mRNA_A-nodosum_M_contig9373.2.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5K953_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K953_9PHAE) HSP 1 Score: 295 bits (754), Expect = 5.040e-85 Identity = 226/627 (36.04%), Postives = 295/627 (47.05%), Query Frame = 3
Query: 69 GVLRQGNSLYGPGVAPLKDIVKNYAALTGSHKALLASIQLVVFRGILSSVGAMLHFMKPVALNQMRRDVWGGLNDEDVLGRLKGYLQASSALSFAARGQQFTDEELRQLRIRAEDYVENARLTLGRSGVRTSTHNWIHWTDTILNHGAPLDASIGEQGHQRHKRSNKSGSGRDPAAHHARRVNTLLALRRLTNADE------S*RRPITITPRKNGYPRCSRGRRVHARPQITRWGSQGRV------------------GQSK------GPGRKSTTDDGHGAGNIPRFSPMEREDVGCICGGAAWDHNDRWRAGMGSVFS*KRDCASRGNCSGVGDVVVWLRPYSEQQNYL*RPEVSHLLGRQRPKQR*HTMLSVQARGAP*SQQRSGTLQGRGCAVCYLHRNYSTGLGSW*RVGRRCRDLYKPPGPRSWFVG*RWCHISEDLVLFRS----RRKQAGR*FTW------------------TRPYDGVRPRVRIRDTWKRKVETGRSCD*----PPHIL-------PSRSPTDKALCISRGAIRRHVHMFHMCPLGSFLAAASATSSVPQEMDAPLTCGLHSAANTKGGGKVWKHHYHLASAAQRKIQRDSYLLNEHWHSAFQDGV 1760
GV+RQ LYGPG PLKD +K+Y TGSHK L S+QL+VFRG+L+SVGAM H++ AL +VWG LNDE VL RL+ YLQASSAL+FAARGQ F+D +L +L +RA D VEN++LTLGR GV+T+ H W+H ++I HG P DA++GE GHQ HKRS KS S RDPAAHHARR NT LAL RLT+ + S +T + P C R + A R G G V G +K G G + ++DG G+ P E C+ G H FS R + +C+ + W E H S++AR S+ + G + S+GLG + + G + P PR W VG E + +F S R+ +G T D + V + + R + D P + L PS P D AIRRHVHM+H+CP+ F A+ TS++ + TCGL +T GG VWKHHY LA+A QRD+Y+LNEHW AFQDGV
Sbjct: 438 GVVRQRGGLYGPGALPLKDPIKDYTGYTGSHKGLFGSVQLIVFRGLLASVGAMRHYLSSNALRAQNIEVWGRLNDEGVLDRLRQYLQASSALTFAARGQVFSDSDLVELHVRAGDMVENSKLTLGREGVKTTMHQWLHVAESIRAHGRPQDANVGEAGHQTHKRSRKSSSNRDPAAHHARRTNTFLALHRLTSPEPYTANRYSYSSKTKVTEQVTSGPGCRRI--LAALGDRLRGGLNGVVDADASTTPTASMKDGKYQGSAKWQATILGGGDLACSEDGGGSVAAGAKEPWEV----CVSEGPVRPHAGAILRANAEWFSCGRSDGALDDCADARCPLCW--------------EGGH--------------ESLKARNISCSRFKHG-----------VPPKTSSGLGRF-KGGDVKKATATGPTPRHWCVG---DGRGESVEIFTSPEAKRKDLSGDGHVTLGLILYFFDLDGNPRPGPTAAADPMMEYVLVYEYVTRGAGRSKKADSVTLHPTYWLQGGGNRVPSVYPVD--------AIRRHVHMYHLCPVSHFEPRAANTSALAE------TCGLRD-DDTGKGGNVWKHHYILAAAKPPSGQRDAYMLNEHWRGAFQDGV 1000
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5JM61_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM61_9PHAE) HSP 1 Score: 260 bits (664), Expect = 1.250e-75 Identity = 138/276 (50.00%), Postives = 171/276 (61.96%), Query Frame = 1
Query: 685 REKTVTRDVHAGAGCTRVLKSLDGALRGGLDSPRDPDERARPTTAMARGTFHGSA---QWNARMLDVSVEGQRGITTTDGELE-WEACLAESGIVPHVETVLESATWWYGCDRTPNN-RTTCEDPRCPICWEGSG--LNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRDWAVGDGSGGDVEIFTSRRAHAAGLSVDGGVTLAKILYFFDHEGNKRAGNSHGQGPMMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPS 1491
