mRNA_A-nodosum_M_contig947.21.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig947.21.1
Unique NamemRNA_A-nodosum_M_contig947.21.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig947.21.1 vs. uniprot
Match: D7FVV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV8_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 4.300e-30
Identity = 88/212 (41.51%), Postives = 120/212 (56.60%), Query Frame = 3 
Query:   48 MRHRVALVVDKTMQNRLVKTEEDEIGKGQEGGSNGPAASKKQQQQVQDPTVAAYLQALQSAIMTKVESMCDVQDDHE-QPEAQLIREIIEFEEEISAARERLVATRARIARLAAEICRDSLRFSEAADDRAIINLEANIEQPRKEKDEGGTLLLLSDGPSDAVEDVAATT------------GVFAGIDGDVLEPKISLLIGKLSELPGPLK 644
            MR+RV+ VVD+T +  L             G  +G +A        QD    AYL+A Q+A+  KV  +C+VQD  E + E +L+ EI +F  ++ AAR RL ATRAR+ARL+A+ CRD+LR SEAADDRA   LEA+    R+E + GG L L  D  +                      G+F G++  V+EPK+S LIGK++ELPGPLK
Sbjct:    1 MRYRVSTVVDETTKKSLA------------GKKSGSSAGVAVVAPAQDAATTAYLRAFQAAVADKVRDLCEVQDARESREEDELVGEIFQFSHDLRAARSRLYATRARVARLSADTCRDALRVSEAADDRACAVLEASTAHARRESETGGPLPLRIDDAAXXXXXXXXXXXXXXXXXXXXXXGIFQGLETGVVEPKVSALIGKMAELPGPLK 200
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig947.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVV8_ECTSI4.300e-3041.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig947contigA-nodosum_M_contig947:212233..214295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2022
Hectar predicted targeting categoryother localisation
Exons2
Cds size681
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870447.2789028-UTR-A-nodosum_M_contig947:212232..2122791680870447.2789028-UTR-A-nodosum_M_contig947:212232..212279Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig947 212233..212279 +
1680870447.3108344-UTR-A-nodosum_M_contig947:213001..2142951680870447.3108344-UTR-A-nodosum_M_contig947:213001..214295Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig947 213002..214295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870447.2893047-CDS-A-nodosum_M_contig947:212279..2128751680870447.2893047-CDS-A-nodosum_M_contig947:212279..212875Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig947 212280..212875 +
1680870447.3007705-CDS-A-nodosum_M_contig947:212916..2130011680870447.3007705-CDS-A-nodosum_M_contig947:212916..213001Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig947 212917..213001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig947.21.1prot_A-nodosum_M_contig947.21.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig947 212280..213001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig947.21.1

>prot_A-nodosum_M_contig947.21.1 ID=prot_A-nodosum_M_contig947.21.1|Name=mRNA_A-nodosum_M_contig947.21.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=227bp
MRHRVALVVDKTMQNRLVKTEEDEIGKGQEGGSNGPAASKKQQQQVQDPT
VAAYLQALQSAIMTKVESMCDVQDDHEQPEAQLIREIIEFEEEISAARER
LVATRARIARLAAEICRDSLRFSEAADDRAIINLEANIEQPRKEKDEGGT
LLLLSDGPSDAVEDVAATTGVFAGIDGDVLEPKISLLIGKLSELPGPLKV
CSAGHSRAFGISSENGSDGRGNDDCP*
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mRNA from alignment at A-nodosum_M_contig947:212233..214295+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig947.21.1 ID=mRNA_A-nodosum_M_contig947.21.1|Name=mRNA_A-nodosum_M_contig947.21.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2063bp|location=Sequence derived from alignment at A-nodosum_M_contig947:212233..214295+ (Ascophyllum nodosum dioecious)
