mRNA_A-nodosum_M_contig9709.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9709.1.1
Unique NamemRNA_A-nodosum_M_contig9709.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9709.1.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 4.270e-28
Identity = 68/161 (42.24%), Postives = 92/161 (57.14%), Query Frame = 1
Query:    1 GEF-EGEFQQVLDSHGTTHEFTPPDTPQYNRVAERALGLLREKSIAMLQEVTVGASD-----RLWAEALKYACDMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQPFGTVGYVRKGKRVHKLAPRGEQCVMLGIAHNHPRDTVKVLVVQTGQIVNRQNVSW 465
            G+F EG+F +V   HG   EFTPP+TP+YN VAERALGL+ + ++A   + T    D     RLWAEA+  AC   N   T S EG  S YE ++   P +    PF     V K +R  K  P+GE+   LG AHNHPRD V++L  + G ++  +N +W
Sbjct:   98 GQFAEGQFAEVCRRHGIKQEFTPPNTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPRLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDPPPPVGSTSPFLKPA-VFKSRRKAKSQPKGEKGWYLGPAHNHPRDCVRMLT-EAGTVITTRNFTW 256          
BLAST of mRNA_A-nodosum_M_contig9709.1.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 7.220e-25
Identity = 63/162 (38.89%), Postives = 87/162 (53.70%), Query Frame = 1
Query:    7 FEGEFQQVLDSHGTTHEFTPPDTPQYNRVAERALGLLREKSIA-------MLQEVTVGASDRLWAEALKYACDMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQPFGTVGYVRKGKRVHKLAPRGEQCVMLGIAHNHPRDTVKVLVVQTGQIVNRQNVSWHS 471
            F GEF  V +      EFTP  +PQYN VAER LGL+   ++A       +   V +  +DRLWAEA+ +AC+  N    S+     SPYE W+G + S     PF    Y R  +R  KL P+GE C  +G + +HPRD  +VL  + G I   +NV+W +
Sbjct:   54 FGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHG-EASHARPYPFLKPAYCR-WQRPSKLLPKGEACFYVGPSRDHPRDCHRVLT-RVGTIQETRNVTWEA 212          
BLAST of mRNA_A-nodosum_M_contig9709.1.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.840e-24
Identity = 69/186 (37.10%), Postives = 95/186 (51.08%), Query Frame = 1
Query:    7 FEGEFQQVLDSHGTTHEFTPPDTPQYNRVAERALGLLREKSIA-------MLQEVTVGASDRLWAEALKYACDMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQPFGTVGYVRKGKRVHKLAPRGEQCVMLGIAHNHPRDTVKVLVVQTGQIVNRQNVSWH------SETAPGGPISSAPVGGNNT 525
            F GEF  V +      EFTP  +PQYN VAER LGL+ E ++A       +   V +  +D+LWAEA+ +AC+  N    S+     SPYE WYG +P      PF    Y R  +R  KL P+GE C  +G + +HPRD  +VL  + G I   ++V+W           P  PI  A  GG ++
Sbjct:   54 FGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYG-EPRPARPYPFLKPAYCR-WQRPTKLLPKGESCFYVGPSRDHPRDCHRVLT-RAGTIQETRDVTWEVLQSQLPPLQPSLPIEVAEEGGEDS 236          
BLAST of mRNA_A-nodosum_M_contig9709.1.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.900e-24
Identity = 69/186 (37.10%), Postives = 95/186 (51.08%), Query Frame = 1
Query:    7 FEGEFQQVLDSHGTTHEFTPPDTPQYNRVAERALGLLREKSIA-------MLQEVTVGASDRLWAEALKYACDMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQPFGTVGYVRKGKRVHKLAPRGEQCVMLGIAHNHPRDTVKVLVVQTGQIVNRQNVSWH------SETAPGGPISSAPVGGNNT 525
            F GEF  V +      EFTP  +PQYN VAER LGL+ E ++A       +   V +  +D+LWAEA+ +AC+  N    S+     SPYE WYG +P      PF    Y R  +R  KL P+GE C  +G + +HPRD  +VL  + G I   ++V+W           P  PI  A  GG ++
Sbjct:  321 FGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYG-EPRPARPYPFLKPAYCR-WQRPTKLLPKGESCFYVGPSRDHPRDCHRVLT-RAGTIQETRDVTWEVLQSQLPPLQPSLPIEVAEEGGEDS 503          
BLAST of mRNA_A-nodosum_M_contig9709.1.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.900e-24
Identity = 63/160 (39.38%), Postives = 87/160 (54.37%), Query Frame = 1
Query:    7 FEGEFQQVLDSHGTTHEFTPPDTPQYNRVAERALGLLREKSIA-------MLQEVTVGASDRLWAEALKYACDMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQPFGTVGYVRKGKRVHKLAPRGEQCVMLGIAHNHPRDTVKVLVVQTGQIVNRQNVSW 465
            F GEF  V +      EFTP  +PQYN VAER LGL+ E ++A       +   V +  +D+LWAEA+ +AC+  N    S+     SPYE WYG +P      PF    Y R  +R  KL P+GE C  +G + +HPRD  +VL  + G I   ++V+W
