mRNA_A-nodosum_M_contig951.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig951.3.1
Unique NamemRNA_A-nodosum_M_contig951.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig951.3.1 vs. uniprot
Match: A0A6H5K7N3_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7N3_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 3.530e-44
Identity = 93/178 (52.25%), Postives = 121/178 (67.98%), Query Frame = 2 
Query:   14 SADQKEPKFKMSGQVIAAIVVTAVAGNILAARRLRTTMAGMGARNAQRK--EAERAFRETQEWMIRNASFSG----NPLRGRVPEGWEFNDCREAAFGEQRLNSQVLQKLSTLGVKNFVADKDEVKAAYHRRAMNLHPDR-STDSALGGGTKSANQEEFKRVASAYKWLEENYYRKDP 526
            S  + + KF  +GQV+ AIVVTA AG+I  ARR R TM    +RNAQR+  EAE A R  ++     A+  G    +P  GR+P+GWEF+D REAAF EQRLNSQV+Q LS LGV++FVA  DEVKAAY  +AM LHPDR S DS+   G      +EF +VA++Y+WL++NY+R+ P
Sbjct:   18 SVPEDKEKFAFTGQVLTAIVVTAAAGSIFGARRFRKTMTDTVSRNAQRRKAEAESAARAARDRAAARANAGGAADGHPFPGRIPKGWEFDDSREAAFAEQRLNSQVVQHLSALGVRSFVAGSDEVKAAYRGKAMALHPDRRSADSSKQSG------QEFMKVAASYEWLDKNYFRRRP 189
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig951.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7N3_9PHAE3.530e-4452.25J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig951contigA-nodosum_M_contig951:62500..68521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1828
Hectar predicted targeting categorysignal peptide
Exons4
Cds size486
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig951.3.1prot_A-nodosum_M_contig951.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig951 62543..67222 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870450.5962582-UTR-A-nodosum_M_contig951:62499..625421680870450.5962582-UTR-A-nodosum_M_contig951:62499..62542Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig951 62500..62542 +
1680870450.6557071-UTR-A-nodosum_M_contig951:67222..685211680870450.6557071-UTR-A-nodosum_M_contig951:67222..68521Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig951 67223..68521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870450.608431-CDS-A-nodosum_M_contig951:62542..626161680870450.608431-CDS-A-nodosum_M_contig951:62542..62616Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig951 62543..62616 +
1680870450.6198657-CDS-A-nodosum_M_contig951:63920..641131680870450.6198657-CDS-A-nodosum_M_contig951:63920..64113Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig951 63921..64113 +
1680870450.632906-CDS-A-nodosum_M_contig951:65622..657261680870450.632906-CDS-A-nodosum_M_contig951:65622..65726Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig951 65623..65726 +
