mRNA_A-nodosum_M_contig9582.2.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9582.2.2
Unique NamemRNA_A-nodosum_M_contig9582.2.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9582.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9582contigA-nodosum_M_contig9582:674..2039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size329
Hectar predicted targeting categoryother localisation
Exons3
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870464.6903565-CDS-A-nodosum_M_contig9582:673..8031680870464.6903565-CDS-A-nodosum_M_contig9582:673..803Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9582 674..803 -
1680870464.7110114-CDS-A-nodosum_M_contig9582:1198..12711680870464.7110114-CDS-A-nodosum_M_contig9582:1198..1271Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9582 1199..1271 -
1680870464.7242591-CDS-A-nodosum_M_contig9582:1915..19341680870464.7242591-CDS-A-nodosum_M_contig9582:1915..1934Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9582 1916..1934 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870464.7343783-UTR-A-nodosum_M_contig9582:1934..20391680870464.7343783-UTR-A-nodosum_M_contig9582:1934..2039Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9582 1935..2039 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9582.2.2prot_A-nodosum_M_contig9582.2.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9582 674..1934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9582.2.2

>prot_A-nodosum_M_contig9582.2.2 ID=prot_A-nodosum_M_contig9582.2.2|Name=mRNA_A-nodosum_M_contig9582.2.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=74bp
MVGAFFVTDHCKMDAKQRHDRSDGVSFIIPWRADEPRSRRRSRGQDEEGR
QYIGASASRRTSQDEDQDHCSGGL
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mRNA from alignment at A-nodosum_M_contig9582:674..2039-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9582.2.2 ID=mRNA_A-nodosum_M_contig9582.2.2|Name=mRNA_A-nodosum_M_contig9582.2.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1366bp|location=Sequence derived from alignment at A-nodosum_M_contig9582:674..2039- (Ascophyllum nodosum dioecious)
GAAATCACGGGTGTGCCGTGCACCGGAACAGACGAAAGTCATAGGTGAAC
GAACGTGATAGGAACGGAGGACGCTCGGAGCGGTGCCCTCTTGTTCGTAG
CCCCGATGGTGGGAGCATTTTTCGGTAGGAGCCGAGATGAATATTCTTGC
ATTATGGCCGTACATAAAAACTCTAACCATGGGCGATAGTACTTAAGCGC
GAGCGAACGCTTGGGCAACGTATCTCTGAGAATACGCGATATTCACCAGA
GTGTGGAGACTATCTGAGATATATAGTGATCCATTTCAGCAAATTGACAA
CGGTAAAGAACTTCTTTACTAGAGAAATGGACACGACACGGAATTTCCGG
TTGTACTGGAAAGCCAGTCACAGTAACGTGGAGTTAAAAATAGTACTTAC
TCTACTATGAAACGAGGATTGTGGCAACCAACAATCGAAAATGAAACGGA
GTACAGTATTTTGTGTGGGCTACCTAGTCTGCAACAGTACTACTCGATTT
TGGTCCTGTCTGAATTTACGGATCATTATCCGTTTTCAAGCAATAACGTG
CGGAGCTGAGAACGCTCGATCCCAGCTATGGATTAATTCCCTCTTTTATG
GGACTACAATAGTGGTTTATGGCCACCAAAGACATCATCAGTGTGCAGCT
CTTTGACAACAGCTGATGCTTCAAGTCAGAGTTTTGGCTTGGGTGGGCTA
ATACGTACTATTAATAGTGCGGCACCCATCGCCATTTAATCTCTCTTCTG
ACATTCCGCGTGAGAAAGTTACAGATCACTGCAAGATGGACGCGAAACAG
AGGCACGACCGTTCTGACGGAGTCTCTTTTATTATCCCATGGTGGGGCAG
AATCTCTTGCGCGTGGGCATGGTATTGTTTCGGTGATTCGAAAATAACCC
GTACTCTACAGATGTTACAGCGTTTCTACTGGTGGGTTGGTTTGGACCAA
AGTGTACGTTGGTGGATCAGAAGATGTCTCTTCTGCCAGGCACGAAAGAC
ATCACGCCAGGCGATCCGCTGGCTGACTACGTTAATGCCTTGAAGGCATG
GGACAGAGATGCCCATGATCAATATTTCGTGCGATTTCACGATGATCCCG
GACCCTCACAAGTAATGTTGGCGGAAGAGTTCTACGCTACTGACGTTGAT
GGCGTACCAGGATCCTGCTGCTTACAATCTCATGTACGGGAAGGTATTTT
CGCGATGCCGACATGTCCCGTGATGACGATTTTCAGGAGAGCTGACGAGC
CAAGATCAAGACGAAGATCTCGAGGCCAAGACGAAGAGGGACGACAGTAC
ATTGGAGCGAGCGCTTCCAGGAGAACCAGTCAAGATGAAGACCAAGATCA
CTGTTCGGGTGGGCTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9582:674..2039-

>mRNA_A-nodosum_M_contig9582.2.2 ID=mRNA_A-nodosum_M_contig9582.2.2|Name=mRNA_A-nodosum_M_contig9582.2.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at A-nodosum_M_contig9582:674..2039- (Ascophyllum nodosum dioecious)
ATGGTGGGAGCATTTTTCGTTACAGATCACTGCAAGATGGACGCGAAACA
GAGGCACGACCGTTCTGACGGAGTCTCTTTTATTATCCCATGGAGAGCTG
ACGAGCCAAGATCAAGACGAAGATCTCGAGGCCAAGACGAAGAGGGACGA
CAGTACATTGGAGCGAGCGCTTCCAGGAGAACCAGTCAAGATGAAGACCA
AGATCACTGTTCGGGTGGGCTG
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