mRNA_A-nodosum_M_contig922.4.3 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig922.4.3
Unique NamemRNA_A-nodosum_M_contig922.4.3
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig922.4.3 vs. uniprot
Match: D7FRZ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRZ6_ECTSI)

HSP 1 Score: 628 bits (1619), Expect = 1.110e-211
Identity = 345/478 (72.18%), Postives = 393/478 (82.22%), Query Frame = 1
Query:    1 MKTAWYIIFLLIFILALFVVPFTIFFYEEDDSLALTGRNDCKKAFVAASKYMIGVVVIVALVFGILFVVLGKSDVPVTNYEFEMVVLLSTGDELGNRRTIESSKGLTEDLSDDRSVQSGSIAVSDESVQLQVSFPVFVMALMSFVGWVLFVFFGGLGLVGIPIDSIRAFFNRPQKLDRGQVAMVEIGIKRRCDELVSVGEQMKGVRQDTREAIHGGELRFLERRRRTKMEKTEFNQFKQAVYLLEREYDNLAICKDYNRKFNPFAPVLWLAVGFVTGIIAVIWILHMXXXXXXXXXXXXXXXXXXFWFDTWFPLFGVLSVAIFSLYLLVACVKGCFKYGLRLVWFTLHPMKPHGTYMNSFLFNCGIILMCTPPVIQFTVQALSAYLSNTEVTNFFNVQVRYMRFVRYFFDNNVFVIALLALTILSTIYLLSRPADHPVSAKDIQEMLRKSAQQQAPQPPDPPTGAVVEEGDGMAFNAQ 1434
            M  AWYI+F+LIFI ALF++P+TIFFYEEDDSLALTGRNDCKKA  +A+KYM+GVVVIVALV GILFVVLG+SDVPV ++EF+M VLLSTGD LGNR  I    G+TEDL+ DRSV S +I  S++SV LQ+SFPVFVMALMSFVGW+LFVFFGGLGLVGIPIDSIR+F  RPQ+LDRGQVA++E GIKRRCD+LVSVGEQ+KGVRQDTREAI GG+LRFLERRRR   E  EFNQFKQAV LLE +Y  L  CKDY +KFNP  P  WL  G +  IIA++WI+H XXXXXXXXXXXXX      WFD WFPLFGVLSVA+FS YLL ACVKGCFK+GLRLVWFTLHPMKP+GTYMNSFLFNCGII MC  PVIQFTVQA SAYL NT+VTNFFNVQVRY+RF RYFF+NNVF+IALL LT+ S IYL  RP D PVSA++IQE LRKSA+ Q+    +   GA V + +G    +Q
Sbjct:    1 MAPAWYIVFMLIFIFALFIIPYTIFFYEEDDSLALTGRNDCKKALCSATKYMVGVVVIVALVSGILFVVLGQSDVPVRDFEFDMPVLLSTGD-LGNRIDILQGNGVTEDLTVDRSVVSEAIIDSEDSVVLQLSFPVFVMALMSFVGWILFVFFGGLGLVGIPIDSIRSFTTRPQRLDRGQVAVLEGGIKRRCDDLVSVGEQLKGVRQDTREAIEGGQLRFLERRRRNNNEAKEFNQFKQAVSLLEEDYPTLEFCKDYFQKFNPVKPFAWLLFGILASIIALVWIIHXXXXXXXXXXXXXXLNDYFLWFDKWFPLFGVLSVAVFSFYLLAACVKGCFKFGLRLVWFTLHPMKPNGTYMNSFLFNCGIIFMCGTPVIQFTVQAFSAYLRNTDVTNFFNVQVRYVRFFRYFFENNVFIIALLILTVFSGIYLSCRPVDSPVSAQNIQETLRKSAEYQSAHSTNGGGGAAVSDENGNPVGSQ 477          
BLAST of mRNA_A-nodosum_M_contig922.4.3 vs. uniprot
Match: H6WB98_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB98_VAULI)

HSP 1 Score: 402 bits (1032), Expect = 4.180e-124
Identity = 214/454 (47.14%), Postives = 301/454 (66.30%), Query Frame = 1