++ +T + +G GC RVL++LD + GG+ + D E +PT AM G HGSA + A DV G T G E WEACL+E + P +L + T WY C R+ + R C++ RC CWEG G L NDDI C R KHGVP + SSGLGRFKGGDV++AT G TPRDWAVG G G VEIFT+ +A LS DG VTLA IL+FFDHEGN+R ++ GP ME+VL YE+VT G GRSK D VT HPTY+LQ + PS
Sbjct: 292 KKTKITETLTSGPGCQRVLQALDDSRSGGITNVVDGTEGTKPTAAMLAGQPHGSATSLRGGAAPNDVGT----GSTGGGGPREAWEACLSEGAVRPSAGAILNANTLWYACGRSDGDGRDVCKELRCSSCWEGGGKSLKNDDIICYRIKHGVPAKISSGLGRFKGGDVKAATAGGATPRDWAVGSGQGDAVEIFTNPKAKRDDLSGDGHVTLASILHFFDHEGNRRPDSAPDAGPAMEFVLAYEFVTCGSGRSKKADSVTQHPTYWLQRGVKQVPS 563
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: D7FZ46_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ46_ECTSI) HSP 1 Score: 262 bits (670), Expect = 1.310e-74 Identity = 136/294 (46.26%), Postives = 172/294 (58.50%), Query Frame = 1
Query: 685 REKTVTRDVHAGAGCTRVLKSLDGALRGGLDSPRDPDERARPTTAMARGTFHGSAQWNARML--DVSVEGQRGITTTDGELE----------------WEACLAESGIVPHVETVLESATWWYGCDRTPNN-RTTCEDPRCPICWEGSG--LNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRDWAVGDGSGGDVEIFTSRRAHAAGLSVDGGVTLAKILYFFDHEGNKRAGNSHGQGPMMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPSVFPV 1503
++ +T V +G GC RVL++LD +L GG+ + D E +PT AM G HGSA W A +L D + R + G WEACL++ + P +L + T WY C R+ + R C++ RC CWEG G L ND+I C R KHGVP + SSGLGRFKGGDV++AT G TPRDW G G G VEIFT+ A LS DG VTL +ILYFFD EGN+R + GP ME+VL YE+V G GRSK D VT HPTY+LQG + PSV+P+
Sbjct: 365 KKTMITETVTSGPGCQRVLQALDDSLSGGITNVVDGTEGTKPTAAMLAGQPHGSATWRATILRQDAAPNDVRAGSAGSGVAPXXXXXXXXXXGGPREAWEACLSKGAVRPSAGAILNANTLWYACGRSDGDGRDVCKELRCSSCWEGGGKSLKNDEIICHRIKHGVPAKISSGLGRFKGGDVKAATAGGATPRDWVAGSGQGDAVEIFTNPMAKRDDLSGDGHVTLGRILYFFDLEGNRRPDSIPDAGPAMEFVLAYEFVACGSGRSKKADSVTQHPTYWLQGGVKQVPSVYPI 658
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5K8R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R0_9PHAE) HSP 1 Score: 249 bits (637), Expect = 1.910e-73 Identity = 142/296 (47.97%), Postives = 176/296 (59.46%), Query Frame = 1
Query: 649 LTSPEGDPSRLLREKT---VTRDVHAGAGCTRVLKSLDGALRGGLDSPRDPDERARPTTAMARGTFHGSAQWNARMLD----VSVEGQRGITTTDGELEWEACLAES-GIVPHVETVLESATWWYGCDRTPNNRTT-CEDPRCPICWEGSG--LNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRDWAVGDGSGGDVEIFTSRRAHAAGLSVDGGVTLAKILYFFDHEGNKRAGNSHGQGPMMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPSVFPV 1503
LT+PE + T VT+ V +G+GC RVLK++ L+ G+ D PT A + GSA+W + +L V G + WEAC+A + GI P E +L +A WYGC + + C + RCP CWEG G L+N +I CSR KHGVP ++SSG+ FKGGDV++AT GT+PRDWAVG G G DVEIFT+ +A LS DGGVTL KILYFF+ N+R G S GP ME VLVYEYVT G GRSK D T HPTY+LQG T PS FPV
