mRNA_A-nodosum_M_contig9477.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9477.1.1
Unique NamemRNA_A-nodosum_M_contig9477.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9477.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9477contigA-nodosum_M_contig9477:5599..6393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size390
Hectar predicted targeting categoryother localisation
Exons3
Cds size285
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870447.7871068-UTR-A-nodosum_M_contig9477:5598..56511680870447.7871068-UTR-A-nodosum_M_contig9477:5598..5651Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9477 5599..5651 +
1680870447.8465054-UTR-A-nodosum_M_contig9477:6341..63931680870447.8465054-UTR-A-nodosum_M_contig9477:6341..6393Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9477 6342..6393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870447.8020108-CDS-A-nodosum_M_contig9477:5651..57611680870447.8020108-CDS-A-nodosum_M_contig9477:5651..5761Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9477 5652..5761 +
1680870447.818664-CDS-A-nodosum_M_contig9477:5983..61241680870447.818664-CDS-A-nodosum_M_contig9477:5983..6124Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9477 5984..6124 +
1680870447.8346653-CDS-A-nodosum_M_contig9477:6307..63411680870447.8346653-CDS-A-nodosum_M_contig9477:6307..6341Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9477 6308..6341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9477.1.1prot_A-nodosum_M_contig9477.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9477 5652..6341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9477.1.1

>prot_A-nodosum_M_contig9477.1.1 ID=prot_A-nodosum_M_contig9477.1.1|Name=mRNA_A-nodosum_M_contig9477.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=95bp
MPDCWPVVERQIVEAFSRKKSKCAQRTTSCGRGFASQVWEISYRFMLCAG
RPASLLLDKNPLDIVQEGATRAFMPYHRTKDEGGTRGLRRRIRR*
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mRNA from alignment at A-nodosum_M_contig9477:5599..6393+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9477.1.1 ID=mRNA_A-nodosum_M_contig9477.1.1|Name=mRNA_A-nodosum_M_contig9477.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=795bp|location=Sequence derived from alignment at A-nodosum_M_contig9477:5599..6393+ (Ascophyllum nodosum dioecious)
TGCTGCGCGTTGAGAGTGTCAAGGGACCTTTTCACGAGTGTGGCGATGGT
GGCATGCCAGACTGCTGGCCGGTAGTGGAACGTCAGATTGTCGAAGCATT
CAGTCGGAAGAAGAGCAAATGCGCCCAAAGGACTACATCGTGCGGGAGAG
GATTCGCTTCCCAGTGAGTGAATTTCAAACCGATGGCCTCTACCAGTAGT
TTGGTGCCAGGATGAACACTGATGGGTAGACTGCCCATCCCATTTCGTAT
CATACATTCCCTGATATCCCACCGCCCCTGCCCCTCAAAATGAAGATTGC
AACCGTTCTCTGTTGCTGGTTCGCTACAGAAACAGCTGATAGCGTACTAA
GTATACTACACACCCGCCCTCTCGCCGTTGTGCAGGGTGTGGGAAATATC
GTATAGGTTCATGTTATGCGCTGGGCGGCCGGCAAGCTTGCTCCTGGATA
AAAATCCTCTCGATATCGTGCAGGAGGGCGCTACCCGCGCGTTCATGCCG
TACCATCGCACTAAGGACGAAGGTGGGTGCGCGACTTTTCGATTCTCCCT
GGGCGATTAGGGTTGAGAAAATCATCTGACGCACACATTCTACTGCCGTT
TAGCTTTAGAGTCCACATTCCTTTTTGTTTTGTATCTCCGCTTTCTAACC
CATTACTAAGGCGTCGTTCGCGGTTGTTATTCCCTCCCAACGCCGTGACT
CAACATAAGAACAAGGGGCCTCAGGCGGCGCATTAGACGGTGATGAGGAT
GGTGCGAGTCATTCTCGATTGAACCTTCGCGGTATCCCAGCTGCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9477:5599..6393+

>mRNA_A-nodosum_M_contig9477.1.1 ID=mRNA_A-nodosum_M_contig9477.1.1|Name=mRNA_A-nodosum_M_contig9477.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=285bp|location=Sequence derived from alignment at A-nodosum_M_contig9477:5599..6393+ (Ascophyllum nodosum dioecious)
ATGCCAGACTGCTGGCCGGTAGTGGAACGTCAGATTGTCGAAGCATTCAG
TCGGAAGAAGAGCAAATGCGCCCAAAGGACTACATCGTGCGGGAGAGGAT
TCGCTTCCCAGGTGTGGGAAATATCGTATAGGTTCATGTTATGCGCTGGG
CGGCCGGCAAGCTTGCTCCTGGATAAAAATCCTCTCGATATCGTGCAGGA
GGGCGCTACCCGCGCGTTCATGCCGTACCATCGCACTAAGGACGAAGGTG
GAACAAGGGGCCTCAGGCGGCGCATTAGACGGTGA
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