Query:    1 MKTAWYIIFLLIFILALFVVPFTIFFYEEDDSLALTGRNDCKKAFVAASKYMIGVVVIVALVFGILFVVLGKSDVPVTNYEFEMVVLLSTGDELGNRRTIESSKGLTEDLSDDRSVQSGSIAVSDESVQLQVSFPVFVMALMSFVGWVLFVFFGGLGLVGIPIDSIRAFFNRPQKLDRGQVAMVEIGIKRRCDELVSVGEQMKGVRQDTREAIHGGELRFLERRRRTKMEKTEFNQFKQAVYLLEREYDNLAICKDYNRKFNPFAPVLWLAVGFVTGIIAVIWILHMXXXXXXXXXXXXXXXXXXFWFDTWFPLFGVLSVAIFSLYLLVACVKGCFKYGLRLVWFTLHPMKPHGTYMNSFLFNCGIILMCTPPVIQFTVQALSAYLSNTEVTNFFNVQVRYMRFVRYFFDNNVFVIALLALTILSTIYLLSRPADHPVSAKDIQEMLRKSAQQQ 1362
            M  AW ++F LI I   F++PFTIFFYEEDD+L L G+ + KK  + +SKYM+ +V++V+L+  + ++ LGKS++PV  Y   +  LLS   EL    TI    G +  L  D+  +S +   S ++++L VSF +F++A+++F+GW LF  F GLG+ GI ID IR F NRP++LDRGQ++ +E+ ++RRC ELV +G  +K  R  + +        +L ++ +++ +  EFN+FKQ VY+LE ++D   +CK Y+ K+NP  P+ WL VG V+ II ++WILHM                   WFD WFPLFG +SVAIFS YLL A +KGCFK+GLR+VWFTLHPMK + TYMNSFLFN GIIL+C P  IQF VQA S+Y  + E+ N  NVQVRY+RF ++F+ NNVFV ALL LT+LS+IYL  RP+D    AK ++E L +   +Q
Sbjct:   77 MHLAWTVLFYLILIFTFFLIPFTIFFYEEDDTLELEGQYNFKKTLIISSKYMLALVIMVSLILALTYLFLGKSELPVDEYRLSVGQLLSP--EL--TFTINDPSGRSRPLVGDQITKSLATK-SQDTIRLNVSFGLFLLAILAFIGWFLFAAFAGLGIPGISIDLIREFLNRPKRLDRGQISALEMAVQRRCKELVEIGTMLKQKRAQSSQIRSN----YLSKQIKSRADNKEFNRFKQMVYVLEEDFDQFVLCKAYSTKYNPLKPIFWLCVGIVSAIIGLLWILHMILYMLIDPPATNFLNEYFNWFDQWFPLFGTVSVAIFSAYLLAAAIKGCFKFGLRIVWFTLHPMKINETYMNSFLFNVGIILLCVPAAIQFCVQAFSSYAVSAEINNILNVQVRYLRFFQFFYANNVFVYALLILTVLSSIYLAVRPSDSSNKAKIVRETLIRLGSEQ 521          
BLAST of mRNA_A-nodosum_M_contig922.4.3 vs. uniprot
Match: A0A835Z009_9STRA (LMBR1-like membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z009_9STRA)

HSP 1 Score: 396 bits (1017), Expect = 6.910e-122
Identity = 214/449 (47.66%), Postives = 293/449 (65.26%), Query Frame = 1
Query:    1 MKTAWYIIFLLIFILALFVVPFTIFFYEEDDSLALTGRNDCKKAFVAASKYMIGVVVIVALVFGILFVVLGKSDVPVTNYEFEMVVLLSTGDELGNRRTIESSKGLTEDLSDDRSVQSGSIAVSDESVQLQVSFPVFVMALMSFVGWVLFVFFGGLGLVGIPIDSIRAFFNRPQKLDRGQVAMVEIGIKRRCDELVSVGEQMKGVRQDTREAIHGGELRFLERRRRTKMEKTEFNQFKQAVYLLEREYDNLAICKDYNRKFNPFAPVLWLAVGFVTGIIAVIWILHMXXXXXXXXXXXXXXXXXXFWFDTWFPLFGVLSVAIFSLYLLVACVKGCFKYGLRLVWFTLHPMKPHGTYMNSFLFNCGIILMCTPPVIQFTVQALSAYLSNTEVTNFFNVQVRYMRFVRYFFDNNVFVIALLALTILSTIYLLSRPADHPVSAKDIQEMLRK 1347
