mRNA_A-nodosum_M_contig99.35.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig99.35.1
Unique NamemRNA_A-nodosum_M_contig99.35.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig99.35.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 9.160e-16
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 2 
Query:  614 SYNRALEITGCESMETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG 832
            SY + L+   C+S+E T+R RRLL+AG+L R   GRLPKR+MFG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:   46 SYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 118
[Close]
BLAST of mRNA_A-nodosum_M_contig99.35.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.190e-15
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:  614 SYNRALEITGCESMETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG 832
            SY R LE   C+S+E T+R RRLL+AG L R   GRLPKR+MFG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  441 SYPRTLERVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 513
[Close]
BLAST of mRNA_A-nodosum_M_contig99.35.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.630e-15
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 2 
Query:  614 SYNRALEITGCESMETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG 832
            SY + L    CES+E T+R RRLL+AG L R   GRLPKR+MFG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  178 SYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 250
[Close]
BLAST of mRNA_A-nodosum_M_contig99.35.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 9.140e-14
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 2 
Query:  614 SYNRALEITGCESMETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG 832
            SY + L+   C+S+E T+R RRLL+AG L R   GRLPKR+MFG L G  +R RGG+E+ W  CV  D+ AFG
Sbjct:  530 SYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFG 602
[Close]
BLAST of mRNA_A-nodosum_M_contig99.35.1 vs. uniprot
Match: A0A6H5JFE2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE2_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 9.910e-14
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 2 
Query:  623 RALEITGCESMETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG 832
            R L+   C+S+E T+R RRLL+AG L R   GRLPKR+MFG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  311 RTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 380
[Close]
BLAST of mRNA_A-nodosum_M_contig99.35.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.440e-13
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 2 
Query:  614 SYNRALEITGCESMETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG 832
            SY + L+   C+S+E T+R RRLL+AG L R   GRLPKR+M G L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  202 SYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 274
[Close]
BLAST of mRNA_A-nodosum_M_contig99.35.1 vs. uniprot
Match: A0A6H5KF72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.480e-12
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 2 
Query:  614 SYNRALEITGCESMETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF 829
            SY +AL+  GC+S+E T+R R LL+AG + R   GRLPKR+MFG L G    GRG  E+ W  C++ D++ F
Sbjct:   38 SYAQALKRVGCQSVEATVRQRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMF 109
[Close]
BLAST of mRNA_A-nodosum_M_contig99.35.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.730e-12
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  614 SYNRALEITGCESMETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF 829
            SY +AL+  GC+S+E T+R RRLL+AG + R   GRLPKR+MFG L G    GRG  E+ W  C++ D++ F
Sbjct:  459 SYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMF 530
[Close]
BLAST of mRNA_A-nodosum_M_contig99.35.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.850e-12
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  614 SYNRALEITGCESMETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF 829
            SY +AL+  GC+S+E T+R RRLL+AG + R   GRLPKR+MFG L G    G+G  E+ W  C++ D++ F
Sbjct:  157 SYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 228
[Close]
BLAST of mRNA_A-nodosum_M_contig99.35.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.160e-12
