mRNA_A-nodosum_M_contig1020.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1020.12.1
Unique NamemRNA_A-nodosum_M_contig1020.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1020.12.1 vs. uniprot
Match: D7G749_ECTSI (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G749_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 1.620e-85
Identity = 121/134 (90.30%), Postives = 130/134 (97.01%), Query Frame = 1
Query:    1 QRYSGLKDTITQYIRKDDNILMVGCGNSRLSEDMFDEGYTTITNIDVSRVVIEQMIARYRDKPALMWQAMNVCTLEYPDESFNSVIDKGTLDSVLCGEGSTANVAKMCMEISRVLKPNGVYFVCSYGVPDNRLQ 402
            QRYSGLKD I+QY+RKDDNILMVGCGNSRLSEDMFD+G+TT+TNIDVSRVV+EQMIARYRDKPALMW  MNVC L+YPDESFN+VIDKGTLDSVLCGEGSTANVAKMCMEISRVLKPNGVYF+CSYGVPDNRLQ
Sbjct:   27 QRYSGLKDWISQYVRKDDNILMVGCGNSRLSEDMFDDGFTTLTNIDVSRVVVEQMIARYRDKPALMWSMMNVCALDYPDESFNAVIDKGTLDSVLCGEGSTANVAKMCMEISRVLKPNGVYFICSYGVPDNRLQ 160          
BLAST of mRNA_A-nodosum_M_contig1020.12.1 vs. uniprot
Match: A0A7S2V7W5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7W5_9STRA)

HSP 1 Score: 223 bits (569), Expect = 5.130e-72
Identity = 105/134 (78.36%), Postives = 121/134 (90.30%), Query Frame = 1
Query:    1 QRYSGLKDTITQYIRKDDNILMVGCGNSRLSEDMFDEGYTTITNIDVSRVVIEQMIARYRDKPALMWQAMNVCTLEYPDESFNSVIDKGTLDSVLCGEGSTANVAKMCMEISRVLKPNGVYFVCSYGVPDNRLQ 402
            QRYSG+KD I QYI K+DNILM G GNSRLSE+MFD+GYTTITNID+SRVVIEQMI R RDK AL WQ MNV +LE+PDESF++VIDKGT+DS+LCGEGSTAN AKMC+E+SRVLKPNGV+F+ SYGVP+NRLQ
Sbjct:   25 QRYSGVKDLIAQYIHKEDNILMAGAGNSRLSEEMFDDGYTTITNIDISRVVIEQMIERCRDKAALTWQQMNVASLEFPDESFDAVIDKGTMDSILCGEGSTANCAKMCLEVSRVLKPNGVFFIVSYGVPENRLQ 158          
BLAST of mRNA_A-nodosum_M_contig1020.12.1 vs. uniprot
Match: A0A6U1K5P8_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1K5P8_9STRA)

HSP 1 Score: 208 bits (530), Expect = 4.360e-66
Identity = 95/144 (65.97%), Postives = 124/144 (86.11%), Query Frame = 1
Query:    1 QRYSGLKDTITQYIRKDDNILMVGCGNSRLSEDMFDEGYTTITNIDVSRVVIEQMIARYRDKPALMWQAMNVCTLEYPDESFNSVIDKGTLDSVLCGEGSTANVAKMCMEISRVLKPNGVYFVCSYGVPDNRLQVRTREVTSIT 432
            QRYSG+++ + +Y++KDD +LM GCGNSRLSEDMF++G+  I+N+D+SRVVI+QM  +Y+DKPAL +Q MNVC+LE+PDESF++VI KGT+D++LCGEGSTANVAKMCME+SRVLKP+G+ FV SYGVPDNR+Q    E  S T
Sbjct:   25 QRYSGIQELLQKYVKKDDAVLMAGCGNSRLSEDMFEDGFANISNVDISRVVIDQMGDKYKDKPALTFQQMNVCSLEFPDESFDAVIVKGTMDAILCGEGSTANVAKMCMEVSRVLKPSGILFVVSYGVPDNRMQYLENEDYSWT 168          
BLAST of mRNA_A-nodosum_M_contig1020.12.1 vs. uniprot
Match: A0A835ZP38_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZP38_9STRA)