            M  AW  +F LIFI A F++P+TIFFYEEDD+  L G+ +  K F+ A+KYM+ V  +VALV GI F  LG SD+PV  Y    +        +    T      L+  L+  +   +  +A + + V L V+F +++MA+MSFVGW LF  F GLG+ GI ID +R + +RPQ+LDR Q+A +E+    R  ELV +G  +K  R D R+   G    ++ +R+  + E TEF +FKQ VY+LE +Y  + +CK+Y+ K+NP  P+ W+ VG V+G I V+W++HM                   WFD WFPLFG +S+ +F++YLLVA VKGCFK+GLRL+WFTLHPMK + TYMNSFLFN GIILMC P VIQF+VQA SAYL + ++ +FFNVQV+Y+RF RYF+ N+VFV ALL +T+LST +L  RP+D P S K ++E LRK
Sbjct:   77 MTAAWSALFYLIFIFAFFLIPYTIFFYEEDDTEVLEGKFNFAKTFIIATKYMLVVAFLVALVVGISFYFLGISDIPVQQYAASTIHAYLY---VQQYTTSSFMYCLSTPLTTAQLALAPDVASTGQEVTLNVTFGLYLMAIMSFVGWFLFAVFAGLGMPGISIDLVRGYQHRPQRLDRAQIAALEL----RTKELVEIGTMLKSTRSD-RKLTRGN---YIAKRQAMRAESTEFKRFKQMVYILEEDYQQMVLCKEYSTKYNPLKPLFWMLVGIVSGCICVLWLIHMVVYMLATPPYALFLNAYFNWFDKWFPLFGAISIGLFAMYLLVAAVKGCFKFGLRLMWFTLHPMKLNETYMNSFLFNVGIILMCVPAVIQFSVQAFSAYLVSADINSFFNVQVKYLRFFRYFYVNDVFVFALLIITLLSTAFLGVRPSDTPASTKQVREALRK 514          
BLAST of mRNA_A-nodosum_M_contig922.4.3 vs. uniprot
Match: A0A7S1XYX2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYX2_9STRA)

HSP 1 Score: 296 bits (757), Expect = 5.120e-84
Identity = 172/455 (37.80%), Postives = 266/455 (58.46%), Query Frame = 1
Query:    1 MKTAWYIIFLLIFILALFVVPFTIFFYEEDDSLALTGRNDCKKAFVAASKYMIGVVVIVALVFGILFVVLGKSDVPVTNYE---FEMVVLLSTGDELGNRRTIESSKGLTEDLSDDRSVQSGSIAVSDESVQLQVSFPVFVMALMSFVGWVLFVFFGGLGLVGIPIDSIRAFFNRPQKLDRGQVAMVEIGIKRRCDELVSVGEQMKGVRQDTREAIHGGELRFLERRRRTKMEKTEFNQFKQAVYLLEREYDNLAICKDYNRKFNPFAPVLWLAVGFVTGIIAVIWILHMXXXXXXXXXXXXXXXXXXFWFDTWFPLFGVLSVAIFSLYLLVACVKGCFKYGLRLVWFTLHPMKPHGTYMNSFLFNCGIILMCTPPVIQFTVQALSAYLSNTEVTNFFNVQVRYMRFVRYFFDNNVFVIALLALTILSTIYLLSRPADHPVSAKDIQEMLRKSAQ 1356
            M  AW I++  I ++++ V P+ IF+YE DD     G +  K    +A+ Y    +V+  +    +F  L  +++PV  Y    F+   +  T   +G+  T       T   SDD +  S S   S +++ L VSFPV++MALM+FVG+  FV FGG+GL  +PID I  +  RP+++D+ +    E GIK+R  +L+ +G+ +K  R +   A H       ERR+R + +    N+FKQ V++LE++Y+ L +    ++ FNP  P   L  G ++ I++++W+L +                   W+D WFPLFG++SV IF+ YL+   VKGCFK+G+R     LHPMK +GTYMNSFLFN G++L+C+ PV+ F  +A + Y ++T+V N FNVQVRY+ F   FF N VFV  LL L +LS +YLL +P D P SA  ++E+L+++A+
