mRNA_A-nodosum_M_contig9373.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9373.2.1
Unique NamemRNA_A-nodosum_M_contig9373.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5K953_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K953_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 5.040e-85
Identity = 226/627 (36.04%), Postives = 295/627 (47.05%), Query Frame = 3
Query:   69 GVLRQGNSLYGPGVAPLKDIVKNYAALTGSHKALLASIQLVVFRGILSSVGAMLHFMKPVALNQMRRDVWGGLNDEDVLGRLKGYLQASSALSFAARGQQFTDEELRQLRIRAEDYVENARLTLGRSGVRTSTHNWIHWTDTILNHGAPLDASIGEQGHQRHKRSNKSGSGRDPAAHHARRVNTLLALRRLTNADE------S*RRPITITPRKNGYPRCSRGRRVHARPQITRWGSQGRV------------------GQSK------GPGRKSTTDDGHGAGNIPRFSPMEREDVGCICGGAAWDHNDRWRAGMGSVFS*KRDCASRGNCSGVGDVVVWLRPYSEQQNYL*RPEVSHLLGRQRPKQR*HTMLSVQARGAP*SQQRSGTLQGRGCAVCYLHRNYSTGLGSW*RVGRRCRDLYKPPGPRSWFVG*RWCHISEDLVLFRS----RRKQAGR*FTW------------------TRPYDGVRPRVRIRDTWKRKVETGRSCD*----PPHIL-------PSRSPTDKALCISRGAIRRHVHMFHMCPLGSFLAAASATSSVPQEMDAPLTCGLHSAANTKGGGKVWKHHYHLASAAQRKIQRDSYLLNEHWHSAFQDGV 1760
            GV+RQ   LYGPG  PLKD +K+Y   TGSHK L  S+QL+VFRG+L+SVGAM H++   AL     +VWG LNDE VL RL+ YLQASSAL+FAARGQ F+D +L +L +RA D VEN++LTLGR GV+T+ H W+H  ++I  HG P DA++GE GHQ HKRS KS S RDPAAHHARR NT LAL RLT+ +       S      +T +    P C R   + A     R G  G V                  G +K      G G  + ++DG G+       P E     C+  G    H           FS  R   +  +C+     + W              E  H               S++AR    S+ + G           +    S+GLG + + G   +     P PR W VG       E + +F S    R+  +G                       T   D +   V + +   R     +  D     P + L       PS  P D        AIRRHVHM+H+CP+  F   A+ TS++ +      TCGL    +T  GG VWKHHY LA+A     QRD+Y+LNEHW  AFQDGV
Sbjct:  438 GVVRQRGGLYGPGALPLKDPIKDYTGYTGSHKGLFGSVQLIVFRGLLASVGAMRHYLSSNALRAQNIEVWGRLNDEGVLDRLRQYLQASSALTFAARGQVFSDSDLVELHVRAGDMVENSKLTLGREGVKTTMHQWLHVAESIRAHGRPQDANVGEAGHQTHKRSRKSSSNRDPAAHHARRTNTFLALHRLTSPEPYTANRYSYSSKTKVTEQVTSGPGCRRI--LAALGDRLRGGLNGVVDADASTTPTASMKDGKYQGSAKWQATILGGGDLACSEDGGGSVAAGAKEPWEV----CVSEGPVRPHAGAILRANAEWFSCGRSDGALDDCADARCPLCW--------------EGGH--------------ESLKARNISCSRFKHG-----------VPPKTSSGLGRF-KGGDVKKATATGPTPRHWCVG---DGRGESVEIFTSPEAKRKDLSGDGHVTLGLILYFFDLDGNPRPGPTAAADPMMEYVLVYEYVTRGAGRSKKADSVTLHPTYWLQGGGNRVPSVYPVD--------AIRRHVHMYHLCPVSHFEPRAANTSALAE------TCGLRD-DDTGKGGNVWKHHYILAAAKPPSGQRDAYMLNEHWRGAFQDGV 1000          
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5JM61_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM61_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 1.250e-75
Identity = 138/276 (50.00%), Postives = 171/276 (61.96%), Query Frame = 1