HSP 1 Score: 209 bits (533), Expect = 6.940e-66
Identity = 93/134 (69.40%), Postives = 119/134 (88.81%), Query Frame = 1
Query:    1 QRYSGLKDTITQYIRKDDNILMVGCGNSRLSEDMFDEGYTTITNIDVSRVVIEQMIARYRDKPALMWQAMNVCTLEYPDESFNSVIDKGTLDSVLCGEGSTANVAKMCMEISRVLKPNGVYFVCSYGVPDNRLQ 402
            QRYSG+KD +   ++ +DN+LM+GCGNSRLSEDM ++G+T+ITNID+SRVVI+QMI R++DKPAL+WQ MN   LEYPDESF++ +DKGTLDS++CGEG++ANVAKMCME+SRVLKPNGVY V SYG PD+RL+
Sbjct:   72 QRYSGIKDLVAAQMKHEDNVLMLGCGNSRLSEDMLEDGFTSITNIDISRVVIDQMIERHKDKPALVWQRMNAMALEYPDESFDAAVDKGTLDSLMCGEGASANVAKMCMEVSRVLKPNGVYLVISYGAPDSRLK 205          
BLAST of mRNA_A-nodosum_M_contig1020.12.1 vs. uniprot
Match: A0A7S2GCN9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCN9_9STRA)

HSP 1 Score: 207 bits (528), Expect = 8.780e-66
Identity = 97/144 (67.36%), Postives = 121/144 (84.03%), Query Frame = 1
Query:    1 QRYSGLKDTITQYIRKDDNILMVGCGNSRLSEDMFDEGYTTITNIDVSRVVIEQMIARYRDKPALMWQAMNVCTLEYPDESFNSVIDKGTLDSVLCGEGSTANVAKMCMEISRVLKPNGVYFVCSYGVPDNRLQVRTREVTSIT 432
            QRYSGL + + +Y++KDD ILM G GNSRLSEDM+++GY TITNID+SRVV++QMI RY+DK AL +Q MNVC+LE+PDESF++V  KGT+D++LCGEGSTANVAKMC E+SRVLK +GV+F+ SYGVPDNRLQ    E  S T
Sbjct:   25 QRYSGLSELLNKYVKKDDTILMAGAGNSRLSEDMYEDGYQTITNIDISRVVVDQMIDRYKDKAALTYQQMNVCSLEFPDESFDAVTAKGTMDAILCGEGSTANVAKMCQEVSRVLKAHGVFFIVSYGVPDNRLQYLENEDYSWT 168          
BLAST of mRNA_A-nodosum_M_contig1020.12.1 vs. uniprot
Match: A0A7S2AN98_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AN98_9STRA)

HSP 1 Score: 206 bits (523), Expect = 5.050e-65
Identity = 94/139 (67.63%), Postives = 119/139 (85.61%), Query Frame = 1
Query:    1 QRYSGLKDTITQYIRKDDNILMVGCGNSRLSEDMFDEGYTTITNIDVSRVVIEQMIARYRDKPALMWQAMNVCTLEYPDESFNSVIDKGTLDSVLCGEGSTANVAKMCMEISRVLKPNGVYFVCSYGVPDNRLQVRTRE 417
            QRYSG+ +TI +YI+KDD ILM G GNSRLSEDM+++GY TITNID+SRVV++QM+ +YRDK  L +Q MNVC+LE+PDESF++V+ KGT+D++LCGEGSTANVAKMC E+SRVLK +GV+ + SYGVPDNRLQ    E
Sbjct:   25 QRYSGMAETIQKYIKKDDQILMAGAGNSRLSEDMYEDGYNTITNIDISRVVVDQMVDKYRDKTPLPYQQMNVCSLEFPDESFDAVVAKGTMDAILCGEGSTANVAKMCQEVSRVLKVHGVFIIVSYGVPDNRLQYLDNE 163          
BLAST of mRNA_A-nodosum_M_contig1020.12.1 vs. uniprot
Match: A0A7S3M8V2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8V2_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.490e-64
Identity = 95/139 (68.35%), Postives = 116/139 (83.45%), Query Frame = 1
Query:    1 QRYSGLKDTITQYIRKDDNILMVGCGNSRLSEDMFDEGYTTITNIDVSRVVIEQMIARYRDKPALMWQAMNVCTLEYPDESFNSVIDKGTLDSVLCGEGSTANVAKMCMEISRVLKPNGVYFVCSYGVPDNRLQVRTRE 417
            QRYSG++D I QY++++D ILM G GNSRL+EDMF++GY+TITNIDVSRVVI+Q I RY+DKP L WQ MNV  L++PDE+F+ VI K TLD+VLCGEGSTANVAK C E+SRVLKP GV+F+ SYGVPDNRL    +E
Sbjct:   25 QRYSGIRDFINQYVKREDVILMAGAGNSRLTEDMFEDGYSTITNIDVSRVVIDQQIERYKDKPTLQWQQMNVTALDFPDETFDVVIAKATLDAVLCGEGSTANVAKFCSEVSRVLKPTGVFFIVSYGVPDNRLNYLEKE 163          
BLAST of mRNA_A-nodosum_M_contig1020.12.1 vs. uniprot
Match: A0A7R9UCD5_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCD5_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.640e-62
Identity = 93/139 (66.91%), Postives = 117/139 (84.17%), Query Frame = 1
Query:    1 QRYSGLKDTITQYIRKDDNILMVGCGNSRLSEDMFDEGYTTITNIDVSRVVIEQMIARYRDKPALMWQAMNVCTLEYPDESFNSVIDKGTLDSVLCGEGSTANVAKMCMEISRVLKPNGVYFVCSYGVPDNRLQVRTRE 417
            QRYSGLKDT+ Q+++K+D+ILM  CG+SRL+EDM+++G+T I NID S+VVIEQM  R  DKPAL WQ MNV  LE+PDESF++VI K T+D++LCGEGSTANVAKMC E+SRVLKP+GV+F+ SYGVPDNRL    +E
Sbjct:  108 QRYSGLKDTMDQFMKKEDSILMASCGSSRLTEDMYEDGFTNIVNIDASKVVIEQMTQRCEDKPALTWQVMNVMALEFPDESFDAVIAKATMDAILCGEGSTANVAKMCTEVSRVLKPSGVFFIVSYGVPDNRLNYLEQE 246          
BLAST of mRNA_A-nodosum_M_contig1020.12.1 vs. uniprot
Match: F0Y4J9_AURAN (Methyltransf_11 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4J9_AURAN)

