mRNA_A-nodosum_M_contig926.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig926.3.1
Unique NamemRNA_A-nodosum_M_contig926.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig926.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig926contigA-nodosum_M_contig926:114230..117823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size266
Hectar predicted targeting categoryother localisation
Exons2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870397.3498402-CDS-A-nodosum_M_contig926:114229..1143081680870397.3498402-CDS-A-nodosum_M_contig926:114229..114308Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig926 114230..114308 +
1680870397.3636494-CDS-A-nodosum_M_contig926:117637..1178221680870397.3636494-CDS-A-nodosum_M_contig926:117637..117822Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig926 117638..117822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig926.3.1prot_A-nodosum_M_contig926.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig926 114230..117822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig926.3.1

>prot_A-nodosum_M_contig926.3.1 ID=prot_A-nodosum_M_contig926.3.1|Name=mRNA_A-nodosum_M_contig926.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=88bp
LDRGHRWRDCSGIEDKHPTDQKLELAVMPRSEVCADYRSRTSCSSSNGKR
MSTLLRQHYLEIHKMRLENNTCTAMVRTLSKPGLERVT
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mRNA from alignment at A-nodosum_M_contig926:114230..117823+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig926.3.1 ID=mRNA_A-nodosum_M_contig926.3.1|Name=mRNA_A-nodosum_M_contig926.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3594bp|location=Sequence derived from alignment at A-nodosum_M_contig926:114230..117823+ (Ascophyllum nodosum dioecious)
CTGGATCGTGGGCACCGATGGCGAGATTGCTCAGGCATAGAAGACAAGCA
TCCGACTGACCAAAAGCTAGAGCTAGCAGGTGAAGCAGGAGTACACCACA
AGTACTCGAACCTTTGACTCGGGGCTCGCATGTTGCAGCACTTATGTTAA
TGTAATGGTAGTCTAGTAGGTAACCTGCACACCTGCTAGTGCGGAAGTCG
TGAGTTCGATTCTTACCAAAGTAGGATTTGTGTTCTTTCTTTCGTAACGG
AAAGCGTGGGAACGTGAGTAACTAAAATTCAACCATTGGTTGACGAGTTG
TAAGAGTGATGAACTTGCATCGCGATAAAAATTCGTAAGGCGTGAACCGG
GGAGAGATGGGAAGATCCTTTGTGACCACAGGCAGGATGGTAATGATAAG
GTCCATCGGCTATAAGTGAGATTAAAAATAAAAATAAAATAAATAAATAC
ATTGTACCATGCAGTATCGTTATATAAGTATTCCCCCCTTTCGAGAGTAG
TATTGTTACTTAGCGTAGTGCGGGATAAATATTCTCGGACCTCAGCAGAA
CCACCTTTCTATTCCGTCATAATAGCTACAAGTGTTTGTTTATGGTCACT
GCTTGTTGTTGTTGTCAACGTTTTTTCTGTGTTTGGTGTGTCCTCCAATC
TGAATGACTCTCATTTACAGAAGAACATGGATCATGAGAATCAGGGCTTT
TGCAATTTCAATATAAATTTCAGGTTGTTCTGACATAATTTCTGACTCTG
TATTAGAGGTTGTTGTTGTTGTTGGACATATGCTGTTTGCGTAGGAACGT
ATCTCTCGATACATCGTTAAAGACGCTCCAGGGGTCACAACAGTAGAAAG
GAATCCTTCACTGTTCTTAAATTTTTATCGCGAGAAGGGTCCGGCCCTCC
CTATCCCTCGTCGATGTTGAGGTCGACATTGCTgGAGTAGCGTCGCGTCT
CCGGGAAATCAATCGCTGTATCAATCAATTTCATCAATCATGGTATCAAT
CAAATTATTCAGGCTGTGACGGGCACCCCTCTATCACCATTCATCGTTTA
TTGTATCTTACAGGTCTTTCAGGTTGTGACTGGGCTGGGCGTGCAAACCT
TCCACGAAGATTGTCTGCCCAAGGCGACTTAAAGTAGGCATACGTATCGT
AAAGTGAAGCAACTAGATAACAAATGTTACCAAAGTTGGTACAAAATAAT
AAATACCTGGTACATGTTTCTGTTTGATCTACTCGCTCGATTAGAGATAT