Query:  685 REKTVTRDVHAGAGCTRVLKSLDGALRGGLDSPRDPDERARPTTAMARGTFHGSA---QWNARMLDVSVEGQRGITTTDGELE-WEACLAESGIVPHVETVLESATWWYGCDRTPNN-RTTCEDPRCPICWEGSG--LNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRDWAVGDGSGGDVEIFTSRRAHAAGLSVDGGVTLAKILYFFDHEGNKRAGNSHGQGPMMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPS 1491
            ++  +T  + +G GC RVL++LD +  GG+ +  D  E  +PT AM  G  HGSA   +  A   DV      G T   G  E WEACL+E  + P    +L + T WY C R+  + R  C++ RC  CWEG G  L NDDI C R KHGVP + SSGLGRFKGGDV++AT  G TPRDWAVG G G  VEIFT+ +A    LS DG VTLA IL+FFDHEGN+R  ++   GP ME+VL YE+VT G GRSK  D VT HPTY+LQ   +  PS
Sbjct:  292 KKTKITETLTSGPGCQRVLQALDDSRSGGITNVVDGTEGTKPTAAMLAGQPHGSATSLRGGAAPNDVGT----GSTGGGGPREAWEACLSEGAVRPSAGAILNANTLWYACGRSDGDGRDVCKELRCSSCWEGGGKSLKNDDIICYRIKHGVPAKISSGLGRFKGGDVKAATAGGATPRDWAVGSGQGDAVEIFTNPKAKRDDLSGDGHVTLASILHFFDHEGNRRPDSAPDAGPAMEFVLAYEFVTCGSGRSKKADSVTQHPTYWLQRGVKQVPS 563          
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: D7FZ46_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ46_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 1.310e-74
Identity = 136/294 (46.26%), Postives = 172/294 (58.50%), Query Frame = 1
Query:  685 REKTVTRDVHAGAGCTRVLKSLDGALRGGLDSPRDPDERARPTTAMARGTFHGSAQWNARML--DVSVEGQRGITTTDGELE----------------WEACLAESGIVPHVETVLESATWWYGCDRTPNN-RTTCEDPRCPICWEGSG--LNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRDWAVGDGSGGDVEIFTSRRAHAAGLSVDGGVTLAKILYFFDHEGNKRAGNSHGQGPMMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPSVFPV 1503
            ++  +T  V +G GC RVL++LD +L GG+ +  D  E  +PT AM  G  HGSA W A +L  D +    R  +   G                   WEACL++  + P    +L + T WY C R+  + R  C++ RC  CWEG G  L ND+I C R KHGVP + SSGLGRFKGGDV++AT  G TPRDW  G G G  VEIFT+  A    LS DG VTL +ILYFFD EGN+R  +    GP ME+VL YE+V  G GRSK  D VT HPTY+LQG  +  PSV+P+
Sbjct:  365 KKTMITETVTSGPGCQRVLQALDDSLSGGITNVVDGTEGTKPTAAMLAGQPHGSATWRATILRQDAAPNDVRAGSAGSGVAPXXXXXXXXXXGGPREAWEACLSKGAVRPSAGAILNANTLWYACGRSDGDGRDVCKELRCSSCWEGGGKSLKNDEIICHRIKHGVPAKISSGLGRFKGGDVKAATAGGATPRDWVAGSGQGDAVEIFTNPMAKRDDLSGDGHVTLGRILYFFDLEGNRRPDSIPDAGPAMEFVLAYEFVACGSGRSKKADSVTQHPTYWLQGGVKQVPSVYPI 658          
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5K8R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R0_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 1.910e-73
Identity = 142/296 (47.97%), Postives = 176/296 (59.46%), Query Frame = 1
Query:  649 LTSPEGDPSRLLREKT---VTRDVHAGAGCTRVLKSLDGALRGGLDSPRDPDERARPTTAMARGTFHGSAQWNARMLD----VSVEGQRGITTTDGELEWEACLAES-GIVPHVETVLESATWWYGCDRTPNNRTT-CEDPRCPICWEGSG--LNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRDWAVGDGSGGDVEIFTSRRAHAAGLSVDGGVTLAKILYFFDHEGNKRAGNSHGQGPMMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPSVFPV 1503
            LT+PE   +      T   VT+ V +G+GC RVLK++   L+ G+    D      PT A +     GSA+W + +L     V      G      +  WEAC+A + GI P  E +L +A  WYGC     + +  C + RCP CWEG G  L+N +I CSR KHGVP ++SSG+  FKGGDV++AT  GT+PRDWAVG G G DVEIFT+ +A    LS DGGVTL KILYFF+   N+R G S   GP ME VLVYEYVT G GRSK  D  T HPTY+LQG   T PS FPV
