mRNA_A-nodosum_M_contig1262.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1262.2.1
Unique NamemRNA_A-nodosum_M_contig1262.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1262.2.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.150e-17
Identity = 78/245 (31.84%), Postives = 99/245 (40.41%), Query Frame = 1 
Query:    1 EALFNGGCNDVIVPASSSGPRDSRRRTGG-------STTTVAWPQCSLDLRGVIVHFPVDRARPFGRALRVSVGGVTALDVASSARASAXXXXXXXXXXXXXXXXXTATAISEPSLSAPIDPPLSPKKMGVDLSVAAVGAAWTRGVAALGGHGETSDRRDARMSRRWR-----------------------RAVRGEGGSVHGPGQDRGSSSPTEREIDSADGDQLVVLDVRDAFSVKVRLVDEG 645
            +ALFNGGCNDV                          T T AWPQCS++L G+ VH PVDR  PFGR+LRV+VGG+T  D+ S+A AS                         P+ S       SP+K+GVD +V  V AAW R +                                             R    +GG          +++    E+ S DG+  VVLDVR A +VKVR VDEG
Sbjct:  428 QALFNGGCNDVXXXXXXXXXXXXXXXXXXXXXXXXXGTVTEAWPQCSVELSGLTVHLPVDRNNPFGRSLRVAVGGLTVRDLISAAVAS-------------------------PASS-------SPRKLGVDAAVGTVSAAWARDIPQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLLPLRRGASDGGRRAAEEAWAAAAAGASPEVYSVDGEDPVVLDVRTAIAVKVRFVDEG 640
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1262.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K463_9PHAE4.150e-1731.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1262contigA-nodosum_M_contig1262:69431..70209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size780
Hectar predicted targeting categoryother localisation
Exons1
Cds size777
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866699.1356122-CDS-A-nodosum_M_contig1262:69432..702091680866699.1356122-CDS-A-nodosum_M_contig1262:69432..70209Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1262 69433..70209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1262.2.1prot_A-nodosum_M_contig1262.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1262 69433..70209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1262.2.1

>prot_A-nodosum_M_contig1262.2.1 ID=prot_A-nodosum_M_contig1262.2.1|Name=mRNA_A-nodosum_M_contig1262.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=259bp
EALFNGGCNDVIVPASSSGPRDSRRRTGGSTTTVAWPQCSLDLRGVIVHF
PVDRARPFGRALRVSVGGVTALDVASSARASALNASAAGSGAATSSTLRT
ATAISEPSLSAPIDPPLSPKKMGVDLSVAAVGAAWTRGVAALGGHGETSD
RRDARMSRRWRRAVRGEGGSVHGPGQDRGSSSPTEREIDSADGDQLVVLD
VRDAFSVKVRLVDEGAAPLSTPAVPAREPARATEGGPVAEDDGDGDGDHA
EGARRRREN
back to top

mRNA from alignment at A-nodosum_M_contig1262:69431..70209-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1262.2.1 ID=mRNA_A-nodosum_M_contig1262.2.1|Name=mRNA_A-nodosum_M_contig1262.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=779bp|location=Sequence derived from alignment at A-nodosum_M_contig1262:69431..70209- (Ascophyllum nodosum dioecious)
GAAGCTTTGTTCAACGGCGGGTGCAACGACGTGATCGTTCCGGCCTCGAG
CTCTGGCCCCCGGGACTCCAGGAGGCGGACCGGGGGTTCCACCACTACCG
TGGCGTGGCCGCAGTGCTCGCTAGACCTCCGAGGCGTTATTGTGCACTTC
CCGGTCGACCGCGCTCGACCTTTCGGTCGCGCACTCCGAGTTTCTGTCGG
AGGTGTTACGGCTCTTGACGTCGCTTCGTCGGCTCGGGCAAGCGCCTTGA
ACGCTTCTGCCGCTGGTTCAGGTGCCGCCACAAGCAGTACCCTGCGAACA
GCCACGGCGATCTCGGAACCATCATTGTCAGCACCAATCGATCCGCCGCT
TTCCCCCAAGAAGATGGGGGTGGACTTGTCCGTGGCGGCGGTAGGGGCCG
CTTGGACCCGCGGAGTTGCAGCGTTGGGGGGACACGGAGAAACATCCGAC
CGCAGGGATGCGAGAATGTCACGTCGTTGGCGCCGAGCGGTCAGGGGAGA
AGGCGGAAGCGTTCACGGACCGGGGCAGGATCGTGGCTCCTCTTCTCCGA
CGGAAAGGGAGATAGATTCCGCCGACGGAGATCAACTAGTGGTCCTAGAC
GTGCGCGACGCGTTCAGCGTGAAGGTGCGCTTGGTCGATGAAGGGGCGGC
GCCGCTTTCGACACCAGCGGTGCCGGCGCGGGAGCCGGCGCGGGCGACGG
AGGGAGGCCCTGTTGCCGAAGACGATGGCGATGGTGATGGTGACCACGCT
GAAGGGGCAAGACGGCGGCGTGAAAACAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1262:69431..70209-

>mRNA_A-nodosum_M_contig1262.2.1 ID=mRNA_A-nodosum_M_contig1262.2.1|Name=mRNA_A-nodosum_M_contig1262.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=777bp|location=Sequence derived from alignment at A-nodosum_M_contig1262:69431..70209- (Ascophyllum nodosum dioecious)
GAAGCTTTGTTCAACGGCGGGTGCAACGACGTGATCGTTCCGGCCTCGAG
CTCTGGCCCCCGGGACTCCAGGAGGCGGACCGGGGGTTCCACCACTACCG
TGGCGTGGCCGCAGTGCTCGCTAGACCTCCGAGGCGTTATTGTGCACTTC
CCGGTCGACCGCGCTCGACCTTTCGGTCGCGCACTCCGAGTTTCTGTCGG
AGGTGTTACGGCTCTTGACGTCGCTTCGTCGGCTCGGGCAAGCGCCTTGA
ACGCTTCTGCCGCTGGTTCAGGTGCCGCCACAAGCAGTACCCTGCGAACA
GCCACGGCGATCTCGGAACCATCATTGTCAGCACCAATCGATCCGCCGCT
TTCCCCCAAGAAGATGGGGGTGGACTTGTCCGTGGCGGCGGTAGGGGCCG
CTTGGACCCGCGGAGTTGCAGCGTTGGGGGGACACGGAGAAACATCCGAC
CGCAGGGATGCGAGAATGTCACGTCGTTGGCGCCGAGCGGTCAGGGGAGA
AGGCGGAAGCGTTCACGGACCGGGGCAGGATCGTGGCTCCTCTTCTCCGA
CGGAAAGGGAGATAGATTCCGCCGACGGAGATCAACTAGTGGTCCTAGAC
GTGCGCGACGCGTTCAGCGTGAAGGTGCGCTTGGTCGATGAAGGGGCGGC
GCCGCTTTCGACACCAGCGGTGCCGGCGCGGGAGCCGGCGCGGGCGACGG
AGGGAGGCCCTGTTGCCGAAGACGATGGCGATGGTGATGGTGACCACGCT
GAAGGGGCAAGACGGCGGCGTGAAAAC
back to top