mRNA_A-nodosum_M_contig102.31.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig102.31.1
Unique NamemRNA_A-nodosum_M_contig102.31.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig102.31.1 vs. uniprot
Match: A0A6H5KH57_9PHAE (Kinesin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH57_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 3.150e-44
Identity = 85/139 (61.15%), Postives = 104/139 (74.82%), Query Frame = 1
Query:    1 QTTPGGNPLPDNKGKTFFRFDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMK--------GGEGHDAPGIMQMAARDLFDLIEHTPDRMFIVRASYIEISEESVNDLLKPNSSNLQVLCDTRR 393
            QT+P GNPLPD KG TFF +DRIFDEDS+TQ VY+ VA+EIVHSV RG+NGTIFAYGQ SSGKTFTM+        GG     PGI+Q+A RDLF LI+   DRMF++R SY+EI +E + DLL P ++N+QV  D R+
Sbjct:   58 QTSPEGNPLPDGKG-TFFTYDRIFDEDSSTQAVYDGVAREIVHSVSRGMNGTIFAYGQTSSGKTFTMQARGDAACWGGGSEANPGIVQIATRDLFRLIQEKTDRMFLMRVSYLEIYQEEIRDLLNPENTNMQVREDPRK 195          
BLAST of mRNA_A-nodosum_M_contig102.31.1 vs. uniprot
Match: A0A8J9SCD5_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SCD5_PHATR)

HSP 1 Score: 144 bits (364), Expect = 2.840e-40
Identity = 79/141 (56.03%), Postives = 100/141 (70.92%), Query Frame = 1
Query:    1 QTTPGGNPLPDN-KGKTFFRFDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKGG-------EGHDAPGIMQMAARDLFDLIEHTPDRMFIVRASYIEISEESVNDLLK--PNSSNLQVLCDTRR 393
            QTTP G PLP+   G+TFF FD+ F E STTQ+VY+ VA+ IV+SVV GLNGTIFAYGQ SSGKTFTM+G         G    G++ MAA+D+F+ IE++PDR+F+VRAS++EI  E V DLL   P++  L V  D RR
Sbjct:   30 QTTPDGKPLPERVTGRTFFTFDKAFSESSTTQQVYDDVAKNIVNSVVTGLNGTIFAYGQTSSGKTFTMQGSGTIQEGSNGSGGGGVVHMAAQDIFNRIENSPDRIFLVRASFLEIYNEEVRDLLADDPHTRTLAVREDPRR 170          
BLAST of mRNA_A-nodosum_M_contig102.31.1 vs. uniprot
Match: B7G7S2_PHATC (Kinesin-like protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G7S2_PHATC)

HSP 1 Score: 144 bits (364), Expect = 2.440e-39
Identity = 79/141 (56.03%), Postives = 100/141 (70.92%), Query Frame = 1
Query:    1 QTTPGGNPLPDN-KGKTFFRFDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKGG-------EGHDAPGIMQMAARDLFDLIEHTPDRMFIVRASYIEISEESVNDLLK--PNSSNLQVLCDTRR 393
            QTTP G PLP+   G+TFF FD+ F E STTQ+VY+ VA+ IV+SVV GLNGTIFAYGQ SSGKTFTM+G         G    G++ MAA+D+F+ IE++PDR+F+VRAS++EI  E V DLL   P++  L V  D RR
Sbjct:   30 QTTPDGKPLPERVTGRTFFTFDKAFSESSTTQQVYDDVAKNIVNSVVTGLNGTIFAYGQTSSGKTFTMQGSGTIQEGSNGSGGGGVVHMAAQDIFNRIENSPDRIFLVRASFLEIYNEEVRDLLADDPHTRTLAVREDPRR 170          
BLAST of mRNA_A-nodosum_M_contig102.31.1 vs. uniprot
Match: A0A835YW03_9STRA (Kinesin-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW03_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.740e-38
Identity = 71/131 (54.20%), Postives = 90/131 (68.70%), Query Frame = 1
Query:    1 QTTPGGNPLPDNKGKTFFRFDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKGGEGHDAPGIMQMAARDLFDLIEHTPDRMFIVRASYIEISEESVNDLLKPNSSNLQVLCDTRR 393