HSP 1 Score: 196 bits (499), Expect = 6.850e-62
Identity = 92/139 (66.19%), Postives = 117/139 (84.17%), Query Frame = 1
Query:    1 QRYSGLKDTITQYIRKDDNILMVGCGNSRLSEDMFDEGYTTITNIDVSRVVIEQMIARYRDKPALMWQAMNVCTLEYPDESFNSVIDKGTLDSVLCGEGSTANVAKMCMEISRVLKPNGVYFVCSYGVPDNRLQVRTRE 417
            QRYSG++      + +DD+ILM GCGNSRLSEDMF++GY  ++NID+SRV I+QM  +Y+DKPAL +Q MNVC+LE+PDESF++VI KG +D++LCGEGSTANVAKMCME+SRVLKPNG++FV SYGVPDNR+Q    E
Sbjct:   21 QRYSGIQARRGAGMERDDSILMAGCGNSRLSEDMFEDGYANLSNIDISRV-IDQMSEKYKDKPALSFQQMNVCSLEFPDESFDAVIAKGVMDAILCGEGSTANVAKMCMEVSRVLKPNGIFFVVSYGVPDNRMQYLENE 158          
BLAST of mRNA_A-nodosum_M_contig1020.12.1 vs. uniprot
Match: A0A7S3K5J8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K5J8_9STRA)

HSP 1 Score: 197 bits (502), Expect = 8.890e-62
Identity = 93/140 (66.43%), Postives = 117/140 (83.57%), Query Frame = 1
Query:    1 QRYSGLKDTITQYIRKDDNILMVGCGNSRLSEDMFDEGYTTITNIDVSRVVIEQMIARYRDKP-ALMWQAMNVCTLEYPDESFNSVIDKGTLDSVLCGEGSTANVAKMCMEISRVLKPNGVYFVCSYGVPDNRLQVRTRE 417
            QRYSGL + +++YI++DD ILM GCGNSR++EDM ++GYT+ITNIDVSRVVI+QM  +Y+DK    ++Q MNVC LE+PDESF+++I KG +D++LCGEGSTANVAKMCME SRVLKPNGV F+ SYG PDNRLQ    E
Sbjct:   25 QRYSGLSEIMSKYIKRDDAILMAGCGNSRMTEDMIEDGYTSITNIDVSRVVIDQMKEKYKDKKDTFIYQIMNVCGLEFPDESFDAIIAKGVMDAILCGEGSTANVAKMCMEASRVLKPNGVLFIVSYGFPDNRLQYLDNE 164          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1020.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G749_ECTSI1.620e-8590.30Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A7S2V7W5_9STRA5.130e-7278.36Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U1K5P8_9STRA4.360e-6665.97Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A835ZP38_9STRA6.940e-6669.40S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S2GCN9_9STRA8.780e-6667.36Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2AN98_9STRA5.050e-6567.63Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3M8V2_9STRA1.490e-6468.35Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7R9UCD5_9STRA1.640e-6266.91Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
F0Y4J9_AURAN6.850e-6266.19Methyltransf_11 domain-containing protein (Fragmen... [more]
A0A7S3K5J8_9STRA8.890e-6266.43Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1020contigA-nodosum_M_contig1020:134199..135083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G749
PFAMsMethyltransf_11,Methyltransf_25,Methyltransf_31
Model size435
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.66e-86
EggNOG OGsKOG2352@1|root,KOG2352@2759|Eukaryota
Descriptionmethyltransferase activity
Cds size435
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866385.5087042-CDS-A-nodosum_M_contig1020:134198..1343771680866385.5087042-CDS-A-nodosum_M_contig1020:134198..134377Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1020 134199..134377 +
1680866385.5195682-CDS-A-nodosum_M_contig1020:134827..1350831680866385.5195682-CDS-A-nodosum_M_contig1020:134827..135083Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1020 134828..135083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1020.12.1prot_A-nodosum_M_contig1020.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1020 134199..135083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1020.12.1

