mRNA_A-nodosum_M_contig959.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig959.5.1
Unique NamemRNA_A-nodosum_M_contig959.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig959.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig959contigA-nodosum_M_contig959:52206..55651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size442
Hectar predicted targeting categoryother localisation
Exons3
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870464.973452-CDS-A-nodosum_M_contig959:52205..522601680870464.973452-CDS-A-nodosum_M_contig959:52205..52260Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig959 52206..52260 +
1680870464.9832637-CDS-A-nodosum_M_contig959:55005..551991680870464.9832637-CDS-A-nodosum_M_contig959:55005..55199Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig959 55006..55199 +
1680870464.9984722-CDS-A-nodosum_M_contig959:55459..556511680870464.9984722-CDS-A-nodosum_M_contig959:55459..55651Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig959 55460..55651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig959.5.1prot_A-nodosum_M_contig959.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig959 52206..55651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig959.5.1

>prot_A-nodosum_M_contig959.5.1 ID=prot_A-nodosum_M_contig959.5.1|Name=mRNA_A-nodosum_M_contig959.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=147bp
MRSCQGAPSNEHLTFGIKGASQPDSGETLQAQVLPAFFDLESTNFVAKST
VGVLSLSMLQDAIEETLEQTNVDIVDFVACDSMYKCSYNQGNQFISFLVR
VFESPTKSSRQLLDTDAFVAENIEGGFLVELQLQQGDRLYFSSLVRD
back to top