Sbjct:   31 LTTPEPHTATRYSYATKSKVTKTVTSGSGCQRVLKAVGSMLQVGMAHVEDATVGVVPTAAASTAQHQGSARWESSVLPDEPLVPNHSHLGSAGKGPKEPWEACMAGADGIRPRKERILAAARIWYGCGSGKGDLSAVCSELRCPCCWEGGGGKLDNSNISCSRIKHGVPAKSSSGMCYFKGGDVKAATNEGTSPRDWAVGAGGGQDVEIFTTPKAREDDLSGDGGVTLGKILYFFNVNLNRRPGCS-APGPAMECVLVYEYVTCGLGRSKKEDLATKHPTYWLQGGAATTPSDFPV 325          
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5KMA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMA2_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 4.900e-72
Identity = 135/282 (47.87%), Postives = 169/282 (59.93%), Query Frame = 1
Query:  685 REKTVTRDVHAGAGCTRVLKSLDGALRGGLDSPRDPDERARPTTAMARGTFHGSAQWNARML--DVSVEGQ-RGITTTDGELE-WEACLAESGIVPHVETVLESATWWYGCDRTPNNRTTCEDPRCPICWEGSG---LNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRDWAVGDGSGGDVEIFTSRRAHAAGLSVDGGVTLAKILYFFDHEGNKRAGNSHGQGP--MMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPSVFPV 1503
            ++  +T  V +G GC RVL++LD +L GG+ +  D  E  +PT AM  G  HGSA W A +L  D + +    G T   G  E WEACL+E  + P    +L + T WY C R+                +G G   L NDDI C R KHGVP   SSGLGRFKGGDV++AT  G TPR WAVG G G  VEIFT+ +A    LS DG VTLA+ILYFFDH+GN+R  ++   GP   ME+VL YE+VT G GRSK  D VT HPTY+LQ   +  PSV+P+
Sbjct:   72 KKTKITETVTSGPGCQRVLQALDDSLSGGITNVVDGTEGTKPTAAMLAGQPHGSATWRATILRQDAAPDDVGTGSTGGGGPREAWEACLSEGAVRPSAGAILNANTLWYACGRS----------------DGDGRDSLKNDDIICYRIKHGVPAEISSGLGRFKGGDVKAATAGGATPRHWAVGSGQGDAVEIFTNHKAKRDDLSGDGHVTLARILYFFDHKGNRRPDSTPDAGPDSAMEFVLAYEFVTCGSGRSKKADSVTQHPTYWLQRGVKQVPSVYPI 337          
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5K7Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z2_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 5.970e-71
Identity = 125/249 (50.20%), Postives = 151/249 (60.64%), Query Frame = 1
Query:  820 MARGTFHGSAQWNARML-------DVSVEGQRG----------ITTTDGELE-WEACLAESGIVPHVETVLESATWWYGCDRTPNN-RTTCEDPRCPICWEGSG--LNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRDWAVGDGSGGDVEIFTSRRAHAAGLSVDGGVTLAKILYFFDHEGNKRAGNSHGQGPMMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPSVFPV 1503
            M  G  HGSA W A +L       DV     RG               G  E WEACL+E  + P    +L + T WY C R+  + R  C++ RC  CWEG G  L NDDI C R KHGVP + SSGLGRFKGGDV++AT  G TPRDWAVG G G  VEIFT+ +A    LS DG VTL++ILYF DHEGN+R  ++   GP +E+VL YE+VT G GRSK  D VT HPTY+LQG  +  PSV+P+
Sbjct:    1 MLAGQPHGSATWRATILRQDAAPDDVKAGSARGGXXXXXXXXXXXXXXGPREAWEACLSEDAVRPSAGAILNANTLWYACGRSDGDGRDVCKELRCSSCWEGGGKSLKNDDIICYRIKHGVPAKISSGLGRFKGGDVKAATAGGATPRDWAVGSGQGDAVEIFTNPKAKRDDLSGDGHVTLSRILYFVDHEGNRRPDSTPDAGPAVEFVLTYEFVTCGSGRSKKADSVTQHPTYWLQGGVKQVPSVYPI 249          