GTCGGGCGAAGCCGTTGGTCCCTGCGACAAGTACGGCATTGACGAAGATG
CGTCACAGAGTAGCCCTTGTCGTGGATAAAACCATGCAGAACAGGCTCGT
GAAAACTGAGGAAGATGAGATTGGCAAGGGTCAAGAAGGTGGGAGCAACG
GACCTGCTGCCAGCAAAAAGCAGCAGCAGCAGGTTCAAGACCCGACCGTA
GCGGCCTACCTCCAAGCACTCCAGTCTGCGATCATGACAAAAGTAGAGTC
CATGTGCGACGTGCAGGACGACCACGAGCAACCCGAGGCTCAGCTCATAC
GCGAGATTATTGAGTTCGAGGAAGAAATATCGGCCGCCAGGGAGAGGCTC
GTCGCCACTCGCGCGCGAATCGCGCGGCTAGCGGCCGAAATATGTAGAGA
TTCTCTGCGGTTCTCTGAGGCGGCGGACGACCGCGCCATCATCAATCTCG
AGGCCAACATCGAGCAACCCAGAAAGGAGAAAGACGAGGGGGGAACGCTC
CTCCTCCTGTCGGATGGGCCTTCGGATGCCGTCGAGGATGTTGCCGCCAC
CACGGGTGTGTTCGCAGGGATCGACGGCGACGTCCTCGAGCCTAAGATTT
CCTTGCTCATCGGGAAGCTCTCCGAGCTGCCGGGCCCCCTGAAGTCTGTT
CTGCAGGACATTCCCGAGCTTTCGGCATCTCTAGAGTCTGTTCTGCAGGA
CATTCCCGAGCTTTCGGCATCTCTAGCGAAAATGGTTCAGATGGTCGAGG
AAACGATGACTGTCCGTGAGAGCAGGACGGAGAAGTTGTTGGGTAAGGCG
CCGCCAACGCCGTTGCCGAAGGGTAACGCCGCTATGACCACTGGTTCTCG
ACATCCGCCAGAAGAAATGAGAGCGACGGCAAGAGGAGTACGGCTGAAGC
AGGCTAGGAAGGAGTGGGAGACGGCAGGAGCTGGCTTGCTGGGAAGAATG
TTCATCACTGGAGTGTAAATTAATCCGTGTGTTTTGGGCTTGCCCAAGAT
ACATAAACAGATAAGATATACTGTAGAAACATGCACATATTTTCTCTTTT
CGGGGGTACTTCACTAGTCTACTTGTTGGCCTCTTTTCCCTGTTCAGCAG
ACAAGAAATGAGATTATTGGTCAACGTGTACATGTTCTTCATAATATCCC
GGGTTGACAATCAACCAACACGCTGAATGTGAGGAAAAACGAAGCAAGAA
GGTTGGAATGCATGGTGTCGTTTCCTGCACGGTGCGGAGTCGCAAGGGTG
TCTGACACGATGTTGGGCTTGGTTTCGATTCAGCTTTCTTTGCAGAATTA
TGACCGGTGCCCGGTGACACTGTCCTTTCGCGACAGGGATGATGAGGGAG
AGGCGCGCGTTGATCGGTCGGAGCGCGGTTCATGACTAATAAGGATGATC
ACGCCTTGACGCTTGTGGCCTGATGTTTGAAAATCTGTTCGCGACGAGGC
TTCCCGTCCATCAGAACCTGCTTTTTCAACTGTTAATATCTTGTTATCAT
TACATAGCTCTATAATGTAGCAAGGGCAAGGATCAACCCGGTAAGATTGC
CAATTCTGCTCGTGGTCAGATGAGCAGGGAAGAAAATGGATTTTTCCCTG
TCCCCGTTCGCGCCTGAGAATTTGGTCTCGCGAGACGGGTTCGGCAGACC
CGCCCCGCGTCAGCTTGCTCATCTCCATACTCAGGCTGAATCAGCAGACG
GCCCCATCTTTTTTTCTGAAGAGTAAGAGCATGGAGGCCGACACACTTCA
ACATCCTGTCAGCGGCTGCGGCGACTGGAGCATTACTAGAGCAGTTGTGG
AGGTCGCCTTGGCACGCAGCACAACCCCCCGGTGATTTACTCTCGTTATT
CTCGCCATTATCGTGCTCCCGTTGTCGACAATTTATTACGCTTTTTGTTG
AGCAGTGCAGTCAGTATTGGTCGATAAGACAGATTAGATGGATGTAATTG
AGCCTACACGTCAGCTGCTCTTTTTGGTGGTTTGGCTCCCAAATCGACTC
ATTCCTAACATGCCTCGAAAGGTGTTCGTAGAAGATAACTATATATTTCC
AAGTGAAACGATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig947:212233..214295+

>mRNA_A-nodosum_M_contig947.21.1 ID=mRNA_A-nodosum_M_contig947.21.1|Name=mRNA_A-nodosum_M_contig947.21.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=681bp|location=Sequence derived from alignment at A-nodosum_M_contig947:212233..214295+ (Ascophyllum nodosum dioecious)
ATGCGTCACAGAGTAGCCCTTGTCGTGGATAAAACCATGCAGAACAGGCT
CGTGAAAACTGAGGAAGATGAGATTGGCAAGGGTCAAGAAGGTGGGAGCA
ACGGACCTGCTGCCAGCAAAAAGCAGCAGCAGCAGGTTCAAGACCCGACC
GTAGCGGCCTACCTCCAAGCACTCCAGTCTGCGATCATGACAAAAGTAGA
GTCCATGTGCGACGTGCAGGACGACCACGAGCAACCCGAGGCTCAGCTCA
TACGCGAGATTATTGAGTTCGAGGAAGAAATATCGGCCGCCAGGGAGAGG
CTCGTCGCCACTCGCGCGCGAATCGCGCGGCTAGCGGCCGAAATATGTAG
AGATTCTCTGCGGTTCTCTGAGGCGGCGGACGACCGCGCCATCATCAATC
TCGAGGCCAACATCGAGCAACCCAGAAAGGAGAAAGACGAGGGGGGAACG
CTCCTCCTCCTGTCGGATGGGCCTTCGGATGCCGTCGAGGATGTTGCCGC
CACCACGGGTGTGTTCGCAGGGATCGACGGCGACGTCCTCGAGCCTAAGA
TTTCCTTGCTCATCGGGAAGCTCTCCGAGCTGCCGGGCCCCCTGAAAGTC
TGTTCTGCAGGACATTCCCGAGCTTTCGGCATCTCTAGCGAAAATGGTTC
AGATGGTCGAGGAAACGATGACTGTCCGTGA
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