mRNA_A-nodosum_M_contig9475.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9475.1.1
Unique NamemRNA_A-nodosum_M_contig9475.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5KWH4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWH4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 6.220e-11
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRF 138
            NVRH+FLR+LV + +I+V HVPS YQ ADILTK L  D F  HR F
Sbjct:   36 NVRHHFLRELVERKEILVIHVPSPYQRADILTKSLPKDTFESHRDF 81
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BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.420e-10
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRFL 141
            +VRH+FLR L  +G I V HVPSE QHADILTK L  DLF +HR F+
Sbjct:  278 DVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFV 324
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BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.790e-10
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRFL 141
            +VRH+FLR L  +G I V HVPSE QHADILTK L  DLF +HR F+
Sbjct:  444 DVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFV 490
[Close]
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.820e-10
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRF 138
            +VRH+FLR L  +G I V HVPSE QHADILTK L  DLF +HR F
Sbjct:  909 DVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDF 954
[Close]
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.820e-10
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRF 138
            +VRH+FLR L  +G I V HVPSE QHADILTK L  DLF +HR F
Sbjct: 1176 DVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDF 1221
[Close]
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 5.000e-10
Identity = 25/51 (49.02%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRFLTNLS 153
            +VRH+F+R+LV + +I + HVP+++QHAD LTK ++ + FA+HR F+ NL 
Sbjct:  326 DVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNLQ 376
[Close]
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5K3N0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3N0_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 7.390e-10
Identity = 25/51 (49.02%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRFLTNLS 153
            +VRH+ +R+LV + +I + HVP+++QHAD LTKV++ + FA+HR F+ NL 
Sbjct:  238 DVRHHIIRELVERKEISITHVPTQFQHADFLTKVISKESFALHRDFVMNLQ 288
[Close]
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5K826_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K826_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 8.370e-10
Identity = 24/51 (47.06%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRFLTNLS 153
            +VRH+F+R+LV + +I + HVP+++QHAD LTK +  +  A+HR F+ NL 
Sbjct:   53 DVRHHFIRELVERKEISITHVPTQFQHADFLTKAICKEPCALHRDFVMNLQ 103
[Close]
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5KHH9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHH9_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.330e-9
Identity = 25/50 (50.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRFLTNL 150
            +VRH+F+R+LV + +I + HVP+++QHAD LTK +  + FA+HR F+ NL
Sbjct:  626 DVRHHFIRELVERKEISITHVPTQFQHADFLTKAIRKESFALHRDFVMNL 675
[Close]
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Match: A0A6H5JGN8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGN8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.360e-9
Identity = 24/49 (48.98%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRFLTN 147
            +VRH+F+R+LV + +I + HVP+++QHAD LTK ++ + FA+HR F+ N
Sbjct:  367 DVRHHFIRELVERKEISITHVPTQFQHADSLTKAISKESFALHRDFVMN 415
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9475.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWH4_9PHAE6.220e-1163.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KBM6_9PHAE2.420e-1063.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9B2_9PHAE2.790e-1063.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE3.820e-1065.22Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE3.820e-1065.22Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L4G9_9PHAE5.000e-1049.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3N0_9PHAE7.390e-1049.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K826_9PHAE8.370e-1047.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHH9_9PHAE1.330e-950.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JGN8_9PHAE3.360e-948.98Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9475contigA-nodosum_M_contig9475:12349..12507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog90675.XP_010506885.1
PFAMsPhyH
Model size159
Max annot lvl35493|Streptophyta
KEGG koko:K00477
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016705,GO:0016706,GO:0044464,GO:0048244,GO:0051213,GO:0055114,GO:0071944
Exons1
Evalue8.24e-05
EggNOG OGsCOG2801@1|root,COG5285@1|root,KOG0017@2759|Eukaryota,KOG3290@2759|Eukaryota,37PY8@33090|Viridiplantae,3GG3P@35493|Streptophyta,3HYAG@3699|Brassicales
EC1.14.11.18
DescriptionPhytanoyl-CoA dioxygenase (PhyH)
Cds size159
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870447.6648047-CDS-A-nodosum_M_contig9475:12348..125071680870447.6648047-CDS-A-nodosum_M_contig9475:12348..12507Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9475 12349..12507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9475.1.1prot_A-nodosum_M_contig9475.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9475 12349..12507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9475.1.1

>prot_A-nodosum_M_contig9475.1.1 ID=prot_A-nodosum_M_contig9475.1.1|Name=mRNA_A-nodosum_M_contig9475.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=53bp
NVRHYFLRKLVRQGDIIVYHVPSEYQHADILTKVLAFDLFAIHRRFLTNL
SD*
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mRNA from alignment at A-nodosum_M_contig9475:12349..12507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9475.1.1 ID=mRNA_A-nodosum_M_contig9475.1.1|Name=mRNA_A-nodosum_M_contig9475.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at A-nodosum_M_contig9475:12349..12507- (Ascophyllum nodosum dioecious)
AATGTTCGTCATTATTTCTTGAGAAAGCTTGTCCGCCAGGGGGACATCAT
CGTATATCATGTTCCTTCTGAGTATCAACATGCGGATATATTGACGAAAG
TTTTAGCGTTTGACTTGTTCGCGATCCACCGGCGTTTCTTGACGAATCTT
AGCGATTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9475:12349..12507-

>mRNA_A-nodosum_M_contig9475.1.1 ID=mRNA_A-nodosum_M_contig9475.1.1|Name=mRNA_A-nodosum_M_contig9475.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=159bp|location=Sequence derived from alignment at A-nodosum_M_contig9475:12349..12507- (Ascophyllum nodosum dioecious)
AATGTTCGTCATTATTTCTTGAGAAAGCTTGTCCGCCAGGGGGACATCAT
CGTATATCATGTTCCTTCTGAGTATCAACATGCGGATATATTGACGAAAG
TTTTAGCGTTTGACTTGTTCGCGATCCACCGGCGTTTCTTGACGAATCTT
AGCGATTAA
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