mRNA_A-nodosum_M_contig10180.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10180.2.1
Unique NamemRNA_A-nodosum_M_contig10180.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.140e-24
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    4 VPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDF 231
            +P+Y DNT+TLH  GNR++S R KHI LR+FF++E+V EG I+IHYV T+D LAD+GTKH  KHR   L+ LIN+F
Sbjct: 1589 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664          
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.870e-24
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    4 VPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDF 231
            +P+Y DNT+TLH  GNR++S R KHI LR+FF++E+V EG I+IHYV T+D LAD+GTKH   HR   L+ LIN+F
Sbjct:  920 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995          
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 3.860e-24
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    4 VPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDF 231
            +P+Y DNT+TLH  GNR++S R KHI LR+FF++E+V EG I+IHY  T+D LAD+GTKH  KHR   L+ LIN+F
Sbjct:  360 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435          
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 6.230e-24
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    4 VPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDF 231
            +P+Y DNT+TLH  GNR++S R KHI LR+FF++E+V EG I+IHY  T+D LA +GTKH  KHR   L+  IN+F
Sbjct:  135 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNF 210          
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 7.110e-24
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    4 VPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLIND 228
            +P+Y DNT+TLH  GNR++S R KHI LR+FF++E+V EG I+IHYV T+D LAD+GTKH  KHR   L+ LIN+
Sbjct:  581 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINN 655          
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.640e-22
Identity = 45/74 (60.81%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    1 SVPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLI 222
            S PLY+ NT+TLHV GN+T+S R KH+ LR+F+++EIV+EG I+IHY+ T+D LAD+GTKHL K RH  LI  I
Sbjct:  613 SAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKI 685          
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.190e-22
Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    4 VPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLIN 225
            VPLY DNT+TLH  GNR++S R KHI LR+F+++E++ EG I+IHY+ T   +AD+GTKHL KHR   L+ +I+
Sbjct: 1090 VPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHLNKHRLKHLLDIIS 1163          
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 6.710e-21
Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    4 VPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDFKA 237
            VPLY DNT+TLH  GNR++S R KHI LR+FF++++V EG I IH+V T    AD+GTKHL K R   L+ +I +F  
Sbjct:  278 VPLYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHLNKDRFQHLLNMIKNFNV 355          
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 6.900e-21
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    4 VPLYLDNTSTLHVAGNRT-YSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDFKA 237
            VPLY DNT+TLH  GNR+ +S R KHI LR+F+++E+V EG I+IHY+ T    AD+GTKHL KHR   L+ +I+ F  
Sbjct:  901 VPLYCDNTATLHALGNRSSFSSRTKHIALRFFYIRELVSEGRISIHYIPTDSNPADIGTKHLNKHRLKHLLDIISSFNV 979          
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.270e-20
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    4 VPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDFKA 237
            VPLY DNT+TLH  GNR+YS   KHI LR+FF++E+V EG I IHYV      AD+GTKHL K R   L+ +I +F  
Sbjct:  643 VPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFNV 720          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJH6_9PHAE1.140e-2460.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE2.870e-2459.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5U2_9PHAE3.860e-2459.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMK0_9PHAE6.230e-2456.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE7.110e-2460.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBU1_9PHAE1.640e-2260.81CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K129_9PHAE4.190e-2255.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9N2_9PHAE6.710e-2153.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC00_9PHAE6.900e-2154.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG39_9PHAE1.270e-2055.13Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10180contigA-nodosum_M_contig10180:4865..5104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1108849.XP_002556819.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size240
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.22e-13
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,20PDK@147545|Eurotiomycetes
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size240
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866378.9086816-CDS-A-nodosum_M_contig10180:4864..51041680866378.9086816-CDS-A-nodosum_M_contig10180:4864..5104Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10180 4865..5104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10180.2.1prot_A-nodosum_M_contig10180.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10180 4865..5104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10180.2.1

>prot_A-nodosum_M_contig10180.2.1 ID=prot_A-nodosum_M_contig10180.2.1|Name=mRNA_A-nodosum_M_contig10180.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=80bp
SVPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNT
QDQLADLGTKHLGKHRHLALIKLINDFKA*
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mRNA from alignment at A-nodosum_M_contig10180:4865..5104+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10180.2.1 ID=mRNA_A-nodosum_M_contig10180.2.1|Name=mRNA_A-nodosum_M_contig10180.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig10180:4865..5104+ (Ascophyllum nodosum dioecious)
AGCGTGCCGTTGTACCTTGACAACACTTCAACATTGCACGTCGCCGGAAA TCGTACGTACTCCCGTCGGGCGAAACATATTGTTCTGAGGTACTTCTTCG TTCAAGAAATAGTGGAGGAGGGCATGATCACCATCCACTACGTGAACACC CAAGATCAACTTGCAGACCTGGGCACCAAACATCTAGGCAAGCACCGTCA CCTCGCCCTCATCAAACTCATCAACGACTTTAAGGCCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10180:4865..5104+

>mRNA_A-nodosum_M_contig10180.2.1 ID=mRNA_A-nodosum_M_contig10180.2.1|Name=mRNA_A-nodosum_M_contig10180.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig10180:4865..5104+ (Ascophyllum nodosum dioecious)
AGCGTGCCGTTGTACCTTGACAACACTTCAACATTGCACGTCGCCGGAAA
TCGTACGTACTCCCGTCGGGCGAAACATATTGTTCTGAGGTACTTCTTCG
TTCAAGAAATAGTGGAGGAGGGCATGATCACCATCCACTACGTGAACACC
CAAGATCAACTTGCAGACCTGGGCACCAAACATCTAGGCAAGCACCGTCA
CCTCGCCCTCATCAAACTCATCAACGACTTTAAGGCCTGA
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