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5K4J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J5_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.320e-48
Identity = 95/159 (59.75%), Postives = 108/159 (67.92%), Query Frame = 1
Query: 1033 CEDPRCPICWEGSG--LNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRDWAVGDGSGGDVEIFTSRRAHAAGLSVDGGVTLAKILYFFDHEGNKRAGNSHGQGPMMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPSVFPV 1503
            C + RCP CWEG G  L+N +I CSR KHGVP ++SSG+   KGGDV++AT  G  PRDWAVG G G DVEIFT+ +A    LS  G VTL KILY FD   N+R G S    P ME VLVYEYVTRG GRSK  D  T HP+Y+LQG   T PSVFPV
Sbjct:  193 CSELRCPCCWEGGGGKLDNSNISCSRIKHGVPAKSSSGMCYSKGGDVKAATNEGANPRDWAVGAGGGQDVEIFTTPKAREDDLSGGGDVTLGKILYLFDLNLNRRPGCS-APDPAMECVLVYEYVTRGVGRSKKEDLATKHPSYWLQGGAATTPSVFPV 350          
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5K8J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8J7_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 3.240e-45
Identity = 112/281 (39.86%), Postives = 149/281 (53.02%), Query Frame = 1
Query:  691 KTVTRDVHAGAGCTRVLKSLDGALRGGLDS-PRDPDERARPTTAMARGTFHGSAQWNARMLDVSVEGQRGITTTDGELEWEACLAESGIVPHVETVLESATWWYGCDRTPNNRTTCEDPRCPICW-EGSGLNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRDWAVGDGSGGDVEIFTSRR---------AHAAGLSVDGGVTLAKILYFFDHEGNKRAGNSHGQGPMMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPSVFP 1500
            K V   V AG+GC+ VL SL   L GGL S P D    + PT A     F G+A W + + +       G   + G   WE+ +A   + P  +T++ +   ++ C R       CE+PRC  CW   S L++ DI C+RFKHG P RA SGLGR+KG DVR++T T     DW +G+G G DVE F  +          A A+GLS      LA+ILY  +H GN R G SH   P+  +VL ++YV+ G G  +  D VT HP   L+GR R  P VFP
Sbjct:  130 KYVVETVKAGSGCSAVLWSLGNVLPGGLSSTPTDARAASTPTAAQRAAQFPGAATWTSVLWEAG--SPWGNDASGGG--WESRIATGPLRPDEKTLIGAYNTYFSCGRADGG-ALCEEPRCADCWLNSSTLDDKDIICTRFKHGAPLRAGSGLGRWKGDDVRASTRT-APGGDWWLGEGCGEDVEFFKEQPFDDDVHDGPAQASGLS------LARILYLLEHRGNTRQG-SHDH-PLTSWVLAFDYVSDGVGNQRSPDPVTLHPVLVLRGRRR--PVVFP 394          
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5JRL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL1_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 8.670e-39
Identity = 103/270 (38.15%), Postives = 140/270 (51.85%), Query Frame = 1
Query:  709 VHAGAGCTRVLKSLDGALRGGLDS-PRDPDERARPTTAMARGTFHGSAQWNARMLDVSVEGQRGITTTDGELEWEACLAESGIVPHVETVLESATWWYGCDRTPNNRTTCEDPRCPICW-EGSGLNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRD-WAVGDGSGGDVEIFTSRRAHAAGLS--VDGGVTLAKILYFFDHEGNKRAGNSHGQGPMMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPSVFPV 1503
            V  GAGC R++  L   L  G D  P D    A  T A  +G F GSA W+A +       + G+   +G   W A ++     P    ++     ++GC         C + RCP CW E + L +  I CSR+   VP  AS G+GR +GGD ++A   G  PRD WA+G G G DVEIF         +S  VD  +T++KI+YFFDH+GNK + +   + P   +VL Y+YV  G G  ++ D VT HPT  LQGR R  P V+PV