1680870450.6440237-CDS-A-nodosum_M_contig951:67107..672221680870450.6440237-CDS-A-nodosum_M_contig951:67107..67222Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig951 67108..67222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig951.3.1

>prot_A-nodosum_M_contig951.3.1 ID=prot_A-nodosum_M_contig951.3.1|Name=mRNA_A-nodosum_M_contig951.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=162bp
MSGQVIAAIVVTAVAGNILAARRLRTTMAGMGARNAQRKEAERAFRETQE
WMIRNASFSGNPLRGRVPEGWEFNDCREAAFGEQRLNSQVLQKLSTLGVK
NFVADKDEVKAAYHRRAMNLHPDRSTDSALGGGTKSANQEEFKRVASAYK
WLEENYYRKDP*
back to top

mRNA from alignment at A-nodosum_M_contig951:62500..68521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig951.3.1 ID=mRNA_A-nodosum_M_contig951.3.1|Name=mRNA_A-nodosum_M_contig951.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6022bp|location=Sequence derived from alignment at A-nodosum_M_contig951:62500..68521+ (Ascophyllum nodosum dioecious)
AGATGGAGGGGTCAGCGCAGATCAAAAAGAACCCAAGTTCAAGATGAGCG
GCCAGGTCATCGCCGCGATAGTCGTGACCGCCGTGGCCGGAAACATCCTC
GCTGCCCGTCGATTAAGGCGAGAGAGCAAACAACCTGTAGTGTTATAAAC
GGTGACAGCATTGCAATACTCGATATTATATACGAACTACTTGGTATATA
GATGCCGTACTATCTAGTCTAATTCGTATTCAGTTGTGTTTGATCGGTTT
GGACAACAAGATACAAATTTATATTCTACTCTTTTTTTTATGGTGGGGGG
GGGGGGGAGGGTGGTTGGTCGCGGGGGTTTTTCCCAACTTAGTCGTAGGT
GTGTAGCGAGTAACAGCAGTGGGTAAAACATCTTCGGTGTTCGAAGTTTC
CGGGGGTATTAAACCACACTTTTTCGCCGATAATCACAAACACAAAGGCC
CCTAGACTGTACAGAGGTCATTCTCGCTTCAGAGGGAAAATTAACTTCAG
TACGACTCAAATTTTGTCCCTCGGAGATGTGGTGTATCGGGAAGGGGGGG
GGGGGGATAAACTATTCTTACAATAGTATGGGGTTTGGTATATATTTTCG
TGGCGTGTTGTGTAAATACCAAGGCGGGTTAGGATACACCCCGTTACAAA
AGCGAAACCTGTCACGCTGTCTGCTGTTACTTGTTTTTGATGTGGGACAT
TAAGCACAACGGCGAATCCCCTTCCCTACTTACTACAATACAGTACCAGT
ATAAACGCGAAGTACTTGCTGTGACATAGAAATTAGTACATGCGTCTTTT
CGGGGTCCCCACTGCAACCTGCGCCTACATGCCACCTACGTCCACCACCA
GTGTCGCTGGCTGCCTCACCGCCGACTTCTCAACGTTTTGCAAGACAGCA
TCAAATGACATCAAATGACGTCAAATGAACCACATGTCGAGGCTGCAGTC
GTAAGTTGGGCCAGCGCTGCTACTGTATGTCTGCTTCTACGATAGGGGTA
AATCAGCTCTTATTTTGTGCCCCGGCAAGCGCGCTCATCTACATCCATTT
GTAGGGAACCGATGCGCCCGCCTGTTCGTGATCCGCCTCGCTTCCTTGCG
TGTTGAAAGACGGAGTATTTTTTTTTTACGCTGGTCAGTCAAAATATTTC
ATATTTTGGCGTCGACCACCCGAAGAAATAATCACCAACGATTTGCGCGA
GACAAAGAAATATTCCATCAAAAGAAAAACAATAACGACAGCAGCATAAA
ATCAGCAGCAAATCCACGCGACAGTAACGCCTTCTTCCTTGTGCAACACT
AGAAACAAAACAAAAATGTAGCAGCAGCATCAAGCACAAAGGAAGACACA
CACATACACTAAAATAGAACAACGATATGACAGTGTTGAGAAAAACGCCG
CCATTTTCGTGTAAAACCCAGGACAACGATGGCGGGAATGGGGGCCCGAA
ACGCCCAGCGCAAGGAGGCCGAGCGCGCTTTTCGCGAGACTCAGGAGTGG
ATGATAAGGAACGCCTCTTTTTCTGGAAACCCCCTGCGGGGAAGGGTGCC
GGAAGGATGGGAATTCAACGATTGTAGAGAGGCGGCTTTTGGAGAACAGC
GGCTGAATTCCCAGGTGCGGGACAATTGTTTTGACGATTTCCCCGTTTAG
TTGTTGGCGAGTGACTTGATTATAATGTACACCGCACGTGGGGTTATGAC
