prot_A-nodosum_M_contig980.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig980.1.1
Unique Nameprot_A-nodosum_M_contig980.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length219
Homology
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BLAST of mRNA_A-nodosum_M_contig980.1.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.730e-18
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 0 
Query:  151 LAMC-ACDPCGGACDDFEECMQYEKNGMWYCSHIC-AEGACAEGEACKTKARSWCRFSGYDGCPMKRVC 217
            +A C A + C GACDD +EC+QY +NG +YCS  C +  AC EGE C T+ R WCR SGYDGCP KR C
Sbjct:  217 VASCEATENCDGACDDTQECLQYARNGKYYCSDTCDSPAACEEGEECSTRPRKWCRSSGYDGCPEKRRC 285
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig980.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCN7_ECTSI1.730e-1857.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008993Tissue inhibitor of metalloproteinases-like, OB-foldGENE3D2.40.50.120coord: 25..156
e-value: 2.0E-12
score: 49.0
IPR008993Tissue inhibitor of metalloproteinases-like, OB-foldSUPERFAMILY50242TIMP-likecoord: 25..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig980contigA-nodosum_M_contig980:5151..21778 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig980.1.1mRNA_A-nodosum_M_contig980.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig980 5057..22467 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig980.1.1 ID=prot_A-nodosum_M_contig980.1.1|Name=mRNA_A-nodosum_M_contig980.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=219bp
MLFQSVILMALALVTIPMLDVAHGCSCQTRSDICDYYDEADVVLHATVLS
RTDEPSVSSELTSSSPSGTKYYLVDTITLYKGEPDVTYPEQISFSTSINE
GVCGVNPNIGEEYLFGLHRIVDPLDPMDGGELGVTLCDLFLEWGAEDEED
LAMCACDPCGGACDDFEECMQYEKNGMWYCSHICAEGACAEGEACKTKAR
SWCRFSGYDGCPMKRVCN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008993TIMP-like_OB-fold