Sbjct:   79 VSPGAGCIRLMNYLAPTL--GHDRVPTDAHASAIQTPAQLKGQFPGSAVWSAHLFK-----EDGVPNVNGS--WSARISSGNFRPDEAALIRGYQRYFGCGGGDGG---CGNVRCPYCWDESTSLESTLIECSRYMR-VPQVASCGVGRLRGGDAKAAARVG--PRDDWALGQGQGNDVEIFNKPPPTGDDVSPSVDD-LTMSKIIYFFDHKGNKNSFSGEPR-PSTWWVLAYDYVGIGNGNERVPDSVTRHPTLSLQGRGR--PKVYPV 329          
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Match: A0A6H5K1N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N3_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 3.570e-37
Identity = 103/282 (36.52%), Postives = 138/282 (48.94%), Query Frame = 1
Query:  688 EKTVTRDVHAGAGCTRVLKSLDGALRGGLDS-PRDPDERARPTTAMARGTFHGSAQWNARMLDVSVEGQRGITTTDGELEWEACLAESGIVPHVETVLESATWWYGCDRTPNNRTTCEDPRCPICW-EGSGLNNDDIRCSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRDWAVGDGSGGDVEIFTSRR---------AHAAGLSVDGGVTLAKILYFFDHEGNKRAGNSHGQGPMMEYVLVYEYVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPSVFP 1500
            +K V   V AG+GC+ VL+SL   L GGL S P D    + PT A     F G+A W      V  E +       G   WE+ +A   + P   T++ +   ++ C R       CE+PRC  CW   S L++ DI C+RFKHG P RASSGLGR+KGGD+               G+G G DVE F  +          A A+GLS       A+ILYF +H GN R G SH + P+  +VL ++YV  G G  +  D  T HP   L+G    + +  P
Sbjct:  198 KKYVVETVKAGSGCSAVLRSLGDVLPGGLPSAPTDARAASTPTAAQRAAHFPGAASWTT----VLWEAESPRRNDAGGGGWESRIATGPLRPDERTLIGAYNTYFSCGRADGG-ALCEEPRCTDCWLNSSTLDDKDIVCTRFKHGAPLRASSGLGRWKGGDL---------------GEGCGEDVEFFKEQPFDNDVHDGPAQASGLS------SARILYFSEHTGNTRQG-SHDR-PLTSWVLAFDYVFDGVGNQRSPDPDTLHPILVLRGSTGRQMATHP 451          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9373.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K953_9PHAE5.040e-8536.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM61_9PHAE1.250e-7550.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FZ46_ECTSI1.310e-7446.26Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5K8R0_9PHAE1.910e-7347.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMA2_9PHAE4.900e-7247.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z2_9PHAE5.970e-7150.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4J5_9PHAE1.320e-4859.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8J7_9PHAE3.240e-4539.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL1_9PHAE8.670e-3938.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1N3_9PHAE3.570e-3736.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9373contigA-nodosum_M_contig9373:12122..16664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1760
Hectar predicted targeting categoryother localisation
Exons4
Cds size903
