mRNA_A-nodosum_M_contig10131.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10131.1.1
Unique NamemRNA_A-nodosum_M_contig10131.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Match: D8LPY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY8_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 4.320e-34
Identity = 67/115 (58.26%), Postives = 81/115 (70.43%), Query Frame = 1
Query:   16 LPSMDQQRRPKRWLRLLLVESYLQRGLDLSETSDPYCVVYIDRVWHDDSHVCWRTLTPRWSHWVEFEVF-QTGSAAADLGW-GHEVRVEVWDKDCVSADDFIGEVSLSIREDQQG 354
            L      +RP RWLRLLL  + L+RGLD+S TSDP+C VY+DRVW  ++ VCW TL PRW   +E EVF + G+ A  LG  GHE+RVEVWDKD V A+DFIGEV L +RE Q G
Sbjct: 3833 LKEQTTSQRPTRWLRLLLQGARLRRGLDVSGTSDPFCTVYVDRVWFAETRVCWGTLAPRWDQRIEIEVFGREGALAQGLGLVGHEIRVEVWDKDVVGANDFIGEVHLFLRECQDG 3947          
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Match: A0A6H5KLV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV8_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 8.010e-34
Identity = 66/107 (61.68%), Postives = 77/107 (71.96%), Query Frame = 1
Query:   40 RPKRWLRLLLVESYLQRGLDLSETSDPYCVVYIDRVWHDDSHVCWRTLTPRWSHWVEFEVFQTGSAAAD-LGW-GHEVRVEVWDKDCVSADDFIGEVSLSIREDQQG 354
            RP RWLRLLL  + L+RGLD+S TSDP+C VY+DRVW  ++ VCW TL PRW   +E EVF  G A A  LG  GHE+RVEVWDKD V A+DFIGEV L +RE   G
Sbjct: 4033 RPTRWLRLLLQGAQLRRGLDVSGTSDPFCTVYVDRVWFAETRVCWGTLAPRWDQQIEIEVFGRGGAPAQGLGLVGHEIRVEVWDKDVVGANDFIGEVHLFLRERHDG 4139          
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Match: A0A7S0XQR3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XQR3_HEMAN)

HSP 1 Score: 53.9 bits (128), Expect = 5.740e-6
Identity = 30/87 (34.48%), Postives = 47/87 (54.02%), Query Frame = 1
Query:   88 RGLDLSETSDPYCVVYIDRVWH----DDSHVCWRTLTPRWSHWVEFEVFQTGSAAADLGWGHEVRVEVWDKDCVSADDFIGEVSLSI 336
            R  DL+  SDP+   +++R        ++ V W T+ P W    EFE+        DL  G  +R+EVWDKD + +DDF+GE+ + +
Sbjct:   21 RAADLTGKSDPFVRAFVERAGELLVTMETSVRWETVNPLWEE--EFELSDD-----DLEQGTTMRLEVWDKDKIGSDDFLGEIVVDM 100          
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Match: A0A7S1HL30_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HL30_HEMAN)

HSP 1 Score: 53.9 bits (128), Expect = 6.070e-6
Identity = 30/87 (34.48%), Postives = 47/87 (54.02%), Query Frame = 1
Query:   88 RGLDLSETSDPYCVVYIDRVWH----DDSHVCWRTLTPRWSHWVEFEVFQTGSAAADLGWGHEVRVEVWDKDCVSADDFIGEVSLSI 336
            R  DL+  SDP+   +++R        ++ V W T+ P W    EFE+        DL  G  +R+EVWDKD + +DDF+GE+ + +
Sbjct:  198 RAADLTGKSDPFVRAFVERAGELLVTMETSVRWETVNPLWEE--EFELSDD-----DLEQGTTMRLEVWDKDKIGSDDFLGEIVVDM 277          
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Match: A0A5B8MQL6_9CHLO (C2 domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MQL6_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 1.630e-5
Identity = 29/88 (32.95%), Postives = 48/88 (54.55%), Query Frame = 1
Query:   91 GLDLSETSDPYCVVYI--DRVWH--DDSHVCWRTLTPRWSHWVEFEVFQTGSAAADLGWGHEVRVEVWDKDCVSADDFIGEVSLSIRE 342
             +D++ TSDPYC VY+  D ++   + S V   TL P+W+     E+ +     A+      + +EVWD D  S DDF+G+V + + +
Sbjct:  678 AMDITNTSDPYCTVYVKGDALYRKKEKSSVKSSTLNPKWN-----ELLKVWPVDAESDAELTLVIEVWDHDTTSGDDFMGKVEVKLND 760          
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Match: A0A7S4U7B8_9EUKA (Hypothetical protein n=2 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4U7B8_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 2.000e-5
Identity = 30/86 (34.88%), Postives = 48/86 (55.81%), Query Frame = 1
Query:   79 YLQRGLDL----SETSDPYCVVYIDRVWHDDSHVCWRTLTPRWSHWVEFEVFQTGSAAADLGWGHEVRVEVWDKDCVSADDFIGEV 324
            Y+++G DL    S++SDPY    I       + V  +TL P+W+    F++       +D  W   +++EVWDKD +S+DDF+G V
Sbjct:   75 YIEKGTDLIIKDSKSSDPYVKFTITGQQEQKTRVIKKTLNPQWNEAFTFQM-------SDY-WEKSIKLEVWDKDKISSDDFMGVV 152          
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Match: UPI000A2A85A7 (uncharacterized protein LOC110238220 isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A85A7)

