mRNA_A-nodosum_M_contig10155.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10155.1.1
Unique NamemRNA_A-nodosum_M_contig10155.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10155.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10155contigA-nodosum_M_contig10155:15703..16050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size303
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866375.0505795-UTR-A-nodosum_M_contig10155:15702..157661680866375.0505795-UTR-A-nodosum_M_contig10155:15702..15766Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10155 15703..15766 -
1680866375.0844474-UTR-A-nodosum_M_contig10155:15964..160501680866375.0844474-UTR-A-nodosum_M_contig10155:15964..16050Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10155 15965..16050 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866375.0614457-CDS-A-nodosum_M_contig10155:15766..157781680866375.0614457-CDS-A-nodosum_M_contig10155:15766..15778Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10155 15767..15778 -
1680866375.0755982-CDS-A-nodosum_M_contig10155:15823..159641680866375.0755982-CDS-A-nodosum_M_contig10155:15823..15964Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10155 15824..15964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10155.1.1prot_A-nodosum_M_contig10155.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10155 15767..15964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10155.1.1

>prot_A-nodosum_M_contig10155.1.1 ID=prot_A-nodosum_M_contig10155.1.1|Name=mRNA_A-nodosum_M_contig10155.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=51bp
MGRLRRSPPSRGDEDYGPSTCLARVGESVRVASWRSRMNRSIDRILYWEQ
*
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mRNA from alignment at A-nodosum_M_contig10155:15703..16050-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10155.1.1 ID=mRNA_A-nodosum_M_contig10155.1.1|Name=mRNA_A-nodosum_M_contig10155.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at A-nodosum_M_contig10155:15703..16050- (Ascophyllum nodosum dioecious)
AGCCGCCGAGTCCACCGAAGCATGAACGATTTGTAAGGCCTCCCATGCGT
GTGCATCACCCGCCCGCCGAAGTGAGTTCGCGCTGAATGGGCCGTTTACG
GAGGTCCCCTCCTTCGAGAGGGGATGAAGATTACGGTCCGTCCACGTGTC
TTGCGAGGGTGGGAGAATCTGTCCGCGTGGCGTCTTGGAGATCACGAATG
AATCGATCGATCGATCGAATCTTATACGTAATGTTAACCGCATCAGGTCC
GGACATTTTGGAACTGGAATAGTGGGAACAATAGGGTACGTTGTTCTCCC
GACTGGAGTGTCTACCGATGTATCGAGAGATATTGTATGACCCCCAGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10155:15703..16050-

>mRNA_A-nodosum_M_contig10155.1.1 ID=mRNA_A-nodosum_M_contig10155.1.1|Name=mRNA_A-nodosum_M_contig10155.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig10155:15703..16050- (Ascophyllum nodosum dioecious)
ATGGGCCGTTTACGGAGGTCCCCTCCTTCGAGAGGGGATGAAGATTACGG
TCCGTCCACGTGTCTTGCGAGGGTGGGAGAATCTGTCCGCGTGGCGTCTT
GGAGATCACGAATGAATCGATCGATCGATCGAATCTTATACTGGGAACAA
TAG
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