            QT+  G PLPD KG TFF +DRIFDE  +  EVY   A+++V SVVRGLNGTIFAYGQ SSGKTFTM+G  G +  GI   A  D+F +I +T  R F++R SY+EI  E + DLL P++  LQ+  D R+
Sbjct:   43 QTSLSGQPLPDAKGSTFFTYDRIFDEGCSNDEVYAGAARDLVQSVVRGLNGTIFAYGQTSSGKTFTMQGARGGEVQGIAHKATADIFAVIGNTAQRDFLLRVSYLEIYNEEIRDLLNPDTPKLQLREDPRK 173          
BLAST of mRNA_A-nodosum_M_contig102.31.1 vs. uniprot
Match: A0A7S3Q0F6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0F6_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.140e-35
Identity = 71/134 (52.99%), Postives = 90/134 (67.16%), Query Frame = 1
Query:    1 QTTPGGNPLPDN-KGKTFFRFDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKGGE-------GHDAPGIMQMAARDLFDLIEHTPDRMFIVRASYIEISEESVNDLLKPNSSNLQVL 378
            QTT  G PLP+   G+TFF FD+ F E +TT+EVY  +AQ IV SVV GLNGTIFAYGQ SSGKT TM+G         G +  G++ MAARD+F  I + P+R+F++R S+IEI  E V DLL   + N +VL
Sbjct:   45 QTTNEGKPLPERITGRTFFTFDKTFGEKTTTREVYSDIAQGIVESVVNGLNGTIFAYGQTSSGKTHTMQGSGTIEAGSVGDNGAGVVHMAARDIFSQINNDPERVFLLRVSFIEIYNEEVRDLLVSGNGNDKVL 178          
BLAST of mRNA_A-nodosum_M_contig102.31.1 vs. uniprot
Match: A0A7S2UFQ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UFQ7_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.670e-34
Identity = 66/123 (53.66%), Postives = 85/123 (69.11%), Query Frame = 1
Query:    1 QTTPGGNPLPDNK-GKTFFRFDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKG------GEGHDAPGIMQMAARDLFDLIEHTPDRMFIVRASYIEISEESVNDLL 348
            Q+TP G PLP+   G+ FF FDR+F EDS++++VY+++AQ IV SVV GLNGTIFAYGQ SSGKT+TM+G      G      G++ MAA D+F  I   P R F++R S+IEI  E V DLL
Sbjct:   10 QSTPDGKPLPERATGRNFFTFDRVFGEDSSSKQVYDNIAQGIVKSVVTGLNGTIFAYGQTSSGKTYTMQGAGSIQEGSNGGGGGVVHMAAHDIFSHIASDPSRDFLIRVSFIEIYNEEVRDLL 132          
BLAST of mRNA_A-nodosum_M_contig102.31.1 vs. uniprot
Match: A0A7S4KCC0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCC0_9STRA)

HSP 1 Score: 124 bits (312), Expect = 7.620e-34
Identity = 68/124 (54.84%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    1 QTTPGGNPLPDN-KGKTFFRFDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKG-------GEGHDAPGIMQMAARDLFDLIEHTPDRMFIVRASYIEISEESVNDLL 348
            QTT  G PLP+   G++FF FD+ + E STT  VY+ VA+ IV SVV GLNGTIFAYGQ SSGKT+TM+G       G      G++ MAARD+F  I  TPDR F++R S+IEI  E V DLL
Sbjct:   18 QTTSSGQPLPERVNGRSFFTFDQTYSEKSTTVHVYDGVAKGIVQSVVGGLNGTIFAYGQTSSGKTYTMQGSGTIQDGGSSGATGGVVHMAARDIFSHISTTPDRAFLLRVSFIEIYNEEVRDLL 141          
BLAST of mRNA_A-nodosum_M_contig102.31.1 vs. uniprot
Match: W7TRS8_9STRA (Kinesin motor domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRS8_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.370e-33
Identity = 65/131 (49.62%), Postives = 92/131 (70.23%), Query Frame = 1
Query:    4 TTPGGNPLPDNK-GKTFFRFDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKGGEGHDAPGIMQMAARDLFDLIEHTPDRMFIVRASYIEISEESVNDLLKPNSSNLQVLCDTRR 393