Sbjct:  800 FGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYG-EPRPARPYPFLKPAYCR-WQRPSKLLPKGESCFYVGPSRDHPRDCHRVLT-RAGTIQETRDVTW 956          
BLAST of mRNA_A-nodosum_M_contig9709.1.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.910e-24
Identity = 63/160 (39.38%), Postives = 87/160 (54.37%), Query Frame = 1
Query:    7 FEGEFQQVLDSHGTTHEFTPPDTPQYNRVAERALGLLREKSIA-------MLQEVTVGASDRLWAEALKYACDMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQPFGTVGYVRKGKRVHKLAPRGEQCVMLGIAHNHPRDTVKVLVVQTGQIVNRQNVSW 465
            F GEF  V +      EFTP  +PQYN VAER LGL+ E ++A       +   V +  +D+LWAEA+ +AC+  N    S+     SPYE WYG +P      PF    Y R  +R  KL P+GE C  +G + +HPRD  +VL  + G I   ++V+W
Sbjct:  507 FGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYG-EPRPARPYPFLKPAYCR-WQRPSKLLPKGESCFYVGPSRDHPRDCHRVLT-RAGTIQETRDVTW 663          
BLAST of mRNA_A-nodosum_M_contig9709.1.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.510e-24
Identity = 64/165 (38.79%), Postives = 90/165 (54.55%), Query Frame = 1
Query:    1 GEFEGEFQQVLDSHGTTHEFTPPDTPQYNRVAERALGLLREKSIA-------MLQEVTVGASDRLWAEALKYACDMSNMCVTSSLEGGTSPYEKWYGR-KPSLQHLQPFGTVGYVRKGKRVHKLAPRGEQCVMLGIAHNHPRDTVKVLVVQTGQIVNRQNVSWHS 471
            G F GEF  V +      EFTP  +P++N VAER LGL  E ++A       +   V +  +DRLWAEA+ +AC+  N    S+     SPYE WYG  +P+  +  PF    Y  K +R  KL P+GE C  +G + +HPRD  +VL  + G I   +NV+W +
Sbjct:  199 GFFGGEFASVCNELVIKQEFTPAHSPEFNGVAERGLGLTEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYC-KWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLT-RAGTIQETRNVTWEA 359          
BLAST of mRNA_A-nodosum_M_contig9709.1.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.580e-24
Identity = 63/163 (38.65%), Postives = 90/163 (55.21%), Query Frame = 1
Query:    7 FEGEFQQVLDSHGTTHEFTPPDTPQYNRVAERALGLLREKSIA-------MLQEVTVGASDRLWAEALKYACDMSNMCVTSSLEGGTSPYEKWYGR-KPSLQHLQPFGTVGYVRKGKRVHKLAPRGEQCVMLGIAHNHPRDTVKVLVVQTGQIVNRQNVSWHS 471
            F GEF  V +      EFTP  +P++N VAER LGL+ E ++A       +   V +  +DRLWAEA+ +AC+  N    S+     SPYE WYG  +P+  +  PF    Y  K +R  KL P+GE C  +G + +HPRD  +VL  + G I   +NV+W +
Sbjct:  551 FGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYC-KWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLT-RAGTIQETRNVTWEA 709          
BLAST of mRNA_A-nodosum_M_contig9709.1.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.600e-24
Identity = 63/163 (38.65%), Postives = 90/163 (55.21%), Query Frame = 1
Query:    7 FEGEFQQVLDSHGTTHEFTPPDTPQYNRVAERALGLLREKSIA-------MLQEVTVGASDRLWAEALKYACDMSNMCVTSSLEGGTSPYEKWYGR-KPSLQHLQPFGTVGYVRKGKRVHKLAPRGEQCVMLGIAHNHPRDTVKVLVVQTGQIVNRQNVSWHS 471
            F GEF  V +      EFTP  +P++N VAER LGL+ E ++A       +   V +  +DRLWAEA+ +AC+  N    S+     SPYE WYG  +P+  +  PF    Y  K +R  KL P+GE C  +G + +HPRD  +VL  + G I   +NV+W +
Sbjct:  527 FGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYC-KWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLT-RAGTIQETRNVTWEA 685          
BLAST of mRNA_A-nodosum_M_contig9709.1.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.890e-24
Identity = 63/163 (38.65%), Postives = 90/163 (55.21%), Query Frame = 1
Query:    7 FEGEFQQVLDSHGTTHEFTPPDTPQYNRVAERALGLLREKSIA-------MLQEVTVGASDRLWAEALKYACDMSNMCVTSSLEGGTSPYEKWYGR-KPSLQHLQPFGTVGYVRKGKRVHKLAPRGEQCVMLGIAHNHPRDTVKVLVVQTGQIVNRQNVSWHS 471
            F GEF  V +      EFTP  +PQYN VAER LGL+ E ++A       +   V +  +D+LWAEA+ +AC+  N    S+     SPYE WYG  +P+  +  PF    Y  K +R  KL P+GE C  +G + +HPRD  +VL  + G I   ++V+W +