Sbjct:  157 MTLAWSIMYCTIAVMSVIVYPYAIFYYEADD-----GMDPSKSPACSAASYTFLSLVVALVTTVCMFQFLATTEIPVETYSADIFDFQDVAVTASCIGDVVTC------TMTASDDLTAAS-SYETSSDTLNLNVSFPVYLMALMAFVGYWFFVLFGGIGLAALPIDLILGYVYRPKRIDQKRFREEEKGIKKRSQDLIEIGQLLKKERTEFARAGHS----MWERRKRRQKDTITVNKFKQMVFILEQDYEQLKMSYANHKNFNPLVPYAMLLFGVISAILSLLWMLQIILFLLVDPPTTSFLNEYFAWYDKWFPLFGIISVCIFTFYLMACVVKGCFKFGVRCFCIELHPMKRNGTYMNSFLFNVGLLLICSLPVVHFATEAFADYAADTDVHNIFNVQVRYLIFFNEFFGNQVFVYMLLILALLSALYLLYKPKDAPASASKMKEILKRNAE 595          
BLAST of mRNA_A-nodosum_M_contig922.4.3 vs. uniprot
Match: A0A7R9Y953_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y953_9STRA)

HSP 1 Score: 289 bits (739), Expect = 2.490e-82
Identity = 164/457 (35.89%), Postives = 265/457 (57.99%), Query Frame = 1
Query:    1 MKTAWYIIFLLIFILALFVVPFTIFFYEEDDSLALTGRNDCKKAFVAASKYMIGVVVIVALVFGILFVVLGKSDVPVTNYEFEMVVLLSTGDELGNRRTIESSKGLTEDL------SDDRSVQSGSIAVSDESVQLQVSFPVFVMALMSFVGWVLFVFFGGLGLVGIPIDSIRAFFNRPQKLDRGQVAMVEIGIKRRCDELVSVGEQMKGVRQDTREAIHGGELRFLERRRRTKMEKTEFNQFKQAVYLLEREYDNLAICKDYNRKFNPFAPVLWLAVGFVTGIIAVIWILHMXXXXXXXXXXXXXXXXXXFWFDTWFPLFGVLSVAIFSLYLLVACVKGCFKYGLRLVWFTLHPMKPHGTYMNSFLFNCGIILMCTPPVIQFTVQALSAYLSNTEVTNFFNVQVRYMRFVRYFFDNNVFVIALLALTILSTIYLLSRPADHPVSAKDIQEMLRKSA 1353
            M+ AW+I++ ++  L + V PF IF+YE DD L  T    C     +A  Y    + I  ++   +F  +G + +PV  +   +             + +  + G   D+      + D    + S + SDE+V+L VSFPV+++ALM+FVG+  FV FGG+G+  +PID I ++  RP+++D+ +    E GI++R  +L+ + + +K  R +  ++ H       E+R+R + +    N+FKQ VY+LE++Y+ L +    ++KFNP  P + L  G ++ + +++WIL +                   W+D +FPLFG+LSVA+F+LYL+ A VKGCFK G+R     LHPMK + TYMNSFLFN G++L+C+ PV+ F+ +A SAY +NT+  N FN Q+RYM F  YFF   VF+   L L+ LS +YLL +P D P SA +++ +L +++
Sbjct:   85 MRLAWFILYCIMAFLVIIVFPFAIFYYEADDGLEKTRSPLC-----SAVTYTFFTLAIALVILLCMFFFIGITQIPVREHSVNLSAF----------QDVPITSGCLSDIVRCTMTNTDDVTGNASFSESDETVELPVSFPVYLIALMAFVGYFFFVIFGGVGMAALPIDLILSYVYRPKRIDQRRFREEEKGIQKRSKDLIEIAQLLKKERSEFAKSGHS----MWEKRKRRQQDTITINKFKQMVYILEQDYETLKLSFANHKKFNPLIPYMQLVAGVLSCVFSLLWILQIILFILVEPPATAFLNEYFEWYDQFFPLFGILSVALFALYLMCAVVKGCFKIGVRCFCIELHPMKYNATYMNSFLFNIGLLLLCSIPVVHFSTEAFSAYAANTDAANIFNGQIRYMVFFTYFFAEKVFIYIFLILSCLSLVYLLYKPRDTPASAVEMKAVLARNS 522          
BLAST of mRNA_A-nodosum_M_contig922.4.3 vs. uniprot
Match: A0A6U6IXR7_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6IXR7_9STRA)

HSP 1 Score: 278 bits (711), Expect = 3.230e-78
Identity = 167/463 (36.07%), Postives = 257/463 (55.51%), Query Frame = 1
