prot_A-nodosum_M_contig958.6.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig958.6.1
Unique Nameprot_A-nodosum_M_contig958.6.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length132
Homology
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BLAST of mRNA_A-nodosum_M_contig958.6.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.880e-17
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 0 
Query:   33 VMSAVFASKLLGATTVIGDSGASRQTFDDGTHVRNKRLPAAEEAYLIIGDGERLPVACYGDLDLGLHCENYGKPWSNVWVTLKNVAVVPGIWFDIIFFN 131
            ++S++F  +  G+T  IGDS ++     DGTHV N R P AEE +L IGDG +L   C+G LD+  HC        +V VT+K++AVVP + FD++  N
Sbjct:    1 MLSSIFPRRRPGSTVWIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCR------EDVLVTMKDIAVVPDLAFDLVSLN 93
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig958.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE1.880e-1742.42Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig958contigA-nodosum_M_contig958:173843..174238 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig958.6.1mRNA_A-nodosum_M_contig958.6.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig958 173842..174238 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig958.6.1 ID=prot_A-nodosum_M_contig958.6.1|Name=mRNA_A-nodosum_M_contig958.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=132bp
PLSSVFGGPESGPGPTPYVLQLPTAESRFFPHVMSAVFASKLLGATTVIG
DSGASRQTFDDGTHVRNKRLPAAEEAYLIIGDGERLPVACYGDLDLGLHC
ENYGKPWSNVWVTLKNVAVVPGIWFDIIFFNQ
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