ATTTCTATAAATACAGTAGACGATTACTGCTAGTAACAGTGTAGTACAGT
AGTATAGTAGTACTGTAGTACAGTACAGTATATGGGGGGGAGTTGGGGGG
AACAAGTGATTAATTCCCAAGGCTTGGATTTTGCCGTGCTAGTGTACGCG
TCGCAATACTACGGTATACTACTATAAAGTGTGTTGGTACTGTAGAGTGC
CTGGTACGGCGTGCTGTTGCGGCAAATTACTTTTATGGACTATCCTGATG
TACTTTACTTCTACGTAGCAGTCGTTGGTGGGTTACGTGTTTTGGATAAT
TTGGGGGTATATCCTTGGCATAGAGCGCGAGCGTGTTTCACTTGGGATTT
ACCTATTTGCAGTCCATGGGCTTTCAGAGAGAACCACAGTCCAAACATCA
TCTATACTGTGAACAGGAGAAACCAGCCCACTGCCATGGATCTTTACTTC
TTAGATTGGGTACGCACCAGATACAAAACCGAACCAGAGCACGCACACAA
AATCAGCTCACACGGTACTATTAAATAGGCGCTCCCTTTCACTTGTGCTC
TTATAATAAATACTATTAATACTATATAATAGTATTAATACCAGGTACCA
ATATTAATAGTATTATTAGTATCATTGGTATTAGTACACAAGAAACGATG
GCTATGTTTGTTGAGGCGACCCGCAGGGCGTACGCATGGAGTTGTGTACC
GTTGTGGTTGTATCACCGTTGTAAAATCGCGATCTCGACAGATTTCTATC
GAACTGTCTAACAAAAAATATCCAATCAAAACGAGAGCACAAGTGGTGTA
GGTCTCGAGAGCAGTCACAACCTGAAAGTGCTGTGGAGCCTATGCATCCC
GCCCCAGCCTCCGCCCAAATCTTGAGCCTCCCCCTATGTGGACCGCGGAT
TTCACACGCCTTGAAAGCACCAAAACACACAAAAAACATTTGGCTTAGAG
TATTTGCAGAAAAATCTGAACGCATTTCAACCGTCCGGGGGAAAAATCGT
GTCAAAAAGTTGTTGGGAACATTATTTGACTGATTTCAACTAGAACTGCT
AATGTAGTCTATTCGTTGGGTTCCCCAATGTTGGATGTATACCCAACAGT
ATAATATATAATATCGGGTACTGTTGAGAGACCCACCGTCATACTTTTTT
TTTCTTTTTTTCTTTAATCTCACTTATAGCCGATGGACCTCATCATTACC
ATCCTGCCTGTGGTCACAAAGGATCTTCCCATCTCTCCCCGGTTCACGCT
TTACATTTTTTTTATCGCGATGCAAGTTCAGCACTTTACAACTCGTCAAC
CAATGGTTGAATTTTACTTACTCACGTTCCCACGCTTTCCGTTACGAAAG
AAAGAACGCAAATCTTACTTTGGTAAGAATCGAACTTACGACTTCCGTAC
TAGCAGGTGTGCAGGTTACCTACTGGACCACTCGGGCGACGAGGGTGTAA
ACTTACATTACACAATGGCCATGTGGATACACCAAAAACTAGAGAGATGA
GAGGATCCTTAGTGGCCACAGGCAGGATGTCAACGTTGCAGTAGATAAGA
TTGATATCTAGAACGTTGAGGCCCATCGACCGTAAGTGAGATACAAACAA
AACAAAAATAACTTTATAAAACTTATTGTGTTCTATATTACTAGGCGTTT
GGGTTAGAACGCAAAGCATTGATTGGCAAAACTAGGGATGGTTGTTGAGT
AATTATCAGGTTCTTAGGTAGTTAGGTTGTATAGTTACTGTTTTCTATCA
TCATTATAGATAGACTATGATTACTGTACCGTAGAACCTGCACCTGAGAC
CCAGCCAAGTCGACACCTATACTGCCACTCCCAGGTATATCAAATCACCA
TTCATGTTAACGTACTTGAATGGAATAGAGAGGTATAATCAATTGTAGTG
TTTGAAGATCTCCACCCGTTGGACATTTTTTTTTTTTTTTTTTTTTTTTT
TTTAGTGAGAAAAATCCCGTTTGCCGGGGTCGAACTCACGTCCCAACGTG
TCAGAGGGTTACGAGGTACCTCTGAGCTACCGGGGCGACCGGTGTACAGC
GTAATTTAGGTTCCCCCCATGTCATTTACCGGCCAGCCGTGTGCAACCAC
TACACTCAACTCCGGCTTACATCCCCACTTGCCCTCTTCACTTTAACACC
TTCAACAGTAATGCCCCGTTCTGAAGTGTGTGCTGACTACCGGTCGAGAA
CCTCGTGCAGTAGCAGCAATGGCAAGCGTATGTCCACGCTTCTACGGCAG
CACTACCTAGAAATCCACAAGATGCGGCTCGAAAACAACACGTGCACGGC
GATGGTGCGTACGTTGAGTAAACCTGGCCTCGAGCGCGTCACCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig926:114230..117823+

>mRNA_A-nodosum_M_contig926.3.1 ID=mRNA_A-nodosum_M_contig926.3.1|Name=mRNA_A-nodosum_M_contig926.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at A-nodosum_M_contig926:114230..117823+ (Ascophyllum nodosum dioecious)
CTGGATCGTGGGCACCGATGGCGAGATTGCTCAGGCATAGAAGACAAGCA
TCCGACTGACCAAAAGCTAGAGCTAGCAGTAATGCCCCGTTCTGAAGTGT
GTGCTGACTACCGGTCGAGAACCTCGTGCAGTAGCAGCAATGGCAAGCGT
ATGTCCACGCTTCTACGGCAGCACTACCTAGAAATCCACAAGATGCGGCT
CGAAAACAACACGTGCACGGCGATGGTGCGTACGTTGAGTAAACCTGGCC
TCGAGCGCGTCACC
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