Sbjct: 31 LTTPEPHTATRYSYATKSKVTKTVTSGSGCQRVLKAVGSMLQVGMAHVEDATVGVVPTAAASTAQHQGSARWESSVLPDEPLVPNHSHLGSAGKGPKEPWEACMAGADGIRPRKERILAAARIWYGCGSGKGDLSAVCSELRCPCCWEGGGGKLDNSNISCSRIKHGVPAKSSSGMCYFKGGDVKAATNEGTSPRDWAVGAGGGQDVEIFTTPKAREDDLSGDGGVTLGKILYFFNVNLNRRPGCS-APGPAMECVLVYEYVTCGLGRSKKEDLATKHPTYWLQGGAATTPSDFPV 325
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5KMA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMA2_9PHAE) HSP 1 Score: 246 bits (628), Expect = 4.900e-72 Identity = 135/282 (47.87%), Postives = 169/282 (59.93%), Query Frame = 1
Query: 685 REKTVTRDVHAGAGCTRVLKSLDGALRGGLDSPRDPDERARPTTAMARGTFHGSAQWNARML--DVSVEGQ-RGITTTDGELE-WEACLAESGIVPHVETVLESATWWYGCDRTPNNRTTCEDPRCPICWEGSG---LNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRDWAVGDGSGGDVEIFTSRRAHAAGLSVDGGVTLAKILYFFDHEGNKRAGNSHGQGP--MMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPSVFPV 1503
++ +T V +G GC RVL++LD +L GG+ + D E +PT AM G HGSA W A +L D + + G T G E WEACL+E + P +L + T WY C R+ +G G L NDDI C R KHGVP SSGLGRFKGGDV++AT G TPR WAVG G G VEIFT+ +A LS DG VTLA+ILYFFDH+GN+R ++ GP ME+VL YE+VT G GRSK D VT HPTY+LQ + PSV+P+
Sbjct: 72 KKTKITETVTSGPGCQRVLQALDDSLSGGITNVVDGTEGTKPTAAMLAGQPHGSATWRATILRQDAAPDDVGTGSTGGGGPREAWEACLSEGAVRPSAGAILNANTLWYACGRS----------------DGDGRDSLKNDDIICYRIKHGVPAEISSGLGRFKGGDVKAATAGGATPRHWAVGSGQGDAVEIFTNHKAKRDDLSGDGHVTLARILYFFDHKGNRRPDSTPDAGPDSAMEFVLAYEFVTCGSGRSKKADSVTQHPTYWLQRGVKQVPSVYPI 337
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5K7Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z2_9PHAE) HSP 1 Score: 239 bits (611), Expect = 5.970e-71 Identity = 125/249 (50.20%), Postives = 151/249 (60.64%), Query Frame = 1
Query: 820 MARGTFHGSAQWNARML-------DVSVEGQRG----------ITTTDGELE-WEACLAESGIVPHVETVLESATWWYGCDRTPNN-RTTCEDPRCPICWEGSG--LNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRDWAVGDGSGGDVEIFTSRRAHAAGLSVDGGVTLAKILYFFDHEGNKRAGNSHGQGPMMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPSVFPV 1503
M G HGSA W A +L DV RG G E WEACL+E + P +L + T WY C R+ + R C++ RC CWEG G L NDDI C R KHGVP + SSGLGRFKGGDV++AT G TPRDWAVG G G VEIFT+ +A LS DG VTL++ILYF DHEGN+R ++ GP +E+VL YE+VT G GRSK D VT HPTY+LQG + PSV+P+
Sbjct: 1 MLAGQPHGSATWRATILRQDAAPDDVKAGSARGGXXXXXXXXXXXXXXGPREAWEACLSEDAVRPSAGAILNANTLWYACGRSDGDGRDVCKELRCSSCWEGGGKSLKNDDIICYRIKHGVPAKISSGLGRFKGGDVKAATAGGATPRDWAVGSGQGDAVEIFTNPKAKRDDLSGDGHVTLSRILYFVDHEGNRRPDSTPDAGPAVEFVLTYEFVTCGSGRSKKADSVTQHPTYWLQGGVKQVPSVYPI 249