GTTTCTACTGATAGCTGGAAACCATGCATCACGCCTCCCTCGCTTGTTTG
AGCACTCCCTTAGGGTACAGGTACCACAGGCGACGGTTTCGTCGGGGAAA
ATGACTATTAATTAATTAATCGGGGAGATGAAAGCTTTCACCTTCAAATA
CACCAGGGGTGTGTGATATCTATATAAATATATATATATACAGTATATAT
ATATCGTGAAGAGGTTGTAATGGTATAGTTACCTATGAGTTTCACTGTTA
TGATATTGATAGATAAAACAAACCGCCTCTCCTTGTGTTTTTCTTGTTTA
TTTTCAGACCCCGGGGAGAAGGGTGAAAAATCCCCCCTTGGTTTTCCTTT
TATTTGTTTGTTTCCTTTCCTGATGCCCGAGGAAGACTATGTATCCTAAT
GAGCTTAAGTTAGGCTATTATATAGTATATAGTGTATAGTATATACCAAC
CACCCTGTTCGAAAAGGGCTTGAGAAGGCTATTGTGTTGTATTGCCGCTC
GTCGCCCGAGTGGTCTAGTAGGTAAGCTGCACATCTGCTAGTACGGAAGT
CGTGAGTTCGATTCTTACCAAAGTAGGATTTGTGTTCTTTCTTTCGTAAC
GGAAAGCGTGGGAACGTGAGTAAGtaAAATTCAACCATCGGTTGACGAGT
TTTAAGAGTGCGGAACTTGCATCGCGATAAAAAAAAAATGTAAGGCGTGA
ACCGGGGAGAGATGGGAAGATCCTTTGTGACCACAGGCAGGATGGTAATG
ATGAGGTCCATCGGCTATAAGTGAGATGAAAGAAAAAAAAAAAAAAAAAA
AAAAATGTATTAAAAGTGGCCAAGAATATGTCATCCCCCCTTGTGTACGA
TAGTGTACGACAATCGTTATCACAAGGCACCAATAATATGTCACACTCAA
TATTAATATTAATACTAATAGCTAGTTAATATGAAAGTTGAAAGTTCGAG
CCACGGGAGCGAAGTTTTAACGTTACAGAATATCATCAAACAACGCAGTA
GGTGTACAGGACAAATCCTCAGATGTTATATTAATATTAATAGTTAGTTT
TGGTGGGAAAAAAAAGTGCGGCTGTAGACAAAAATAGAAGTCACGTGATG
TAAAAATAAAATTAAAAAAACTCCCAGGATTTATCTGATCCAACCAAGAG
AACAAAAGTCAGGGGGTTTGTGCGTTTTTTTTCTGTAACGATAGGCGTAC
TACACGTAAACCTGAAGTTCTGCCGAATGTTTTTCTTGCGGGGAGAAATT
TTTCGTGTGGGAGACTGTCAAAAACGATAGTCGTCCTCTTTATTTTCTTG
CGAAATCTACCCCCCCCCCAAAAATAAAATAAAATAAAATAACAGTCACC
AAAGTGCTTCAGCTCTATAGCTGTTATTATAGTGGAAAGTGAGTATATAG
CTTCTTTTTCGCACTTCACATAGGTGCTGCAAAAACTGTCGACTCTGGGG
GTGAAGAACTTCGTGGCGGACAAGGACGAAGTCAAGGCCGCTTATCACCG
GAGGGCCATGAACCTTCACCCAGACAGGCACGCCAAGCCCCCCCCCCCGT
CTCTTAAGCACTGTAGTGAGCTGTAGCAAGCTGTACGGTCCAGACACGAA
AGAACCATACATCCCTCCTTATTTCTACAGCACAGGATACAACCCCATCC
TCGCGGCACGAGGCAATCTACTCGTAGAGCTATAATAGCTACCTATCATA
GTGTTGCAAAAACGAAGAAGAAACAGCAAATAGATACTACGTTATGCGCT
GCCCCCAAGCGGGGACCGGCCCGCCCAGTAGAAATACGTTGAGCTTTTTC
TTGGTTCGGGTCCTTGCGAGGGAATGGCGCGAGGGGCCGGGGTTTCCTGA
GGATCGGCTGGAGTCGTTCAACGAACGCGAGGGGATATCCTAAATTATTC
CCCGACTTTAGGGAGGGGGTGGTACCAAAAATGCCCCTCCCGGGGACAGA
TTTGACCGACCCCCTTGTCAAACAAGTTAAGTTCGTGGCAAGCTTGCCGA
TTATGTAGGGGATTATACGGTTCCATCCCCGGGAGGGACTGTTTTGGTGA
CATCCCCGGGGACGGGATCGTCAAATCCCCTGCCCCCCCATTCGTTGGAA
GATTCGCTGGTTTTCTCCCCGTGGATGGAGAGTTCGAGATGCCCGCGACG
AATCGATGTTGTTCGCCGACACGAGCCGTGCATGTGCCTCGCGCGTGATC
GGAAACCCAGGCATCCAAAACTCCACACCACTTGAATCCCTTTTAGAACT
CGGGAGCAAGTTTTTTGCCAAAGTTTTTGTACACTAAAAAATAAAAAATA
AAAACAGACGCGGGTACTGTTATAAAGTAAAAATGTCCAATGTTGTTCCG
CCTCATAGCACGCGCGCGGTCGTTGATATATGCCGACCAAAATAAAAAAT
AAACGCAAAGTTTTTTAATGGAACACCCAAGGTTTATTACGCACTTAGTA
CTTAGTACTGAAGTACTCCGTAACACCCAAGAACATGGCACCCCTGTTAC
ATCATTGAAAAATGTCGCGGTACTTTCTTTTTTTCCTTCCCTTGAATGGG