Query:    1 MKTAWYIIFLLIFILALFVVPFTIFFYEEDDSLALTGRNDCKKA---FVAASKYMIGVVVIVALVFGILFVVLGKSDVPVTNY---EFEMVVLLSTGDELGNRRTIESSKGLTEDLS-DDRSVQSGSIAVSDESVQLQVSFPVFVMALMSFVGWVLFVFFGGLGLVGIPIDSIRAFFNRPQKLDRGQVAMVEIGIKRRCDELVSVGEQMKGVRQDTREAIHGG----ELRFLERRRRTKMEKTEFNQFKQAVYLLEREYDNLAICKDYNRKFNPFAPVLWLAVGFVTGIIAVIWILHMXXXXXXXXXXXXXXXXXX----FWFDTWFPLFGVLSVAIFSLYLLVACVKGCFKYGLRLVWFTLHPMKPHGTYMNSFLFNCGIILMCTPPVIQFTVQALSAYLSNTEVTNFFNVQVRYMRFVRYFFDNNVFVIALLALTILSTIYLLSRPADHPVSAKDIQEMLR 1344
            M   W I + L+ I    ++PF+ F+YE DD + + G +   K       A KY I V++IV L F + ++ L ++ +PV  Y   +F     +   ++    + +  S     D+  DD+ V  G+    + +  L  S   F   LM+++GW  F  FGG+GL  +P+D I  F NRP+ +D  + A  E+ I+ R +ELV +GE +K + QD +E   G     +++  + R+  K EK    QFKQAVYLLE++ ++   C    + +NP  P   L  G ++ ++++ WILH+                       WFD WFPLFGVLSVAIF++YL+   VKGCFK+GLR ++FTLHPMK +GTYM+SFLFN G++L+C  P++QF V A  +Y     V   F  Q+ Y++F  YF+ NNVFV  LLA ++L+ +YL  RP D    + ++++ L+
Sbjct:   84 MTLFWDIFYWLVPIWVWIMIPFSTFYYEADDGMLMAGTSVGAKPNSRLCEAIKYQIMVLIIVGLFFALTYLFLNETAIPVMEYNGTDFAAAYQIQPYNQSNVSQFVSFSSSQLADMGPDDKKVILGTSDPFEGTEVLATSISTFFAGLMAWLGWFFFALFGGVGLASMPLDLILRFVNRPRHMDAVEFAEAEMSIRERVNELVDIGELIK-IDQDEKENSGGKGGWFKIKSRDERQEAKEEKKTLLQFKQAVYLLEQDVEDFKNCSSNYQSYNPLIPYAALIFGVISFVVSIFWILHIILYIIPLGLGKNPVTPFLNSYFMWFDGWFPLFGVLSVAIFTVYLMFCAVKGCFKFGLRFLFFTLHPMKVNGTYMSSFLFNTGLVLLCALPIVQFCVTAFDSYAIYATVNQVFGTQIHYLKFFNYFWTNNVFVYMLLAFSVLTALYLGCRPRDTSADSLELRDRLK 545          
BLAST of mRNA_A-nodosum_M_contig922.4.3 vs. uniprot
Match: A0A6G0X0P3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0P3_9STRA)

HSP 1 Score: 268 bits (686), Expect = 6.090e-75
Identity = 167/454 (36.78%), Postives = 269/454 (59.25%), Query Frame = 1
Query:    1 MKTAWYIIFLLIFILALFVVPFTIFFYEEDDSLALTGRNDCKKAFVAASKYMIGVVVIVALVFGILFVVLGKSDVPVT-----NYEFEMVVLLSTGDELGNRRTIESSKGLTEDLSDDRSVQSGSIAVSDESVQLQVSFPVFVMALMSFVGWVLFVFFGGLGLVGIPIDSIRAFFNRPQKLDRGQVAMVEIGIKRRCDELVSVGEQMKGVRQDTREAIHGGELRFLERRRRTKMEKTEFNQFKQAVYLLEREYDNLAICKDYNRKFNPFAPVLWLAVGFVTGIIAVIWILHMXXXXXXXXXXXXXXXXXXFWFDTWFPLFGVLSVAIFSLYLLVACVKGCFKYGLRLVWFTLHPMKPHGTYMNSFLFNCGIILMCTPPVIQFTVQALSAYLSNTEVTNFFNVQVRYMRFVRYFFDNNVFVIALLALTILSTIYLLSRPADHPVSAKDIQEMLRK 1347