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5K4J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J5_9PHAE) HSP 1 Score: 184 bits (467), Expect = 1.320e-48 Identity = 95/159 (59.75%), Postives = 108/159 (67.92%), Query Frame = 1
Query: 1033 CEDPRCPICWEGSG--LNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRDWAVGDGSGGDVEIFTSRRAHAAGLSVDGGVTLAKILYFFDHEGNKRAGNSHGQGPMMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPSVFPV 1503
C + RCP CWEG G L+N +I CSR KHGVP ++SSG+ KGGDV++AT G PRDWAVG G G DVEIFT+ +A LS G VTL KILY FD N+R G S P ME VLVYEYVTRG GRSK D T HP+Y+LQG T PSVFPV
Sbjct: 193 CSELRCPCCWEGGGGKLDNSNISCSRIKHGVPAKSSSGMCYSKGGDVKAATNEGANPRDWAVGAGGGQDVEIFTTPKAREDDLSGGGDVTLGKILYLFDLNLNRRPGCS-APDPAMECVLVYEYVTRGVGRSKKEDLATKHPSYWLQGGAATTPSVFPV 350
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5K8J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8J7_9PHAE) HSP 1 Score: 176 bits (445), Expect = 3.240e-45 Identity = 112/281 (39.86%), Postives = 149/281 (53.02%), Query Frame = 1
Query: 691 KTVTRDVHAGAGCTRVLKSLDGALRGGLDS-PRDPDERARPTTAMARGTFHGSAQWNARMLDVSVEGQRGITTTDGELEWEACLAESGIVPHVETVLESATWWYGCDRTPNNRTTCEDPRCPICW-EGSGLNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRDWAVGDGSGGDVEIFTSRR---------AHAAGLSVDGGVTLAKILYFFDHEGNKRAGNSHGQGPMMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPSVFP 1500
K V V AG+GC+ VL SL L GGL S P D + PT A F G+A W + + + G + G WE+ +A + P +T++ + ++ C R CE+PRC CW S L++ DI C+RFKHG P RA SGLGR+KG DVR++T T DW +G+G G DVE F + A A+GLS LA+ILY +H GN R G SH P+ +VL ++YV+ G G + D VT HP L+GR R P VFP
Sbjct: 130 KYVVETVKAGSGCSAVLWSLGNVLPGGLSSTPTDARAASTPTAAQRAAQFPGAATWTSVLWEAG--SPWGNDASGGG--WESRIATGPLRPDEKTLIGAYNTYFSCGRADGG-ALCEEPRCADCWLNSSTLDDKDIICTRFKHGAPLRAGSGLGRWKGDDVRASTRT-APGGDWWLGEGCGEDVEFFKEQPFDDDVHDGPAQASGLS------LARILYLLEHRGNTRQG-SHDH-PLTSWVLAFDYVSDGVGNQRSPDPVTLHPVLVLRGRRR--PVVFP 394
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5JRL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL1_9PHAE) HSP 1 Score: 157 bits (396), Expect = 8.670e-39 Identity = 103/270 (38.15%), Postives = 140/270 (51.85%), Query Frame = 1
Query: 709 VHAGAGCTRVLKSLDGALRGGLDS-PRDPDERARPTTAMARGTFHGSAQWNARMLDVSVEGQRGITTTDGELEWEACLAESGIVPHVETVLESATWWYGCDRTPNNRTTCEDPRCPICW-EGSGLNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRD-WAVGDGSGGDVEIFTSRRAHAAGLS--VDGGVTLAKILYFFDHEGNKRAGNSHGQGPMMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPSVFPV 1503