AGCACTTCGTCCGCTACGTAACTTCGATCCGAATCGAATCGAATCCCTCT
TGACCCCCCTGGAAACCCGCTCTGTTTTTTTATCACGAAAATAAAAACGA
TACAAAACTTGCACCCCGGGTAGGGTCCTCAAAAGGTTTTTTAACTGTGT
AACACTTTCCTTTCCTCCCCCCCTCCCCCCCCCCCCCTAGCCTCTTGTCC
CTTCCAACGCCTTCATGAAACCTTTTCTTGTTCCTCGCTCGCACGCCCTC
CCATGCTTGGTCTTTCTCTGCTGTTCGCCGACCTCTGGATTTGGTTAAAA
AATTAAATGGAACATCGTCAAATCCCGCGATCTGACGGCTGCCATGCCTT
CCCACCAGGAGCACCGATTCGGCGCTCGGCGGGGGCACGAAATCGGCAAA
CCAAGAGGAGTTCAAGCGCGTTGCGTCGGCGTACAAGTGGCTAGAAGAGA
ATTACTACCGAAAAGATCCGTGATGTAAAATGCCGCTGCCGAGGGGGTGC
ACTCTTGTAGATTACGGAGGACTCGCGCACGCGCACAAGCTTTTGCTACA
TATATTAATACATATATTAGTACATATATTAGCAAGAGCGAGGACGTAGG
GTCCTCGGGCCTCCTTGGGATATATATATAATATGTGATTTGTTTCGAAC
TTTCGTGGTGGGCGTTCGCGCGTGATCATATATGATCAGGTCTCGCGTTG
CTGGGCGGCGAAAGATTGGCGTGCGTCTCTTCTTCGATGTATTTGAGCCG
GATGGAGGGAAGCACACTGTCTCCTCCAATAGAAATTATTGCAGGGGCTG
GTGGGGGGCAAGCGATGACGGGTCGTGTGGATTTCAAAACAAAAATCCGC
CTTCAGAGTAAGTGAATTAGTTGCGTACATGCTCTGCACTCGTGGTGTGG
GAGGGATATTTGTTACTTCTAACAAGTTAACGAAGGATTTTGAGCCTCGG
AGCTATGAAGTATTGGCCACTGGCTGCTGCTGCTGTTACTGCTGCTGCTG
CTGTTACTGCTGCTGCCAGTGATGCCGCTGCTGCTTGCTGCTCGCTTCAG
GCGGCTCATGTCACGTGGTCCTTGGAGGCCTTGTGGGAGACTTGCTACTT
GTTACTGCACGACTATTGCGGGAAACTTTATACTACATATACTATACTGT
ACTGTATTTCCAGTATATTTTACTACATGCACTTTACTGTGGTTATTTGT
TTTGCTCTAACGGCACACTGCAGAGGACGAGAGAGCATTTTGTAAAAGTC
TGTAGAGATATTAATTAGCCACTCGTACATACAAACGGGGGTATCTAATA
GTATCCAAACCGATATTTTTTTGGGGGGGGGTAGGGGTTTCGAGGACATA
CTTGTACAGCCACCGGTCGATCTACACACAAGACAGTACTCGTACGTAGC
TGTCGGTTCTTCTAGCCACCGGTAGATAGAAACTCTAATTGCTCGCTCGA
GTGATGTAGTTAGTGGTAACCACGTACACCTACTAGTGCGGAAGTCGTGA
GTTCGGTTCTTGTGAAAGCAGGATTTTTATTCTGGCGTCCATAGGGGAAA
GCGTGAGAACGTGAGAAATAAATGAAATTCAACCGTTCTTGGTTGACGAG
TTGCAAGAGTGCTGAACTACTTGGATCGCGATAAACATTCATAAGATATT
CGTAAGGCGAGCACCGGGGAGACAGGGGAACATCCTTATTGTTAGTGGCC
ACAGGCATCATGGCAACGTTGCAGTAGGTGGGATTGGTAGCCTGGAACGT
CGAGGCCCATCAGCCGTGAGAT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig951:62500..68521+

>mRNA_A-nodosum_M_contig951.3.1 ID=mRNA_A-nodosum_M_contig951.3.1|Name=mRNA_A-nodosum_M_contig951.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at A-nodosum_M_contig951:62500..68521+ (Ascophyllum nodosum dioecious)
ATGAGCGGCCAGGTCATCGCCGCGATAGTCGTGACCGCCGTGGCCGGAAA
CATCCTCGCTGCCCGTCGATTAAGGACAACGATGGCGGGAATGGGGGCCC
GAAACGCCCAGCGCAAGGAGGCCGAGCGCGCTTTTCGCGAGACTCAGGAG
TGGATGATAAGGAACGCCTCTTTTTCTGGAAACCCCCTGCGGGGAAGGGT
GCCGGAAGGATGGGAATTCAACGATTGTAGAGAGGCGGCTTTTGGAGAAC
AGCGGCTGAATTCCCAGGTGCTGCAAAAACTGTCGACTCTGGGGGTGAAG
AACTTCGTGGCGGACAAGGACGAAGTCAAGGCCGCTTATCACCGGAGGGC
CATGAACCTTCACCCAGACAGGAGCACCGATTCGGCGCTCGGCGGGGGCA
CGAAATCGGCAAACCAAGAGGAGTTCAAGCGCGTTGCGTCGGCGTACAAG
TGGCTAGAAGAGAATTACTACCGAAAAGATCCGTGA
back to top