            M+T W I+F+ I +  + ++P++I+FYE DD   ++G+   +  ++ A K  I  +V+V +V  I +V    SD+P T            + ++  + +G    I+ +   +E+ S   ++ +G   ++  S+++ VS PV++ AL+SFVGW  F  F G+GLV +P+D I A+F RP+ +     A  ++ I+ R  EL+ VG+++K        A    ++   ERR+  K++    N+FKQAVYLLE++   L +C +  + FNP  PV  L +G   GII+++WIL +      XXXXX        WFD WFPLFG +SV IF++YLL+AC+KGCFK+G+R     LHPM+ +GTYMNSFLFN  +IL+C  PV+QF+ QA + Y+  T +     +Q++YM+   +F+ +NVF+ A+L + +L+T+YL  RP D       I++ + K
Sbjct:   84 METLWLIVFMAIAVFLVVLLPYSIYFYESDDDFEVSGKRAHR--WLDALKLEIATLVVVGIVIAITYVTSSTSDIPYTVLVVNTTSANDTIQIAGANAMGLHSYIDGALISSEERS--AALVNGLNPITT-SMRISVSVPVYITALVSFVGWFAFSIFVGVGLVAMPLDLILAYFFRPKFIPADIYAQQKMLIQIRSLELIEVGKEIK----TNMLAPPDAKMSARERRKHGKLDTITMNKFKQAVYLLEKDVAELKLCHEDYKNFNPLVPVGKLILGVFAGIISILWILQIIVGMLPXXXXXPFLNDYFMWFDKWFPLFGTVSVGIFTMYLLMACIKGCFKFGMRCFCCALHPMEYNGTYMNSFLFNLALILLCCIPVVQFSNQAFNDYVRLTTIQTLMGIQLKYMKGFSFFWVHNVFLYAILIIVLLTTLYLAVRPRDTSSKTDAIRKKIEK 528          
BLAST of mRNA_A-nodosum_M_contig922.4.3 vs. uniprot
Match: A0A024UQP0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQP0_9STRA)

HSP 1 Score: 267 bits (683), Expect = 1.530e-74
Identity = 167/458 (36.46%), Postives = 261/458 (56.99%), Query Frame = 1
Query:    1 MKTAWYIIFLLIFILALFVVPFTIFFYEEDDSLALTGRNDCKKA---FVAASKYMIGVVVIVALVFGILFVVLGKSDVPVTNYEFEMVVLLST---GDELGNRRTIESSKGLTEDL-SDDRSVQSGSIAVS--DESVQLQVSFPVFVMALMSFVGWVLFVFFGGLGLVGIPIDSIRAFFNRPQKLDRGQVAMVEIGIKRRCDELVSVGEQMKGVRQDTREAIHGGELRFLERRRRTKMEKTEFNQFKQAVYLLEREYDNLAICKDYNRKFNPFAPVLWLAVGFVTGIIAVIWILHMXXXXXXXXXXXXXXXXXXFWFDTWFPLFGVLSVAIFSLYLLVACVKGCFKYGLRLVWFTLHPMKPHGTYMNSFLFNCGIILMCTPPVIQFTVQALSAYLSNTEVTNFFNVQVRYMRFVRYFFDNNVFVIALLALTILSTIYLLSRPADHPVSAKDIQEMLRK 1347
            M+T W I+F+ I +  + ++P++I++YE DD     G +D  K    ++ A K  I  V++V +V  I ++    SD+P     +   V   T    D +G          L  D+ S +  V + S  ++  + S++L VS P+++ AL+SFVGW  F  F G+GLV +P+D I AFF RP+ +     A  ++ I+ R  EL+ VG+++K       +A    +L   ERR+  K++    N+FKQAVYLLE++   L +C +  + +NP  P+  L +GF+  I++ +W+L +                   WFD WFPLFG +SV IFS+YLL+AC+KGCFK+G+R     LHPM+ +GTYMNSFLFN  +IL+C  PV+QF+ QA S Y+  T +     +Q+RYM+    F+ +NVF+ A+LA+ +L+T+YL  RP D       I++ + K