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  614 SYNRALEITGCESMETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF 829
            SY +AL+  GC+S+E T+R RRLL+AG + R   GRLPKR+MFG L G    GRG  E+ W  C++ D++ F
Sbjct:  157 SYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMF 228
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig99.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYE2_9PHAE9.160e-1653.42Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JLT1_9PHAE2.190e-1556.16Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JAH7_9PHAE2.630e-1554.79Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KS82_9PHAE9.140e-1453.42Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JFE2_9PHAE9.910e-1454.29Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1X4_9PHAE1.440e-1352.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF72_9PHAE1.480e-1248.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA81_9PHAE1.730e-1250.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLH5_9PHAE1.850e-1248.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4M0_9PHAE2.160e-1250.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig99contigA-nodosum_M_contig99:362015..362846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7897.ENSLACP00000017164
Model size834
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.06e-05
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria,48EZY@7711|Chordata,49BMJ@7742|Vertebrata
DescriptionRibonuclease H protein
Cds size180
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870526.4776878-CDS-A-nodosum_M_contig99:362014..3621941680870526.4776878-CDS-A-nodosum_M_contig99:362014..362194Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig99 362015..362194 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870526.4915202-UTR-A-nodosum_M_contig99:362194..3628461680870526.4915202-UTR-A-nodosum_M_contig99:362194..362846Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig99 362195..362846 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig99.35.1prot_A-nodosum_M_contig99.35.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig99 362015..362194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig99.35.1

>prot_A-nodosum_M_contig99.35.1 ID=prot_A-nodosum_M_contig99.35.1|Name=mRNA_A-nodosum_M_contig99.35.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=60bp
METTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTD
CVQSDIRAFG
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mRNA from alignment at A-nodosum_M_contig99:362015..362846-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig99.35.1 ID=mRNA_A-nodosum_M_contig99.35.1|Name=mRNA_A-nodosum_M_contig99.35.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=832bp|location=Sequence derived from alignment at A-nodosum_M_contig99:362015..362846- (Ascophyllum nodosum dioecious)
CAAAAACAACGTAGTTTGAAGAAAATTCTGAACACATCTAGACCTTCTGA
GCATCCCCCAGTCAGGGGGGGAAATGTCAAAACGTTTTGGTGGGATCATA
GGCTGCAAATATACAAAACCTCTTCATGAATGGTAGTAACAGTGGATCAA
CATTATAATATACCGGGGAGAAACTCACCGTTATGCTGTACACTTACATC
AATCGCCGTGCAGGGACACCGGACAAAAACAAAACAAAAACATTTTTAGT
ACCTGGTACATAATAAAGTAGGTTTATAATAGTGCCTCCAAAATCGCGAA
AAACAACTGATTCCTTATCTCATAATCCGTTCCTAATCTCGCGAACATAC
TGTTGAGTGTGGATGTGTGCGTCGCCTGAAGCCCACGGAGTGTCAAATGT
ATGTCGATAGGAAGCAGTAGTACTTCATTGGGGCTGTGCTTGACATCTCA
CGAAAGGCAACATTATCAGCGTAGGTTGGGAAACGGTAGCGCCCCGGTGA
TTCGCGGGGTGCCTCGTGCAGGCGCGTAACCGATGTAGCAACCGCTGCTG
TTAATGTCTACGTAACTATGCCACGTTCAGTCGGTCCGTAGCTTTTTTTT
ATGTAGTGGCCACTCGTACAACCGTGCCCTTGAGATAACCGGGTGCGAGA
GCATGGAGACAACGTTGCGCACGAGAAGACTCTTGTGGGCGGGGACGCTC
CTCCGAATGAGCGGCGGGCGGTTGCCAAAGCGAATCATGTTCGGAAACCT
TGAGGGCGCAGTGCGGAGAGGACGGGGTGGGAAGGAGAAAGAGTGGACCG
ACTGTGTACAGAGCGACATCCGGGCGTTTGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig99:362015..362846-

>mRNA_A-nodosum_M_contig99.35.1 ID=mRNA_A-nodosum_M_contig99.35.1|Name=mRNA_A-nodosum_M_contig99.35.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=180bp|location=Sequence derived from alignment at A-nodosum_M_contig99:362015..362846- (Ascophyllum nodosum dioecious)
ATGGAGACAACGTTGCGCACGAGAAGACTCTTGTGGGCGGGGACGCTCCT
CCGAATGAGCGGCGGGCGGTTGCCAAAGCGAATCATGTTCGGAAACCTTG
AGGGCGCAGTGCGGAGAGGACGGGGTGGGAAGGAGAAAGAGTGGACCGAC
TGTGTACAGAGCGACATCCGGGCGTTTGGC
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