mRNA_A-nodosum_M_contig1018.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1018.14.1
Unique NamemRNA_A-nodosum_M_contig1018.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1018.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1018contigA-nodosum_M_contig1018:129019..129838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size290
Hectar predicted targeting categoryother localisation
Exons2
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866377.7186954-CDS-A-nodosum_M_contig1018:129018..1292681680866377.7186954-CDS-A-nodosum_M_contig1018:129018..129268Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1018 129019..129268 +
1680866377.7313986-CDS-A-nodosum_M_contig1018:129800..1298381680866377.7313986-CDS-A-nodosum_M_contig1018:129800..129838Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1018 129801..129838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1018.14.1prot_A-nodosum_M_contig1018.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1018 129019..129838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1018.14.1

>prot_A-nodosum_M_contig1018.14.1 ID=prot_A-nodosum_M_contig1018.14.1|Name=mRNA_A-nodosum_M_contig1018.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=96bp
EAGEEQRLRRREEDRRKKGRRSLFSNEQDNENNSDALDPRKHSKRTWPVP
WSAEKLQDRSGFTWRTRGVPEDSMTTSSALQSSVVGPTRGILWSL*
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mRNA from alignment at A-nodosum_M_contig1018:129019..129838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1018.14.1 ID=mRNA_A-nodosum_M_contig1018.14.1|Name=mRNA_A-nodosum_M_contig1018.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=820bp|location=Sequence derived from alignment at A-nodosum_M_contig1018:129019..129838+ (Ascophyllum nodosum dioecious)
GAAGCCGGGGAGGAACAGAGGCTGCGTAGGCGAGAAGAAGACAGGAGAAA
GAAGGGTAGACGTTCGCTTTTCTCCAACGAGCAAGATAATGAAAACAACA
GTGACGCCCTTGACCCCCGGAAGCATTCGAAGCGGACTTGGCCCGTACCC
TGGAGCGCGGAGAAGCTACAGGACAGGAGTGGCTTCACGTGGAGAACAAG
GGGAGTACCCGAGGATTCCATGACAACGTCGTCCGCTTTGCAATCTAGTG
GTGAGTGTGGGTgGGAAAAATTTCTAAAAACACTTGGCCGTTTTTGATGT
GTGTCTGTCTGTCTGGGGGTGGGTGGGAGGGGTGGCGTACTTATCGATTG
CTTGCCCTTGAGAATTTGACCGTTGCCCACGCGTCCCTTTAGACCACCAC
TGTTCCTACTAGACAGAAGGACAGACGCTGTCGATATTAAAAATCTTCAC
AACATCGAGTTTCTTGCCTATCTATCCCTTCTATTATTATTTCTGGGGTT
CAGTAGCCATCATCGACGGAGGAGAGAGAGGTTAGTACTACAAGGGTTGG
CGGGGTATCGGTGTTTTACTTTCGGACTTGGCGTGTTAAACATCTCCCGC
TGCAAAATAAAAGCTCATTTTCCCAGAGAGGAGCGTACGTTGGATTCTGC
GACGATTTGATTTGTATATGAAAAAATCCTTCGTCGAGCAAGAAAGCCTG
ACAAACAACCTTATTACCAGCTTCCCTCGACTCTGTGTTAAGCCCCTGTT
GCGTTGTCTTTcCGGTCGCTATCATTCCACAGTAGTTGGACCAACCAGGG
GGATACTGTGGTCTCTTTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1018:129019..129838+

>mRNA_A-nodosum_M_contig1018.14.1 ID=mRNA_A-nodosum_M_contig1018.14.1|Name=mRNA_A-nodosum_M_contig1018.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at A-nodosum_M_contig1018:129019..129838+ (Ascophyllum nodosum dioecious)
GAAGCCGGGGAGGAACAGAGGCTGCGTAGGCGAGAAGAAGACAGGAGAAA
GAAGGGTAGACGTTCGCTTTTCTCCAACGAGCAAGATAATGAAAACAACA
GTGACGCCCTTGACCCCCGGAAGCATTCGAAGCGGACTTGGCCCGTACCC
TGGAGCGCGGAGAAGCTACAGGACAGGAGTGGCTTCACGTGGAGAACAAG
GGGAGTACCCGAGGATTCCATGACAACGTCGTCCGCTTTGCAATCTAGTG
TAGTTGGACCAACCAGGGGGATACTGTGGTCTCTTTGA
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