Sbjct:  404 FGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYC-KWQRPSKLFPKGESCFYVGPSRDHPRDCHRVLT-RAGTIQETRDVTWEA 562          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9709.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K293_9PHAE4.270e-2842.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KWE4_9PHAE7.220e-2538.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE1.840e-2437.10Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE1.900e-2437.10Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JBA7_9PHAE1.900e-2439.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE1.910e-2439.38Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J594_9PHAE2.510e-2438.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K622_9PHAE2.580e-2438.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE2.600e-2438.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB16_9PHAE4.890e-2438.65Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9709contigA-nodosum_M_contig9709:12946..13473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28532.XP_010520710.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size528
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.63e-18
EggNOG OGsCOG2801@1|root,KOG1334@1|root,KOG0017@2759|Eukaryota,KOG1334@2759|Eukaryota,37SNQ@33090|Viridiplantae,3GHRQ@35493|Streptophyta,3HVU8@3699|Brassicales
DescriptionGAG-pre-integrase domain
Cds size528
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870495.1897037-CDS-A-nodosum_M_contig9709:12945..134731680870495.1897037-CDS-A-nodosum_M_contig9709:12945..13473Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9709 12946..13473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9709.1.1prot_A-nodosum_M_contig9709.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9709 12946..13473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9709.1.1

>prot_A-nodosum_M_contig9709.1.1 ID=prot_A-nodosum_M_contig9709.1.1|Name=mRNA_A-nodosum_M_contig9709.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=176bp
GEFEGEFQQVLDSHGTTHEFTPPDTPQYNRVAERALGLLREKSIAMLQEV
TVGASDRLWAEALKYACDMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQP
FGTVGYVRKGKRVHKLAPRGEQCVMLGIAHNHPRDTVKVLVVQTGQIVNR
QNVSWHSETAPGGPISSAPVGGNNTA
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mRNA from alignment at A-nodosum_M_contig9709:12946..13473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9709.1.1 ID=mRNA_A-nodosum_M_contig9709.1.1|Name=mRNA_A-nodosum_M_contig9709.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=528bp|location=Sequence derived from alignment at A-nodosum_M_contig9709:12946..13473+ (Ascophyllum nodosum dioecious)
GGCGAGTTTGAGGGTGAGTTTCAGCAGGTGCTTGACTCGCATGGTACCAC TCACGAGTTCACACCTCCTGATACGCCACAATACAATAGGGTGGCAGAGC GAGCCCTCGGACTATTACGAGAAAAGTCCATCGCAATGCTGCAAGAGGTG ACAGTGGGTGCAAGTGACAGACTTTGGGCTGAGGCACTGAAGTATGCCTG CGATATGTCCAACATGTGTGTCACATCATCACTTGAGGGCGGTACATCGC CGTACGAGAAGTGGTATGGCAGAAAACCGTCTCTGCAGCACCTTCAACCG TTTGGTACCGTCGGTTACGTGCGAAAGGGGAAGAGAGTGCACAAATTAGC ACCCAGAGGAGAACAGTGCGTCATGCTGGGCATTGCGCATAACCACCCGC GTGATACGGTCAAGGTACTGGTGGTTCAGACGGGGCAAATAGTGAACCGT CAAAATGTTTCTTGGCACTCTGAGACCGCCCCCGGTGGACCCATTTCATC CGCTCCGGTGGGGGGCAATAACACAGCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9709:12946..13473+

>mRNA_A-nodosum_M_contig9709.1.1 ID=mRNA_A-nodosum_M_contig9709.1.1|Name=mRNA_A-nodosum_M_contig9709.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at A-nodosum_M_contig9709:12946..13473+ (Ascophyllum nodosum dioecious)
GGCGAGTTTGAGGGTGAGTTTCAGCAGGTGCTTGACTCGCATGGTACCAC
TCACGAGTTCACACCTCCTGATACGCCACAATACAATAGGGTGGCAGAGC
GAGCCCTCGGACTATTACGAGAAAAGTCCATCGCAATGCTGCAAGAGGTG
ACAGTGGGTGCAAGTGACAGACTTTGGGCTGAGGCACTGAAGTATGCCTG
CGATATGTCCAACATGTGTGTCACATCATCACTTGAGGGCGGTACATCGC
CGTACGAGAAGTGGTATGGCAGAAAACCGTCTCTGCAGCACCTTCAACCG
TTTGGTACCGTCGGTTACGTGCGAAAGGGGAAGAGAGTGCACAAATTAGC
ACCCAGAGGAGAACAGTGCGTCATGCTGGGCATTGCGCATAACCACCCGC
GTGATACGGTCAAGGTACTGGTGGTTCAGACGGGGCAAATAGTGAACCGT
CAAAATGTTTCTTGGCACTCTGAGACCGCCCCCGGTGGACCCATTTCATC
CGCTCCGGTGGGGGGCAATAACACAGCT
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