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9373.2.1prot_A-nodosum_M_contig9373.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9373 15550..16452 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870422.7526574-UTR-A-nodosum_M_contig9373:12121..123481680870422.7526574-UTR-A-nodosum_M_contig9373:12121..12348Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9373 12122..12348 +
1680870422.7631-UTR-A-nodosum_M_contig9373:12606..127951680870422.7631-UTR-A-nodosum_M_contig9373:12606..12795Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9373 12607..12795 +
1680870422.7729769-UTR-A-nodosum_M_contig9373:13070..131611680870422.7729769-UTR-A-nodosum_M_contig9373:13070..13161Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9373 13071..13161 +
1680870422.7866106-UTR-A-nodosum_M_contig9373:15411..155491680870422.7866106-UTR-A-nodosum_M_contig9373:15411..15549Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9373 15412..15549 +
1680870422.8120399-UTR-A-nodosum_M_contig9373:16452..166641680870422.8120399-UTR-A-nodosum_M_contig9373:16452..16664Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9373 16453..16664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870422.8012407-CDS-A-nodosum_M_contig9373:15549..164521680870422.8012407-CDS-A-nodosum_M_contig9373:15549..16452Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9373 15550..16452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9373.2.1

>prot_A-nodosum_M_contig9373.2.1 ID=prot_A-nodosum_M_contig9373.2.1|Name=mRNA_A-nodosum_M_contig9373.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=301bp
MLTSPEGDPSRLLREKTVTRDVHAGAGCTRVLKSLDGALRGGLDSPRDPD
ERARPTTAMARGTFHGSAQWNARMLDVSVEGQRGITTTDGELEWEACLAE
SGIVPHVETVLESATWWYGCDRTPNNRTTCEDPRCPICWEGSGLNNDDIR
CSRFKHGVPPRASSGLGRFKGGDVRSATCTGTTPRDWAVGDGSGGDVEIF
TSRRAHAAGLSVDGGVTLAKILYFFDHEGNKRAGNSHGQGPMMEYVLVYE
YVTRGKGRSKLGDHVTDHPTYFLQGRPRTKPSVFPVGRSGDMSTCFTCVR
*
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mRNA from alignment at A-nodosum_M_contig9373:12122..16664+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9373.2.1 ID=mRNA_A-nodosum_M_contig9373.2.1|Name=mRNA_A-nodosum_M_contig9373.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4543bp|location=Sequence derived from alignment at A-nodosum_M_contig9373:12122..16664+ (Ascophyllum nodosum dioecious)
AACCATCTGAGTCTTGTACATACTTTTTTCATAGGCCTGCTTTCGCCACA AGGTCGGGCGCACGTCTCGGAGTGCTTCGGCAGGGGAATAGTCTATACGG CCCAGGAGTTGCACCTTTAAAGGATATCGTCAAGAACTACGCAGCTCTTA CCGGTTCGCACAAGGCTCTTCTCGCGTCGATTCAGCTCGTCGTGTTCCGA GGAATACTTTCTTCCGTTGGAGCCATGGTGAGGGAGATACGAGCTTGACT CTATTTTCACCATGGGCTTAGACAATGACTAGAAAAACAGCTAAAATCTT AACATCTTACATGTTTCAAAACTTTCAAGGGATATTTCCTTGCTAAGCGA GCCACAGCAGCGACACAGGTAATAATGTGCTTCCTCGCAGAGTGGTGACA CCATCTCTATATCGACCGTGCGCTAGTTTGTAGTCGCACAGTCTCATGCC