            T P GNPLPD   G +FF +D++F E+S+T +VY ++ + IV SV++G NGTIFAYGQ SSGKT+TM G E     G++ +AARD+F LI  T DR F++R S++EI  E++ DLL P + +L +  D R+
Sbjct:   49 TGPDGNPLPDRSPGLSFFTYDKVFSENSSTSDVYHAIGRPIVSSVLQGFNGTIFAYGQTSSGKTYTMVGDETGGEEGVLHLAARDIFRLISETNDRDFLLRVSFVEIYNENIRDLLDPETPSLSIREDPRK 179          
BLAST of mRNA_A-nodosum_M_contig102.31.1 vs. uniprot
Match: A0A1Z5JZV7_FISSO (Centromeric protein E n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZV7_FISSO)

HSP 1 Score: 126 bits (316), Expect = 4.960e-31
Identity = 66/138 (47.83%), Postives = 93/138 (67.39%), Query Frame = 1
Query:    1 QTTPGGNPLPDN-KGKTFFRFDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKG------GEGHDAPGIMQMAARDLFDLIEHTPDRMFIVRASYIEISEESVNDLLKPNSSNLQVLCDTRR 393
            Q TP G PL +   G+TFF +D+ F E +TT++VY ++A+EIV S + G+NGT+FAYGQ SSGKTFTM+G      G   +  GI+ MAA D+F  I + P+R+F+VRAS++EI  E V DLL  ++  + +  D RR
Sbjct:   84 QMTPDGQPLSERVTGRTFFTYDKAFPETATTRDVYNAMAKEIVESAITGVNGTVFAYGQTSSGKTFTMQGCGTIEEGLNGNGGGIVHMAAADIFQNIANQPNRVFLVRASFLEIYNEDVRDLLSSDNKTIPIREDPRR 221          
BLAST of mRNA_A-nodosum_M_contig102.31.1 vs. uniprot
Match: A0A7S1B5C0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B5C0_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.760e-31
Identity = 63/128 (49.22%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 QTTPGGNPLPDNK---GKTFFRFDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKGGEGHDAP----GIMQMAARDLFDLIEHTPDRMFIVRASYIEISEESVNDLLKPNSS 363
            QT   G PLP+ +   G+  F FDRIF E+ TT+EVY+     IV S + G+NGTIFAYGQ SSGKT+TM+G  G  A     GI+QMAA ++F +  ++ DR+F+ +AS++EI  E V DLL P  S
Sbjct:    8 QTKLTGKPLPEKEKVSGRNLFTFDRIFGENCTTREVYDEAVDGIVRSAMNGINGTIFAYGQTSSGKTYTMQGELGGSAKTEREGIIQMAAAEIFSIRSNSTDRIFLTKASFVEIYNEEVYDLLVPGKS 135          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig102.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KH57_9PHAE3.150e-4461.15Kinesin motor domain-containing protein n=2 Tax=Ec... [more]
A0A8J9SCD5_PHATR2.840e-4056.03Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
B7G7S2_PHATC2.440e-3956.03Kinesin-like protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A835YW03_9STRA1.740e-3854.20Kinesin-like protein (Fragment) n=1 Tax=Tribonema ... [more]
A0A7S3Q0F6_9STRA1.140e-3552.99Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A7S2UFQ7_9STRA2.670e-3453.66Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S4KCC0_9STRA7.620e-3454.84Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
W7TRS8_9STRA1.370e-3349.62Kinesin motor domain-containing protein n=2 Tax=Mo... [more]
A0A1Z5JZV7_FISSO4.960e-3147.83Centromeric protein E n=2 Tax=Fistulifera solaris ... [more]
A0A7S1B5C0_9STRA5.760e-3149.22Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig102contigA-nodosum_M_contig102:159057..159455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FIN0
PFAMsKinesin
Model size399
Max annot lvl2759|Eukaryota
KEGG koko:K11498
