mRNA_A-nodosum_M_contig9590.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9590.1.1
Unique NamemRNA_A-nodosum_M_contig9590.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9590.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9590contigA-nodosum_M_contig9590:17902..18993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size277
Hectar predicted targeting categoryother localisation
Exons2
Cds size252
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870465.252488-UTR-A-nodosum_M_contig9590:17901..179261680870465.252488-UTR-A-nodosum_M_contig9590:17901..17926Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9590 17902..17926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870465.2642245-CDS-A-nodosum_M_contig9590:17926..179791680870465.2642245-CDS-A-nodosum_M_contig9590:17926..17979Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9590 17927..17979 -
1680870465.2754312-CDS-A-nodosum_M_contig9590:18794..189931680870465.2754312-CDS-A-nodosum_M_contig9590:18794..18993Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9590 18795..18993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9590.1.1prot_A-nodosum_M_contig9590.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9590 17927..18993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9590.1.1

>prot_A-nodosum_M_contig9590.1.1 ID=prot_A-nodosum_M_contig9590.1.1|Name=mRNA_A-nodosum_M_contig9590.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=84bp
GVHRSRHTLLLSEHSSDVECISDELYIITRQPSCGLYPTTQPKCLASISL
APCDRTQRHSSYPSFKGKNDTYLTRRPTASLHF*
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mRNA from alignment at A-nodosum_M_contig9590:17902..18993-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9590.1.1 ID=mRNA_A-nodosum_M_contig9590.1.1|Name=mRNA_A-nodosum_M_contig9590.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1092bp|location=Sequence derived from alignment at A-nodosum_M_contig9590:17902..18993- (Ascophyllum nodosum dioecious)
GGTGTACACAGATCACGGCATACATTATTGTTATCGGAGCATTCTTCCGA
TGTGGAGTGCATTTCCGATGAGTTATACATCATCACCCGCCAGCCCAGCT
GTGGGCTGTACCCCACCACCCAACCCAAATGCCTCGCCAGCATCTCACTT
GCCCCATGCGACCGTACACAACGACACTCGAGCTATCCAAGCTTTAAAGG
TGTGTTCAAAAAACGTCTCGGTGTTTAAGAAAATCTGAACGCATCTAAGC
CTTCTGAGCATCCACCTTCAGGGAAAAAAATGTCTTAAGGCTCGGTTGGG
AACATCGGCTGTAGAGACAAACGAGCAGGTCGCAAGCATTACTGCTACAG
CTTTTTGAGGGCCTACTGTACTGAGGTGTTGCGCTGATCATTGTTGTAGC
TTACTTACGTAAGTGCACATGGAATCGTTGCTCTGTCGTTGTTCATCACA
GGTTGCAAGCACGGTGCTCGTCTGGGAACGGGATGGTTTGCACCGCTTTT
ATTTGCGCCGTTACCGGGTGCTCCAGGACCCTCAACACAAGCGCATGCCA
GCTTGGAGGCACCGGCATGTGAGATATTGTAAAATGTTCGCACTGTGAAA
GCCCGCCTAGCTATTAATAGTGGCTGCCCTAAACCAACTAACCTTGTTGC
GACTGAGAAATTCCGTGGGTCTTTTTTTCAACTTCCCTGTATCTTTAAGA
TTGTGTATGCAGTGGACTGCCACCAGTAATACGGAAAACACAGAAATATT
AATGTAATTAATTGCTGTACTACTGTATTGTACTGTTGTACACTACTGTC
ATAAATAAAGTATAACAATAGTTAATTGTACTGTGCTGTATATACTGTTG
ACCCAATGTTACTACCATCGGGGAACCCTTTTAAATGCCACGAAGAGGTT
TTGTATTTGCAGCCTATGATCCCACCTTTTCCCCCCTGACTGGGGGATGC
TCATAAGGTCTAGGCGCGTTCAGATTTTTATTTAAACAATTTTTCGCCTG
CGTTTGCGCATCAGGAAAAAACGATACTTACCTAACGCGAAGGCCGACAG
CATCGCTGCATTTCTGAGAGACCTTGCAAGCCGATGGGAGAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9590:17902..18993-

>mRNA_A-nodosum_M_contig9590.1.1 ID=mRNA_A-nodosum_M_contig9590.1.1|Name=mRNA_A-nodosum_M_contig9590.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at A-nodosum_M_contig9590:17902..18993- (Ascophyllum nodosum dioecious)
GGTGTACACAGATCACGGCATACATTATTGTTATCGGAGCATTCTTCCGA
TGTGGAGTGCATTTCCGATGAGTTATACATCATCACCCGCCAGCCCAGCT
GTGGGCTGTACCCCACCACCCAACCCAAATGCCTCGCCAGCATCTCACTT
GCCCCATGCGACCGTACACAACGACACTCGAGCTATCCAAGCTTTAAAGG
AAAAAACGATACTTACCTAACGCGAAGGCCGACAGCATCGCTGCATTTCT
GA
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