TCTGCTCTCGTCTGACCTATTCTTAATCCGCATAGCTTCATTTCATGAAG CCCGTGGCTCTAAATCAGATGCGTCGGGATGTGTGGGGAGGTTTGAACGA CGAGGACGTGCTCGGGCGATTGAAGGGGTATCTTCAGGCGTCATCTGCTC TCTCTTTCGCGGCCCGGGGCCAGCAGTTCACGGATGAAGAACTCCGTCAG CTGCGAATCAGGGCAGAGGACTACGTAAGCCTCTAGTACGTTGCACACCA TTTTACTTCCGAGCGCGGACATCAGCTAGTTTGTAGCAAGGTTTGTTTTG ATAGTTCAATACTCGTCTATATGTCGCGTGTTAAGAGACTTCGTCGTTAA ACTCTCCCGCCGCGTATATCACCGTCGTCCATTCGGCGAAGTGTATTTTC TTCTCAACTAAAAAGAGAGCACCATTTTTTGCTCCCGGAACTTTGGCGCA TATGGTTGCCGTACTAACCAATATTTTTCGCGATCTGGTTCCATTGCAGG TTGAAAATGCGAGACTAACACTCGGCCGGTCGGGCGTGAGAACAAGCACA CACAATTGGATCCACTGGACGGACACTATCCTCAATCACGGTGTGTACAT GGCCTTGCAACGCTGTTTATTTTTCTGTGAACGAACCATTGAAGTGACGG ATCAGCGGATCGTTAACGATGACAGTCGCTGTAATATTCATGCAGTATAA AGTGAAGAACATAAACCCTTCTCACTTGTTCGTATCTTTCGACTCCACGG TTGTGTTGAGTCGAGTAGAGTATTTAGAGTAGAGTATTGAAAGCGGTACT CAAGCTTTGAGTATTTTGAGTCGAGTATGGAAAGTTGTACTCAAGCTTTG AGTATTTTGAGTCGAGTATGGAAAGTTGTACTCAAGCTTTGAGTATTTTG AGTCGAGTATGGAAAGTCATACTCGATACTCGACTCATCGTTGAGTATTT TGCCCGATACCGTACTCATACTCGAGTAGAGTATGGAAAGTTGTACTCAA GCTATGAGTATGTTGAGTCGAGTATGGGAAGTTGTACTCAAGCTTTGAGT ATTTTGAGTCGAGTATGGGAAGTTGTACTCAAGCTTTGAGTATTTTGAGT CGAGTATGGAAAGTCATACTCGATACTCGACTCATCGTTGAGTTTTTGCC CGATACCGTACTCATACTCGAGTAGAGTATGGAAAGCGGTACTCAAGCTT TGAGTATTTTGAGTCGAGTATGGAAAGCGGTACTCAAGCTATGAGTATTT TGAGTAGAGTATGGAAAGCGGTACTCAAGCTATGAGTATGTTGAGTCGAG TACATACTCGAGTAGAATACTCGAGTAGTTGAGTAGTACTTTTCTCACCA CAACCTAAAAAACTAAAAATTAAACTACATATCACCCTACTTCAATTCAC CCCCTGCATTTTCACCCGCCCTCCCCGTTGGTCATAGCGGTGAAAGGCTG AACGCTGCACCCTGGTCGGTTGTCAACCGCCACCGATGGCCTGTTTGCAA GCACTCGCACTAATCACTAATATATAGCAAAAGAGATATAAAAACCAAAA TACTATACTTTCTATGGTAGTAATTTTGATATTGCACGACCGCAAAAGCA GTACGAAACAAAAAACAAAACAACTAGCTGCCCTACGCATGTCCTAGTTG ATGTCTATGCCACTGGGAGTGGGAGGCGCGTTGTTGACCAGCGGGTCAAT CGACGCCTCTGCGTCCAGAGCGTCCAGAAGATCCTTGTCCTGTCCGTCGA ACCTCGCAGGGAGGTGATTGCGGATGTCCTCCGATGCGATCTGGGGGATG TCCTTGTACGCCGGAATGGAGCTGTAGTTCGCCTTCAGGAACATCACCAT TTCCACTCAGTAATGTCGGGAGAAGCCCACCGTTATACTGTACACTTACA TTAATCGCCATGCAGGGACAACAAAAGAAAAGAAAAGAAAGATGTTGTTG TTGTTTTTCACATTCAGCGTATTGGTTGCCAACCCGAAAAAACTACTTTA CACAATGTCTGGGTACAAAATGCCCCGCAAAATGACGTCACGAAGACGAA GACATGTACTCAAACTTGAGTAGAGTATTGAGTACTTTGAGTCGAGTATG GAAAGTCATACTCAAGCTTTGAGTATTTTGAGTCGAGTATGGAAAGTCAT ACTCGATACTCGACTCATCGTTGAGTATTTGCCCGATACCGTACTCATAC TCGAGTAGAGTATGGAAAGTTGTACTCAAGCTATGAGTATGTTGAGTCGA GTATGGGAAGTTGTACTCAAGCTTTGAGTATTTTGAGTCGAGTATGGGAA GTTGTACTCAAGCTTTGAGTATTTTGAGTCGAGTATGGAAAGTCATACTC GATACTCGACTCATCGTTGAGTATTTGCCCGATACCGTACTCATACTCGA GTAGAGTATGGAAAGCGGTACTCAAGCTTTGAGTATTTTGAGTCGAGTAT GGAAAGCGGTACTCAAGCTATGAGTATGTTGAGTAGAGTATGGAAAGTGG TACTCAAGCTATGAGTATGTTGAGTCGAGTACATACTCGAGTAGAATACT CGAGTACGCCATGAGTAGTACTCGACTCAACACAAATTTGTTCGACTCCT TGTTTATTCCGCCTGTTATTATGGGAAACTATACAGCACGATGAATAGCA GCTGCGTTAGGTAGTCCGCTGTGTAGTACTACAGATGTGCGCGGTCATAT