mRNA from alignment at A-nodosum_M_contig959:52206..55651+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig959.5.1 ID=mRNA_A-nodosum_M_contig959.5.1|Name=mRNA_A-nodosum_M_contig959.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3446bp|location=Sequence derived from alignment at A-nodosum_M_contig959:52206..55651+ (Ascophyllum nodosum dioecious)
ATGAGGAGTTGTCAAGGAGCGCCTTCGAACGAGCATCTTACATTTGGAAT
CAAAGGTGAGAGGCAAGGCTGATATTAATACTGTATAGAGCAGTCCAGCA
GTAGTACTACCACTACTGTTGTTCTTGTCATCTGTCATTTTCAACAAACA
CTGCTGTGGTACGGTCGTAGTAATACCTGTAGGTAGTTCTACGTTCGTTG
GGCTATTTTCGTACGAGTAGTGCACGGCTATACGAATTAGCGGGATGACG
CGGGACGGGAAGGCCGAACCTGCCTCGCGAAGTGAAATTCTCAGGCGGGT
ACGGGAACAGGGAAGCATGTATTTTACCCGTTCAGTTGACCACGTCACGA
GCAGGATTGGCAACCCTAGGCCCTGTCATTACGAAGCGACAGAATCTGTC
CAGAGATTCTGTCCAAAAAATCTGTCGAGAGCACAGCTCTGTGATTGGCC
AAATGGAGCTCGACACTACTAGTCAGAAAGTTCTGTCCACCGACGGATTC
TGTCGGTGGACGGATAATTGTTTCGAGAATGTGTCCACCCTCTGATCATA
GGTTTTTTCTTCTCGTAATAAGTATATCGAGGGGGATCAATGCGAGTGCC
ATGTAGTGACTAGGATGACAGGGCCGGATTGCGCAGTCATGTGCAATTTA
ATAAATACACACACACACACAGACGTGCAACGTACCGGAAACAGTACAAC
TGATGCCGAAACAAACAAAAAACAGCTGCTATATACTGAAAACAGTACAA
CTGATACCAATTAGACAAAAGACAGCAGCTGCTGCGTACTGGACACAGTA
TAACTACCCGAGTAGCTGTTTTTCTTGTTTGTTTCTTCAAGGGCTTTCGT
AAACCGTTTGAGGAGCTAAAACTTTTTGAAACGCAAAGCACGCTCTGGTG
CCTCCGTGTATGCCCTACTTCGGTATTACAGTAGTTTAAAGAAAAATCAG
AACGCATCTAGACCTTCTGAGCATCCCCCAGTCAGGGGGAAAAATGTCAA
AGTTGCAGTCTGTTGACAGTCACGGTTTATGATTGTATGTAATTAAAACT
ACTGGTCATGACATATAGCAAGGATAAGGACCAACCGGGTTAGTCTAGGC
TGCCAATCCTGCTGGTGGTCAGCTGAACAGGGAAAGTGAATTATTTCCTG
TCCCCTTTCGAGCCTAAAACTTTGGTCTCGCGAGACAGGTTCGGCAGTGC
TGTCCCGCATCAGTCTGCTCATCTCCATACTCAGGCTGAATCTGGTGCTC
ACTTTTACGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCAATTGCATTTT
TTTAAATTAAACGGCCATACGCCATCGAGTTAGTCCCGAGTTTATCGGGT
CGCGAAATTGCGTACCGATGGCGTTCACTGCCGAGAGTCCGCCGGCACAG
GGCCAATAATCCTCAAGGTAGTTCCGAAGAGGGCTGCCTTGGCAGGTCAC
CATGGACCAATTAATATGCGTCTCTCTTTCCCACACCCACTATTGGTATG
AAGTGGTGTATAAATTTGTATCAGTAGTAGCAAATACTAGGCTTGTACCA
GCACTATACTTCGTATGCTCCCTCGTCCTAGTTTACGCACCGTTAATTAC
ACTGTGCTATACCGTGGCGCTACTATTTATAGACCTGTTATAGTAAGAGA
ACCATCTATTATTAGAGAAAGCCTCCGTCGGGGTGGTAGCGGTAATTCCG
AGGGAACGAAACAAGTTCTCCACACTTCTCTTAAGGACGGCGTAGCCCTT
GTTTGATACTGAAAACATTAACGCATTGTTAGAGTAATTATGTTCTATGT
TATCTTGACCATAACTAGGAAGAGAAAAAAAGGAGGAAAACAGTTCCCTA
AAAAGAGAACCCGCCAAACAATAAATTAATGTTGGAAGTAAAATATTTTA
CGAATAATTTGCAGCAGCCCGACTATCAGAGAAAATTCCAAAGGTGATTG
GAAGGAGGCAGAGATCGACAAACCCTTATAATATGCTAATTAGCTAGATC
ACAACACATTAGATTTTGCTCACATGTCCAATTCTTCCTGTACAGTAGTT
GAGCGTTAGCCAGCCAGGTGATGTGACCCGTGCTGGATGGGATCCAGACC
GCGGGAGAGAAAGGTGGAAATGGCTTGGGGCAGAAACCTCTTGTTACAAA
TGATGGTCTCCGTGATCGTTCAGGTTGCTTTGAGATGGAGAACTGGGACA
TTTCTATCTCACTAAAAGCGATGGGCGATAACTTTCTACAGCGGTGGCCG
ATTGGATGATAGGATGATAATAAAGCATTCTGGACGTGACCGTCGAATGG
GAAACGTGTACCTAGAGGCGGCGCCCAAGAGTTTAAAAATGGCACAGAGA
TGAGACTAAATAGGAGCCGATCAGAGCGTGCTATAGTGACTCGAAATGGC
GAATTAAAATGCAACAGCATATAAATAATAAGTACTTCGTACATATGTAT
TGTTTCTACTCTCCTCGAGCTTAGACGACTGCAGTATAATTTTTTCTGGA
CGTGGCATGAAATGACGAGATTGAATCAAAGCTCGACATCTCCAACTTTT
ACCGCGGACTCTATAATAGTAACAATGTATGTATGGCTCCCTTCTCTCGT
TTCATACACGGGCATTGGTTCCTCTAACATAAACGCTTGATGGTCGGTTG
ATTTGTAGGGGACAAAAGAAACCACCCGTTAAGTTCCCCCTCGTGCGAGG
GTTTTCACGTCCCCAGGAACTTAAATGCCCAGAAAAGATTTCAATAACCC
GATGCGCTCACACCAGATTGCGGATTATCCTCCATCATTTTCCGATACAG
GGGCAAGTCAGCCAGACTCGGGAGAAACGCTCCAGGCTCAAGTGCTGCCA
GCATTCTTTGACCTGGAAAGCACCAACTTCGTGGCTAAGTCCACCGTCGG
CGTCTTGTCCTTGAGCATGCTGCAGGACGCCATTGAGGAGACGCTTGAGC
AGACCAACGTGGACATCGTGGACTTTGTAGCCTGCGACTCAATGGTGAGC
CACTAAGCCTCAAAGCGCCTCTCCATTGAATGATTCGTCAATATCTCAAT
ATCATCCTCGACGGCCAGCAGATGAATAACCGGGATATTCTCGCTTCTGT
CCATAGaAGTTCGCGATCCCGACGAAGGGCGTTCGGCGGGATCGATCCTG
ACCCAAAACTCTTCTGCTAAGATTCCTTTTTATCTGCACTTTTCGCAACC
AACCTTCATATGTTTTGACGTTTTTATCACTTTGTCATGCGTTCTCGACG
GCAGTATAAGTGCTCCTACAACCAAGGAAACCAGTTTATCAGCTTCCTTG
TGAGGGTGTTCGAGTCACCTACGAAGTCTTCCAGACAACTACTAGACACC
GATGCCTTCGTAGCTGAAAACATCGAAGGAGGTTTTCTGGTGGAATTGCA
GCTGCAGCAGGGTGACCGTCTCTACTTCTCGAGCCTCGTCCGTGAT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig959:52206..55651+

>mRNA_A-nodosum_M_contig959.5.1 ID=mRNA_A-nodosum_M_contig959.5.1|Name=mRNA_A-nodosum_M_contig959.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=441bp|location=Sequence derived from alignment at A-nodosum_M_contig959:52206..55651+ (Ascophyllum nodosum dioecious)
ATGAGGAGTTGTCAAGGAGCGCCTTCGAACGAGCATCTTACATTTGGAAT
CAAAGGGGCAAGTCAGCCAGACTCGGGAGAAACGCTCCAGGCTCAAGTGC
TGCCAGCATTCTTTGACCTGGAAAGCACCAACTTCGTGGCTAAGTCCACC
GTCGGCGTCTTGTCCTTGAGCATGCTGCAGGACGCCATTGAGGAGACGCT
TGAGCAGACCAACGTGGACATCGTGGACTTTGTAGCCTGCGACTCAATGT
ATAAGTGCTCCTACAACCAAGGAAACCAGTTTATCAGCTTCCTTGTGAGG
GTGTTCGAGTCACCTACGAAGTCTTCCAGACAACTACTAGACACCGATGC
CTTCGTAGCTGAAAACATCGAAGGAGGTTTTCTGGTGGAATTGCAGCTGC
AGCAGGGTGACCGTCTCTACTTCTCGAGCCTCGTCCGTGAT
back to top