HSP 1 Score: 52.4 bits (124), Expect = 2.190e-5
Identity = 31/98 (31.63%), Postives = 50/98 (51.02%), Query Frame = 1
Query:   55 LRLLLVESYLQRGLDLSETSDPYCVVYIDRVWHDDSHVCWRTLTPRWSHWVEFEVFQTGSAA-ADLGWG---HEVRVEVWDKDCVSADDFIGEVSLSI 336
            L + ++E      +D +  SDPYCV+ +       ++V + TL P W    +FE+         D  +G   H + V+VWDKD ++ DDF+G V + I
Sbjct:   44 LTITVIEGRNLSVMDPNGKSDPYCVIVVGDQ-QQSTNVQYSTLNPEWRETFKFELSAIPQIKDTDENYGCLIHYINVDVWDKDTLNRDDFMGRVVIPI 140          
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Match: A0A6P8IWY2_ACTTE (Phosphatidylinositol-3-phosphate phosphatase n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IWY2_ACTTE)

HSP 1 Score: 52.4 bits (124), Expect = 2.190e-5
Identity = 30/98 (30.61%), Postives = 49/98 (50.00%), Query Frame = 1
Query:   55 LRLLLVESYLQRGLDLSETSDPYCVVYIDRVWHDDSHVCWRTLTPRWSHWVEFEVFQTGSAAADLGWG----HEVRVEVWDKDCVSADDFIGEVSLSI 336
            L + +VE      +D +  SDPYC+V +       + V + T+ P W    +FEV     +  D  +G    H   +++WDKD ++ DDF+G V + I
Sbjct:   44 LTITVVEGRQLPVMDPNGKSDPYCIVSVGGQ-EQTTAVQYATVNPEWRETFQFEVPAIPQSDTDDNYGSCLIHYATIDIWDKDTLNRDDFMGRVMVPI 140          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LPY8_ECTSI4.320e-3458.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLV8_9PHAE8.010e-3461.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0XQR3_HEMAN5.740e-634.48Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1HL30_HEMAN6.070e-634.48Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A5B8MQL6_9CHLO1.630e-532.95C2 domain-containing protein n=1 Tax=Chloropicon p... [more]
A0A7S4U7B8_9EUKA2.000e-534.88Hypothetical protein n=2 Tax=Paramoeba aestuarina ... [more]
UPI000A2A85A72.190e-531.63uncharacterized protein LOC110238220 isoform X1 n=... [more]
A0A6P8IWY2_ACTTE2.190e-530.61Phosphatidylinositol-3-phosphate phosphatase n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10131contigA-nodosum_M_contig10131:671..1027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPY8
PFAMsBestrophin,C2,Copine
Model size357
Max annot lvl2759|Eukaryota
KEGG koko:K16280
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.56e-35
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota
EC2.3.2.27
Descriptionnegative regulation of response to water deprivation
Cds size348
COG categoryU
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866373.7932332-CDS-A-nodosum_M_contig10131:670..10181680866373.7932332-CDS-A-nodosum_M_contig10131:670..1018Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10131 671..1018 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866373.8027308-UTR-A-nodosum_M_contig10131:1018..10271680866373.8027308-UTR-A-nodosum_M_contig10131:1018..1027Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10131 1019..1027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10131.1.1prot_A-nodosum_M_contig10131.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10131 671..1018 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10131.1.1

>prot_A-nodosum_M_contig10131.1.1 ID=prot_A-nodosum_M_contig10131.1.1|Name=mRNA_A-nodosum_M_contig10131.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=116bp
MPLPSMDQQRRPKRWLRLLLVESYLQRGLDLSETSDPYCVVYIDRVWHDD
SHVCWRTLTPRWSHWVEFEVFQTGSAAADLGWGHEVRVEVWDKDCVSADD
FIGEVSLSIREDQQG*
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mRNA from alignment at A-nodosum_M_contig10131:671..1027-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10131.1.1 ID=mRNA_A-nodosum_M_contig10131.1.1|Name=mRNA_A-nodosum_M_contig10131.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig10131:671..1027- (Ascophyllum nodosum dioecious)
TGCCGATTGATGCCATTGCCAAGCATGGACCAGCAGCGACGCCCAAAGCG CTGGCTGCGGCTTCTGCTCGTCGAGTCTTACCTTCAGCGTGGACTCGATC TGTCGGAAACAAGCGATCCGTATTGCGTTGTGTACATCGACCGCGTGTGG CACGACGACTCCCATGTATGTTGGCGCACCCTCACTCCGCGATGGAGCCA CTGGGTGGAGTTTGAGGTTTTTCAGACGGGTAGTGCGGCGGCTGATCTCG GTTGGGGCCACGAGGTCCGGGTCGAGGTTTGGGACAAGGATTGCGTTAGC GCTGATGACTTCATTGGTGAAGTTTCCCTCTCCATCCGCGAAGATCAACA AGGGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10131:671..1027-

>mRNA_A-nodosum_M_contig10131.1.1 ID=mRNA_A-nodosum_M_contig10131.1.1|Name=mRNA_A-nodosum_M_contig10131.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at A-nodosum_M_contig10131:671..1027- (Ascophyllum nodosum dioecious)
ATGCCATTGCCAAGCATGGACCAGCAGCGACGCCCAAAGCGCTGGCTGCG
GCTTCTGCTCGTCGAGTCTTACCTTCAGCGTGGACTCGATCTGTCGGAAA
CAAGCGATCCGTATTGCGTTGTGTACATCGACCGCGTGTGGCACGACGAC
TCCCATGTATGTTGGCGCACCCTCACTCCGCGATGGAGCCACTGGGTGGA
GTTTGAGGTTTTTCAGACGGGTAGTGCGGCGGCTGATCTCGGTTGGGGCC
ACGAGGTCCGGGTCGAGGTTTGGGACAAGGATTGCGTTAGCGCTGATGAC
TTCATTGGTGAAGTTTCCCTCTCCATCCGCGAAGATCAACAAGGGTGA
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