AATACTTTTTCATATCATTGTTTTTGTATTTCAGCAATGACCGTATTCGA TGTATCTATAGTATCCGCTCGTTGATTTTACAACTAAACGTCTCGAACAT CACTTTTTGATGTGCCTTCCGATATGAGTGCGTTCCCCAGGCGCCCCACT GGATGCATCCATTGGTGAGCAAGGTCACCAACGACATAAAAGATCGAACA AATCGGGTAGCGGGCGCGATCCGGCCGCGCATCATGCCCGGAGAGTCAAC ACGTTGTTGGCTTTGCGGCGGTTGACAAATGCTGACGAGTCCTGAAGGCG ACCCATCACGATTACTCCGCGAAAAAACGGTTACCCGCGATGTTCACGCG GGCGCCGGGTGCACGCGCGTCCTCAAATCACTAGATGGGGCTCTCAGGGG CGGGTTGGACAGTCCAAGGGACCCGGACGAAAGAGCACGACCGACGACGG CCATGGCGCGGGGAACATTCCACGGTTCAGCCCAATGGAACGCGAGGATG TTGGATGTATCTGTGGAGGGGCAGCGTGGGATCACAACGACAGATGGCGA GCTGGAATGGGAAGCGTGTTTAGCTGAAAGCGGGATTGTGCCTCACGTGG AAACTGTTCTGGAGTCGGCGACGTGGTGGTATGGCTGCGACCGTACTCCG AACAACAGAACTACTTGTGAAGACCCGAGGTGTCCCATTTGCTGGGAAGG CAGCGGCCTAAACAACGATGACATACGATGCTCTCGGTTCAAGCACGGGG TGCCCCCTAGAGCCAGCAGCGGTCTGGGACGCTTCAAGGGCGGGGATGTG CGGTCTGCTACCTGCACAGGAACTACTCCACGGGACTGGGCAGTTGGTGA CGGGTCGGGAGGAGATGTAGAGATCTTTACAAGCCGCCGGGCCCACGCAG CTGGTTTGTCGGTTGACGGTGGTGTCACATTAGCGAAGATCTTGTACTTT TTCGATCACGAAGGAAACAAGCGGGCCGGTAATTCACATGGACAAGGCCC TATGATGGAGTACGTCCTCGTGTACGAATACGTGACACGTGGAAAAGGAA GGTCGAAACTGGGAGATCATGTGACTGACCACCCCACATACTTCCTTCAA GGTCGCCCACGGACAAAGCCCTCTGTATTTCCCGTGGGGCGATCCGGCGA CATGTCCACATGTTTCACATGTGTCCGCTAGGGAGCTTTCTTGCAGCTGC ATCGGCCACCTCATCAGTACCGCAGGAGATGGACGCGCCATTGACGTGCG GGCTACATAGTGCAGCAAACACGAAGGGAGGTGGCAAGGTGTGGAAGCAC CATTACCACCTCGCTTCTGCAGCCCAGAGGAAGATACAGAGAGACTCTTA CTTGTTGAACGAGCATTGGCACAGCGCCTTCCAGGATGGAGTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9373:12122..16664+

>mRNA_A-nodosum_M_contig9373.2.1 ID=mRNA_A-nodosum_M_contig9373.2.1|Name=mRNA_A-nodosum_M_contig9373.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=903bp|location=Sequence derived from alignment at A-nodosum_M_contig9373:12122..16664+ (Ascophyllum nodosum dioecious)
ATGCTGACGAGTCCTGAAGGCGACCCATCACGATTACTCCGCGAAAAAAC
GGTTACCCGCGATGTTCACGCGGGCGCCGGGTGCACGCGCGTCCTCAAAT
CACTAGATGGGGCTCTCAGGGGCGGGTTGGACAGTCCAAGGGACCCGGAC
GAAAGAGCACGACCGACGACGGCCATGGCGCGGGGAACATTCCACGGTTC
AGCCCAATGGAACGCGAGGATGTTGGATGTATCTGTGGAGGGGCAGCGTG
GGATCACAACGACAGATGGCGAGCTGGAATGGGAAGCGTGTTTAGCTGAA
AGCGGGATTGTGCCTCACGTGGAAACTGTTCTGGAGTCGGCGACGTGGTG
GTATGGCTGCGACCGTACTCCGAACAACAGAACTACTTGTGAAGACCCGA
GGTGTCCCATTTGCTGGGAAGGCAGCGGCCTAAACAACGATGACATACGA
TGCTCTCGGTTCAAGCACGGGGTGCCCCCTAGAGCCAGCAGCGGTCTGGG
ACGCTTCAAGGGCGGGGATGTGCGGTCTGCTACCTGCACAGGAACTACTC
CACGGGACTGGGCAGTTGGTGACGGGTCGGGAGGAGATGTAGAGATCTTT
ACAAGCCGCCGGGCCCACGCAGCTGGTTTGTCGGTTGACGGTGGTGTCAC
ATTAGCGAAGATCTTGTACTTTTTCGATCACGAAGGAAACAAGCGGGCCG
GTAATTCACATGGACAAGGCCCTATGATGGAGTACGTCCTCGTGTACGAA
TACGTGACACGTGGAAAAGGAAGGTCGAAACTGGGAGATCATGTGACTGA
CCACCCCACATACTTCCTTCAAGGTCGCCCACGGACAAAGCCCTCTGTAT
TTCCCGTGGGGCGATCCGGCGACATGTCCACATGTTTCACATGTGTCCGC
TAG
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