prot_A-nodosum_M_contig984.8.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig984.8.1
Unique Name	prot_A-nodosum_M_contig984.8.1
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	648

Homology

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BLAST of mRNA_A-nodosum_M_contig984.8.1 vs. uniprot
Match: A0A6H5KJC2_9PHAE (AhpC-TSA domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC2_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 2.960e-44
Identity = 91/186 (48.92%), Postives = 119/186 (63.98%), Query Frame = 0

Query:  138 APSDPSSSAGTRRQRPSDDEPWAWLDSPPKYETGV-QLRRRPIKFKIFVVFRGGWCDTSRTLLKG---FGDLNQVVKRAGGKLVAVSSQTPELVARAVKDHKLTFSAHGDPTNKFVKSLNRRFNLDCKISTNDIVIGGYPHGMAQPCVVAIMADEFPDESSVLFKWERWQTIGTLKHETVLNQILK 319
            APS P S A  RR        W   DSPP    G  +L RR   FKI+V+FRGGWC +S+ LLKG   F +LN  +K+AGGK+VA+SSQT E V RA  D +L F A GDP+N  V  +N RF + C ++ N++V   YPHGMAQPCV+A++ D+  DE SVLF+W +WQTI +++H   L  I +
Sbjct:   94 APSTPRSEAPRRRVL------WTAFDSPPPGPGGGRELERRKTTFKIYVIFRGGWCTSSQALLKGDFRFMELNPAIKKAGGKVVALSSQTAEQVGRAAHDMRLPFQAFGDPSNGLVDEMNIRFKMGCTVNRNEMVKDAYPHGMAQPCVLAVLTDDAQDEGSVLFRWNQWQTIASMRHADTLAHITR 273

[Close]

BLAST of mRNA_A-nodosum_M_contig984.8.1 vs. uniprot
Match: D8LHS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS8_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.690e-31
Identity = 81/212 (38.21%), Postives = 110/212 (51.89%), Query Frame = 0

Query:  198 LLKGFGDLNQVVKRAGGKLVAVSSQTPELVARAVKDHKLTFSAHGDPTNKFVKSLNRRFNLDCKISTNDIVIGGYPHGMAQPCVVAIMADEFPDESSVLFKWERWQTIGTLKHETVLNQILKEVQIRTSPQVPPQTQAXXXXXXXXXXXXXXXTPHRPLGRAP--RLPPSQP---RRHPVPVDPSMGIRPVGSVYDFGRQPEMGLETPRERR 404
            L KGF ++N  +K+ GGK+VA+SSQT E V R   D +L F A GDP+N  V  +N RF + C ++ ND+V   YPHGMAQPCV+A+  D+  DE SVLF+W +WQTI +++H   L  I + + I+ +      +                  P          RLPP QP   R+ P P  PS      G    FG   ++GL  P  RR
Sbjct:    6 LRKGFMEINPGIKKVGGKVVALSSQTAEQVGRGAHDMRLPFQAFGDPSNGLVDEMNIRFKMGCTVNQNDVVKDTYPHGMAQPCVLAVSTDDAQDEGSVLFRWNQWQTIASMRHVDALAHITRALAIKKNEPEGGPSSGTPTATSHVGLDGFATPPXXXXXXXXXARLPPRQPTLLRQPPRPGSPSSSFERTGGYAPFGGD-DVGLWVPGNRR 216

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig984.8.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig984.8.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KJC2_9PHAE	2.960e-44	48.92	AhpC-TSA domain-containing protein (Fragment) n=1 ...	[more]
D8LHS8_ECTSI	1.690e-31	38.21	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000866	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	PFAM	PF00578	AhpC-TSA	coord: 182..258 e-value: 2.4E-7 score: 30.7
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 172..288 e-value: 3.9E-8 score: 35.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 451..468
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 532..547
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 324..647
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 353..371
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 574..589
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 324..348
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 180..254

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig984	contig	A-nodosum_M_contig984:42590..62577 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig984.8.1	mRNA_A-nodosum_M_contig984.8.1	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig984 42372..62764 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig984.8.1 ID=prot_A-nodosum_M_contig984.8.1|Name=mRNA_A-nodosum_M_contig984.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=648bp
MRKLQHRQQEDSTDQASRRGWTTSSRMGFVPEDATSTPALMKTRPEFTPA
LMKTRPQFSLEKNNSTVFKSPTPMRSESTCKTSSLSPRFRKVGSSGAGID
ERDESESPAAPTREGVHRRGYHTADEDMFSGEAKESSAPSDPSSSAGTRR
QRPSDDEPWAWLDSPPKYETGVQLRRRPIKFKIFVVFRGGWCDTSRTLLK
GFGDLNQVVKRAGGKLVAVSSQTPELVARAVKDHKLTFSAHGDPTNKFVK
SLNRRFNLDCKISTNDIVIGGYPHGMAQPCVVAIMADEFPDESSVLFKWE
RWQTIGTLKHETVLNQILKEVQIRTSPQVPPQTQAQADPRSRSRATSPAP
TPHRPLGRAPRLPPSQPRRHPVPVDPSMGIRPVGSVYDFGRQPEMGLETP
RERRSLSLARAPNPQPPSPSPSVGLDYRGRGRSIDEAVDSALRIGPRYNS
RANQRPPSDSSFRWEQQEQLSRPFEAGAGSERGSSVAFSRRKFQAPEDSS
GRSIMVVREGTQRRAGKSAAAPFPPRRWEGLGVDFPRNEDGESEAGDGRP
PQPHGPHPDLGELGAITGDDADGGGGGIDRDDRASSKQPPPSSHRRWMGR
VRDSFGNGGARRPPSTQAAPRNHHRRSWSRNQTPAASDFGPSALSAV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000866	AhpC/TSA
IPR036249	Thioredoxin-like_sf