV T RS RT   G L    S    +  +GDM F R G ++  QW D K+    STVHI            FK        K R  K K      QP +R DY + MGG
Sbjct:  169 SGVFIAMA-NYFTSPTLFACLASHDIFAVATCRSPRT--CGALPYMESLGHTIPNRGDMTFCRSGEMAFVQWRDSKEILLYSTVHIGETGGEGGGINHFKPVLLALKGKGRAGKHK---EHDQPVMRMDYVKYMGG 298          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQZ5_9PHAE5.320e-3240.72DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5LEE0_9PHAE1.150e-2738.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDZ7_9PHAE4.350e-2738.46DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KG44_9PHAE1.840e-2539.19DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5KMF5_9PHAE1.960e-2541.57DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JC56_9PHAE2.230e-1938.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCK7_9PHAE1.420e-1548.84DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ecto... [more]
A0A6H5JW40_9PHAE9.430e-1547.67HTH La-type RNA-binding domain-containing protein ... [more]
A0A3Q4HNC3_NEOBR2.200e-1434.38DDE_Tnp_1_7 domain-containing protein n=1 Tax=Neol... [more]
A0A6H5JVE2_9PHAE2.890e-1440.44DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1021contigA-nodosum_M_contig1021:218742..219512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog144197.XP_008282296.1
Preferred namePGBD4
PFAMsDDE_Tnp_1_7,Tnp_zf-ribbon_2
Model size480
Max annot lvl33208|Metazoa
Hectar predicted targeting categorysignal peptide
Exons2
Evalue1.63e-13
EggNOG OGs28PUT@1|root,2QWHD@2759|Eukaryota,38EA4@33154|Opisthokonta,3BMU4@33208|Metazoa,3CZSB@33213|Bilateria,48F19@7711|Chordata,49BW8@7742|Vertebrata,4A8SE@7898|Actinopterygii
DescriptionpiggyBac transposable element derived 4
Cds size459
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866385.9603531-UTR-A-nodosum_M_contig1021:218741..2187621680866385.9603531-UTR-A-nodosum_M_contig1021:218741..218762Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1021 218742..218762 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866385.972744-CDS-A-nodosum_M_contig1021:218762..2190071680866385.972744-CDS-A-nodosum_M_contig1021:218762..219007Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1021 218763..219007 +
1680866385.9819107-CDS-A-nodosum_M_contig1021:219298..2195121680866385.9819107-CDS-A-nodosum_M_contig1021:219298..219512Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1021 219299..219512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1021.6.1prot_A-nodosum_M_contig1021.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1021 218763..219512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1021.6.1

>prot_A-nodosum_M_contig1021.6.1 ID=prot_A-nodosum_M_contig1021.6.1|Name=mRNA_A-nodosum_M_contig1021.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=153bp
MVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEK
GDMAFLRWGNISITQWIDKKKFFFLSTVHIFKKQRGSKEKICGPEKQPPV
RRDYCRCMGGVDVTDQKAGTYLCPHRPMNYFWRRVFEHMVMQALVNGFIL
FEK
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mRNA from alignment at A-nodosum_M_contig1021:218742..219512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1021.6.1 ID=mRNA_A-nodosum_M_contig1021.6.1|Name=mRNA_A-nodosum_M_contig1021.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=771bp|location=Sequence derived from alignment at A-nodosum_M_contig1021:218742..219512+ (Ascophyllum nodosum dioecious)
GATAACGGGGTCCATGTTGCGATGGTGGGCAACTATTTTTCATCGCCAGT ACTCATGGGCTGCCTCGCGACTCATCTCATTTTTGCCGTCGGAACGTTGC GAAGTAATAGAACAGGTGTCGGTGGCCCTCTCGCCACGTGGGCTTCGAAA AATGTTAAGGTGGCGGAAAAGGGTGATATGGCGTTCTTGCGCTGGGGCAA CATATCTATTACACAATGGATCGACAAGAAGAAGTTTTTTTTTCTTTCGA CCGTTCATATCTTTAAGTCCGACACAGAGCCTCAGGACTACCCGTGAGTA CCAATAGCGTTCGGTCTTTTGTTGTATACTCCGAGTTGGCCTAGTCTTAC TTGGTAGCCGCAAGCATAGATACCTTGTCTTGTCCATTTACCGACAGTTC GTCCGAAAACTGCATGCTATTGTAGGTGATGTGAATATACATTTGGTAAC GATTTACGGACGCGTCATTGACCCTTCAATATTTGGCGAATGCAGCCATA ATTACTCTGCACGCTCCACTCTCTGCCTCCTACGATGTAACTATTGCTTG GCAGGAGGAAACAGAGAGGGAGTAAGGAGAAGATATGCGGACCAGAAAAG CAGCCTCCCGTTCGGCGAGACTATTGCCGGTGCATGGGTGGGGTAGACGT CACCGACCAGAAAGCGGGGACGTATCTTTGTCCCCACCGCCCTATGAACT ACTTTTGGAGGCGTGTTTTCGAGCACATGGTCATGCAAGCGCTCGTGAAT GGTTTCATTCTGTTTGAAAAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1021:218742..219512+

>mRNA_A-nodosum_M_contig1021.6.1 ID=mRNA_A-nodosum_M_contig1021.6.1|Name=mRNA_A-nodosum_M_contig1021.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=459bp|location=Sequence derived from alignment at A-nodosum_M_contig1021:218742..219512+ (Ascophyllum nodosum dioecious)
ATGGTGGGCAACTATTTTTCATCGCCAGTACTCATGGGCTGCCTCGCGAC
TCATCTCATTTTTGCCGTCGGAACGTTGCGAAGTAATAGAACAGGTGTCG
GTGGCCCTCTCGCCACGTGGGCTTCGAAAAATGTTAAGGTGGCGGAAAAG
GGTGATATGGCGTTCTTGCGCTGGGGCAACATATCTATTACACAATGGAT
CGACAAGAAGAAGTTTTTTTTTCTTTCGACCGTTCATATCTTTAAGAAAC
AGAGAGGGAGTAAGGAGAAGATATGCGGACCAGAAAAGCAGCCTCCCGTT
CGGCGAGACTATTGCCGGTGCATGGGTGGGGTAGACGTCACCGACCAGAA
AGCGGGGACGTATCTTTGTCCCCACCGCCCTATGAACTACTTTTGGAGGC
GTGTTTTCGAGCACATGGTCATGCAAGCGCTCGTGAATGGTTTCATTCTG
TTTGAAAAA
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