V GAGC R++ L L G D P D A T A +G F GSA W+A + + G+ +G W A ++ P ++ ++GC C + RCP CW E + L + I CSR+ VP AS G+GR +GGD ++A G PRD WA+G G G DVEIF +S VD +T++KI+YFFDH+GNK + + + P +VL Y+YV G G ++ D VT HPT LQGR R P V+PV
Sbjct: 79 VSPGAGCIRLMNYLAPTL--GHDRVPTDAHASAIQTPAQLKGQFPGSAVWSAHLFK-----EDGVPNVNGS--WSARISSGNFRPDEAALIRGYQRYFGCGGGDGG---CGNVRCPYCWDESTSLESTLIECSRYMR-VPQVASCGVGRLRGGDAKAAARVG--PRDDWALGQGQGNDVEIFNKPPPTGDDVSPSVDD-LTMSKIIYFFDHKGNKNSFSGEPR-PSTWWVLAYDYVGIGNGNERVPDSVTRHPTLSLQGRGR--PKVYPV 329
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5K1N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N3_9PHAE) HSP 1 Score: 154 bits (390), Expect = 3.570e-37 Identity = 103/282 (36.52%), Postives = 138/282 (48.94%), Query Frame = 1
Query: 688 EKTVTRDVHAGAGCTRVLKSLDGALRGGLDS-PRDPDERARPTTAMARGTFHGSAQWNARMLDVSVEGQRGITTTDGELEWEACLAESGIVPHVETVLESATWWYGCDRTPNNRTTCEDPRCPICW-EGSGLNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRDWAVGDGSGGDVEIFTSRR---------AHAAGLSVDGGVTLAKILYFFDHEGNKRAGNSHGQGPMMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPSVFP 1500
+K V V AG+GC+ VL+SL L GGL S P D + PT A F G+A W V E + G WE+ +A + P T++ + ++ C R CE+PRC CW S L++ DI C+RFKHG P RASSGLGR+KGGD+ G+G G DVE F + A A+GLS A+ILYF +H GN R G SH + P+ +VL ++YV G G + D T HP L+G + + P
Sbjct: 198 KKYVVETVKAGSGCSAVLRSLGDVLPGGLPSAPTDARAASTPTAAQRAAHFPGAASWTT----VLWEAESPRRNDAGGGGWESRIATGPLRPDERTLIGAYNTYFSCGRADGG-ALCEEPRCTDCWLNSSTLDDKDIVCTRFKHGAPLRASSGLGRWKGGDL---------------GEGCGEDVEFFKEQPFDNDVHDGPAQASGLS------SARILYFSEHTGNTRQG-SHDR-PLTSWVLAFDYVFDGVGNQRSPDPDTLHPILVLRGSTGRQMATHP 451 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig9373.2.1 >prot_A-nodosum_M_contig9373.2.1 ID=prot_A-nodosum_M_contig9373.2.1|Name=mRNA_A-nodosum_M_contig9373.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=301bp MLTSPEGDPSRLLREKTVTRDVHAGAGCTRVLKSLDGALRGGLDSPRDPDback to top mRNA from alignment at A-nodosum_M_contig9373:12122..16664+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig9373.2.1 ID=mRNA_A-nodosum_M_contig9373.2.1|Name=mRNA_A-nodosum_M_contig9373.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4543bp|location=Sequence derived from alignment at A-nodosum_M_contig9373:12122..16664+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig9373:12122..16664+ >mRNA_A-nodosum_M_contig9373.2.1 ID=mRNA_A-nodosum_M_contig9373.2.1|Name=mRNA_A-nodosum_M_contig9373.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=903bp|location=Sequence derived from alignment at A-nodosum_M_contig9373:12122..16664+ (Ascophyllum nodosum dioecious)back to top |