Sbjct:   84 METLWLIVFMSIAVFLVVLLPYSIYYYESDD-----GFDDSTKRTHRWLDALKLEIATVIVVGIVIAITYITSSTSDIPYNVIVYNSTVTNDTIQFTDAVGGLHDF-----LDGDIISPNERVYAMSHGLNPLETSMRLAVSVPIYITALVSFVGWFAFSIFVGVGLVALPLDLILAFFFRPKFIPADVYAQQKMLIQIRSLELMEVGKEIKNSMLTHPDA----KLSARERRKNNKLDAITMNKFKQAVYLLEKDVAELKLCHEDYKNYNPLVPLGKLVLGFIASIVSFLWLLQIILGMVPPLPILPFLNDYFIWFDQWFPLFGTMSVGIFSMYLLMACIKGCFKFGMRCFCCALHPMEYNGTYMNSFLFNLALILLCCIPVVQFSNQAFSDYVRLTTIQTMMGIQLRYMKGFSVFWVHNVFLYAILAIVLLTTLYLAVRPRDTSSKTDAIRKKIEK 527          
BLAST of mRNA_A-nodosum_M_contig922.4.3 vs. uniprot
Match: A0A2D4BQT9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQT9_PYTIN)

HSP 1 Score: 266 bits (680), Expect = 4.350e-74
Identity = 160/462 (34.63%), Postives = 253/462 (54.76%), Query Frame = 1
Query:    1 MKTAWYIIFLLIFILALFVVPFTIFFYEEDDS----LALTGRNDCKKAFVAASKYMIGVVVIVALVFGILFVVLGKSDVPVTNYEFEMVVLLSTGDELGNRRTIESSKGLTEDLSDDRSVQSGSIAVSDESVQLQVSFPVFVMALMSFVGWVLFVFFGGLGLVGIPIDSIRAFFNRPQKLDRGQVAMVEIGIKRRCDELVSVGEQMKGVRQDTREAIHGGELRFLERRRRTKMEKTEFNQFKQAVYLLEREYDNLAICKDYNRKFNPFAPVLWLAVGFVTGIIAVIWILHMXXXXXXXXXXXXXXXXXXFWFDTWFPLFGVLSVAIFSLYLLVACVKGCFKYGLRLVWFTLHPMKPHGTYMNSFLFNCGIILMCTPPVIQFTVQALSAYLSNTEVTNFFNVQVRYMRFVRYFFDNNVFVIALLALTILSTIYL-----LSRPADHPVSAKDIQEMLRKSAQQ 1359
            M   W I+F+ + +  L +VPF+IF+YE DD     LA +GR +    ++ A K  IG +++   +  +LFV + KS +P+     + V ++ST    G    ++   G T  LS      +  +      V L+VS P++   L+SFVGW  F  F G+GLV +P+D + AFF RP+ +     A  ++ ++RR  EL+ +G  +K     + E          ERR++ K++    N+FKQ+VYLLE++ + L +C +  R +NP   V  L  G + G+++ IW+LH+                   WFD WFPLFG +SV +FS YLL+  VKGCFK+G+R   F LHPMK HGTYMNS LFN G++L C  P +QF  +A   Y   T +     VQ+RY++ + Y ++ N+FV  +L   +L+TIYL     +++P D+     D+++ + +  ++
Sbjct:   85 MDLLWLIVFMCVIVFILVLVPFSIFYYEADDGGEEELAGSGRAN-NHQWLEAIKLEIGTLLVAVSLIVVLFVTVSKSHIPM-----KAVTVVSTSPTFGFHDYVD---GAT--LSMAELANADKLVAERIRVTLEVSLPIYTTGLVSFVGWFAFTIFCGIGLVALPLDLVLAFFYRPKFISADVYAHQKLALQRRSQELLELGRNIKA----SMERPGAKAASSWERRKQXKLDFVTLNKFKQSVYLLEQDMEELKLCHEEYRNYNPLIAVFKLVAGGIAGLLSTIWVLHIALYMLPPVPLVPFLNTYFMWFDQWFPLFGTISVGVFSWYLLMCAVKGCFKFGMRCFCFALHPMKLHGTYMNSMLFNLGLVLACCIPAVQFCDEAFRDYGRLTAIRTMMGVQIRYLQGMSYLWEYNIFVYGILLFALLTTIYLARCYCIAKPRDNASPVDDLRKKIERQVRE 531          
BLAST of mRNA_A-nodosum_M_contig922.4.3 vs. uniprot
Match: W7U3J0_9STRA (Lmbr1-like conserved region-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3J0_9STRA)

