mRNA_A-nodosum_M_contig923.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig923.10.1
Unique NamemRNA_A-nodosum_M_contig923.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig923.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig923contigA-nodosum_M_contig923:247853..248455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size603
Hectar predicted targeting categorymitochondrion
Exons1
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870394.0078294-CDS-A-nodosum_M_contig923:247852..2483171680870394.0078294-CDS-A-nodosum_M_contig923:247852..248317Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig923 247853..248317 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870394.0285287-UTR-A-nodosum_M_contig923:248317..2484551680870394.0285287-UTR-A-nodosum_M_contig923:248317..248455Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig923 248318..248455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig923.10.1prot_A-nodosum_M_contig923.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig923 247853..248317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig923.10.1

>prot_A-nodosum_M_contig923.10.1 ID=prot_A-nodosum_M_contig923.10.1|Name=mRNA_A-nodosum_M_contig923.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=155bp
LWLPPPSHSLRLWAPQRFQPLPRFHSSCPSQASGTPCRHTCGTAPHATAG
SPRAPRRSELHTLVGRGTSPTPTATTAHNAECSLPRATGLKVHVPQQGLS
VRTSGLHQRPGNGGPRNSMGVHREFLPPKQRAGPRDARSHPPKRTSRERD
PPPP*
back to top

mRNA from alignment at A-nodosum_M_contig923:247853..248455+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig923.10.1 ID=mRNA_A-nodosum_M_contig923.10.1|Name=mRNA_A-nodosum_M_contig923.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=603bp|location=Sequence derived from alignment at A-nodosum_M_contig923:247853..248455+ (Ascophyllum nodosum dioecious)
CTTTGGTTGCCCCCCCCGTCCCACAGCCTACGGCTATGGGCGCCTCAACG
GTTTCAACCATTGCCGCGGTTCCACAGCTCCTGCCCCAGCCAGGCTTCTG
GCACCCCCTGCCGACACACTTGCGGCACGGCACCCCATGCAACCGCCGGC
TCCCCGAGAGCCCCACGACGCTCCGAGCTCCACACCCTGGTCGGTCGTGG
CACGTCGCCAACCCCAACCGCAACCACAGCCCACAACGCGGAATGCTCGT
TACCTAGAGCTACCGGTCTCAAAGTTCATGTTCCGCAACAAGGCCTCTCC
GTCCGAACTTCGGGTCTCCATCAAAGACCAGGCAACGGAGGTCCACGAAA
CTCTATGGGCGTTCACCGGGAATTTCTACCGCCTAAACAGCGCGCTGGAC
CTCGCGACGCAAGATCGCACCCCCCTAAGCGAACGAGTCGTGAACGCGAC
CCTCCGCCTCCGTGACCTCGTGGAAGCGGCTTGTGGCACCACCGACGGTG
AACAATGACTCCGCGAAACCCTCCGCAGGATCGAGATGGAGCGCGCCAAT
CGGACGGAGTCTCCGGCCAGCGACTCCTCCACTACCACCGGTCAACGCCG
CCG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig923:247853..248455+

>mRNA_A-nodosum_M_contig923.10.1 ID=mRNA_A-nodosum_M_contig923.10.1|Name=mRNA_A-nodosum_M_contig923.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=465bp|location=Sequence derived from alignment at A-nodosum_M_contig923:247853..248455+ (Ascophyllum nodosum dioecious)
CTTTGGTTGCCCCCCCCGTCCCACAGCCTACGGCTATGGGCGCCTCAACG
GTTTCAACCATTGCCGCGGTTCCACAGCTCCTGCCCCAGCCAGGCTTCTG
GCACCCCCTGCCGACACACTTGCGGCACGGCACCCCATGCAACCGCCGGC
TCCCCGAGAGCCCCACGACGCTCCGAGCTCCACACCCTGGTCGGTCGTGG
CACGTCGCCAACCCCAACCGCAACCACAGCCCACAACGCGGAATGCTCGT
TACCTAGAGCTACCGGTCTCAAAGTTCATGTTCCGCAACAAGGCCTCTCC
GTCCGAACTTCGGGTCTCCATCAAAGACCAGGCAACGGAGGTCCACGAAA
CTCTATGGGCGTTCACCGGGAATTTCTACCGCCTAAACAGCGCGCTGGAC
CTCGCGACGCAAGATCGCACCCCCCTAAGCGAACGAGTCGTGAACGCGAC
CCTCCGCCTCCGTGA
back to top