>prot_A-nodosum_M_contig1020.12.1 ID=prot_A-nodosum_M_contig1020.12.1|Name=mRNA_A-nodosum_M_contig1020.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=145bp
QRYSGLKDTITQYIRKDDNILMVGCGNSRLSEDMFDEGYTTITNIDVSRV
VIEQMIARYRDKPALMWQAMNVCTLEYPDESFNSVIDKGTLDSVLCGEGS
TANVAKMCMEISRVLKPNGVYFVCSYGVPDNRLQVRTREVTSIT*
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mRNA from alignment at A-nodosum_M_contig1020:134199..135083+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1020.12.1 ID=mRNA_A-nodosum_M_contig1020.12.1|Name=mRNA_A-nodosum_M_contig1020.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=885bp|location=Sequence derived from alignment at A-nodosum_M_contig1020:134199..135083+ (Ascophyllum nodosum dioecious)
CAGCGCTACTCTGGCCTGAAGGACACAATTACCCAGTACATACGTAAGGA TGACAACATCCTCATGGTGGGATGTGGTAACTCGAGGTTGAGCGAGGACA TGTTCGACGAGGGATACACCACGATCACCAACATCGATGTGTCGAGGGTG GTCATTGAACAGATGATCGCGAGATACAGGTGAGTCGCTGCTCCTAATGT TTTGTGGTCCGCATTTCAGCTCCAAGTACTGGTGTACCAGTGCTCGCCTG GGGCTCGATGCAACGCTAGATTTGATGGATGACAGGAAGATTTTGCTTGA AAACTCTGTGGAGATTCTCGCGCCCCTCGAGAACTCGGCCATTGTGTCAT CCATTCGTGATGGATACGGCTTTCTTTAAAACTGTGAAAGTCTGCGAAGT CTACGTCTTCAAGCATCTACGCCTCGTTTTCAGAAAGAAATGATGTTCCG AGCCTCACGTGTTGAGTTGTTTACAGCAGTACATGTCGCCCGTGGTGGAA ATATTTTTGTTCACATTTTACGATTGAACGAGGCATGATGCTCGAGGGGA CGCTGGCCCCGGTGTGGCCCCACCAAAAACATGACTGGTTACCGCTGCAG CGTTCCTTTATGTGTTGCGGTTGTTTCAGGGACAAACCGGCTCTGATGTG GCAGGCGATGAACGTGTGCACGCTCGAGTACCCCGATGAATCTTTCAACT CAGTCATCGATAAGGGTACCCTAGACTCTGTCCTTTGCGGCGAGGGCTCG ACGGCAAACGTTGCCAAGATGTGCATGGAGATCTCACGGGTGCTCAAGCC CAACGGCGTGTATTTCGTCTGCTCTTACGGGGTGCCTGATAACCGTCTTC AGGTGCGCACGAGAGAAGTGACATCGATAACATAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1020:134199..135083+

>mRNA_A-nodosum_M_contig1020.12.1 ID=mRNA_A-nodosum_M_contig1020.12.1|Name=mRNA_A-nodosum_M_contig1020.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=435bp|location=Sequence derived from alignment at A-nodosum_M_contig1020:134199..135083+ (Ascophyllum nodosum dioecious)
CAGCGCTACTCTGGCCTGAAGGACACAATTACCCAGTACATACGTAAGGA
TGACAACATCCTCATGGTGGGATGTGGTAACTCGAGGTTGAGCGAGGACA
TGTTCGACGAGGGATACACCACGATCACCAACATCGATGTGTCGAGGGTG
GTCATTGAACAGATGATCGCGAGATACAGGGACAAACCGGCTCTGATGTG
GCAGGCGATGAACGTGTGCACGCTCGAGTACCCCGATGAATCTTTCAACT
CAGTCATCGATAAGGGTACCCTAGACTCTGTCCTTTGCGGCGAGGGCTCG
ACGGCAAACGTTGCCAAGATGTGCATGGAGATCTCACGGGTGCTCAAGCC
CAACGGCGTGTATTTCGTCTGCTCTTACGGGGTGCCTGATAACCGTCTTC
AGGTGCGCACGAGAGAAGTGACATCGATAACATAG
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