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005856,GO:0005871,GO:0005875,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022607,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043515,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044446,GO:0044464,GO:0044877,GO:0048285,GO:0051225,GO:0070925,GO:0071840,GO:0090307,GO:0098687,GO:0140014,GO:1902850,GO:1903047
Exons1
Evalue1.25e-46
EggNOG OGsCOG5059@1|root,KOG0242@2759|Eukaryota
Descriptionmicrotubule motor activity
Cds size399
COG categoryZ
BRITEko00000,ko01009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866381.213689-CDS-A-nodosum_M_contig102:159056..1594551680866381.213689-CDS-A-nodosum_M_contig102:159056..159455Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 159057..159455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig102.31.1prot_A-nodosum_M_contig102.31.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig102 159057..159455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig102.31.1

>prot_A-nodosum_M_contig102.31.1 ID=prot_A-nodosum_M_contig102.31.1|Name=mRNA_A-nodosum_M_contig102.31.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=133bp
QTTPGGNPLPDNKGKTFFRFDRIFDEDSTTQEVYESVAQEIVHSVVRGLN
GTIFAYGQPSSGKTFTMKGGEGHDAPGIMQMAARDLFDLIEHTPDRMFIV
RASYIEISEESVNDLLKPNSSNLQVLCDTRRI*
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mRNA from alignment at A-nodosum_M_contig102:159057..159455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig102.31.1 ID=mRNA_A-nodosum_M_contig102.31.1|Name=mRNA_A-nodosum_M_contig102.31.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at A-nodosum_M_contig102:159057..159455+ (Ascophyllum nodosum dioecious)
CAGACAACTCCGGGCGGTAATCCTTTACCCGATAACAAGGGCAAAACGTT CTTCAGATTCGATCGCATTTTCGACGAAGACAGCACCACTCAAGAAGTTT ACGAGAGCGTCGCCCAAGAAATCGTCCACTCCGTGGTTCGTGGCCTGAAC GGAACGATCTTCGCCTACGGCCAGCCTTCATCGGGAAAGACCTTCACCAT GAAGGGGGGTGAAGGCCACGACGCACCGGGAATCATGCAGATGGCCGCGC GAGACTTGTTCGACCTCATAGAGCATACGCCGGACCGAATGTTCATCGTG CGCGCGTCGTACATCGAGATCTCGGAAGAAAGTGTAAATGATCTGCTCAA ACCGAACAGCTCCAACCTACAGGTACTTTGTGATACGCGTCGGATATAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig102:159057..159455+

>mRNA_A-nodosum_M_contig102.31.1 ID=mRNA_A-nodosum_M_contig102.31.1|Name=mRNA_A-nodosum_M_contig102.31.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=399bp|location=Sequence derived from alignment at A-nodosum_M_contig102:159057..159455+ (Ascophyllum nodosum dioecious)
CAGACAACTCCGGGCGGTAATCCTTTACCCGATAACAAGGGCAAAACGTT
CTTCAGATTCGATCGCATTTTCGACGAAGACAGCACCACTCAAGAAGTTT
ACGAGAGCGTCGCCCAAGAAATCGTCCACTCCGTGGTTCGTGGCCTGAAC
GGAACGATCTTCGCCTACGGCCAGCCTTCATCGGGAAAGACCTTCACCAT
GAAGGGGGGTGAAGGCCACGACGCACCGGGAATCATGCAGATGGCCGCGC
GAGACTTGTTCGACCTCATAGAGCATACGCCGGACCGAATGTTCATCGTG
CGCGCGTCGTACATCGAGATCTCGGAAGAAAGTGTAAATGATCTGCTCAA
ACCGAACAGCTCCAACCTACAGGTACTTTGTGATACGCGTCGGATATAG
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