HSP 1 Score: 264 bits (675), Expect = 1.390e-73
Identity = 169/454 (37.22%), Postives = 254/454 (55.95%), Query Frame = 1
Query:    1 MKTAWYIIFLLIFILALFVVPFTIFFYEEDDSLALTGRNDCKKAFVAASKYMIGVVVIVALVFGILFVVLGKSDVPVTNYEFEMVVLLSTGDELGNRR--TIESSKGLTEDLSDDRSVQSGSIAVSDE---SVQLQVSFPVFVMALMSFVGWVLFVFFGGLGLVGIPIDSIRAFFNRPQKLDRGQVAMVEIGIKRRCDELVSVGEQMKGVRQDTREAIHGGELRFLERRRRTKMEKTEFNQFKQAVYLLEREYDNLAICKDYNRKFNPFAPVLWLAVGFVTGIIAVIWILHMXXXXXXXXXXXXXXXXXXFWFDTWFPLFGVLSVAIFSLYLLVACVKGCFKYGLRLVWFTLHPMKPHGTYMNSFLFNCGIILMCTPPVIQFTVQALSAYLSNTEVTNFFNVQVRYMRFVRYFFDNNVFVIALLALTILSTIYLLSRPADHPVSAKDIQEMLRK 1347
            M   W I+++LI +L + ++PF IF+YE+DD L   G+    +AF  A KY    +   ALV G+ +  +G+  +PV      +V L  T   LG  R  T++SS+           +      + D     +  Q +F V+++AL+SFVGW LF  FGG+GL  +P+D I AF  RP+ +   ++A  ++ ++ R  +L+ VG  ++  R+D R    GG   FL R    + E+    +FKQ VY+LE +Y+     KD   K+NP  P+  L +G +  I+ V+W+LH+                    FD WFPLFGV+SVAIF LYLL   V G FK G+R +   LHPMK +GTYMNSFLFN  +IL+CT PV++F+  A + Y   + + +FF VQ+RY+ F   F+ NN+FV  LL    L+T+Y +  P D PV A+++++ LR+
Sbjct:   85 MSLFWQIMYVLITVLCVAILPFAIFYYEDDDGLT-EGKG---QAFCGAVKYTAVCLFASALVVGLCYFFIGRVRLPVLEVPASVVDL--TVHSLGTPRNATLDSSE-----------IALAGALMKDSFRTKISFQSTFIVYMIALVSFVGWFLFAIFGGVGLAALPMDLITAFTTRPKPMPAEELAHEQLLLQARVADLIEVGHLVQSERKDRRSK--GGN--FLARTVAERSERNTLLKFKQMVYMLESDYEKFRAAKDMG-KYNPLWPIGMLLLGMLASILTVMWVLHVIVYMFFFPPLSQFLNQYFIQFDEWFPLFGVVSVAIFVLYLLFCVVAGNFKLGVRFLCVELHPMKINGTYMNSFLFNLILILLCTFPVVEFSTSAFAGYARFSNIYHFFGVQIRYLIFFSIFYTNNIFVYMLLGFCFLATLYFIKTPRDKPVEAEEVKQSLRR 516          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig922.4.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRZ6_ECTSI1.110e-21172.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
H6WB98_VAULI4.180e-12447.14Uncharacterized protein n=1 Tax=Vaucheria litorea ... [more]
A0A835Z009_9STRA6.910e-12247.66LMBR1-like membrane protein n=1 Tax=Tribonema minu... [more]
A0A7S1XYX2_9STRA5.120e-8437.80Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7R9Y953_9STRA2.490e-8235.89Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U6IXR7_9STRA3.230e-7836.07Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A6G0X0P3_9STRA6.090e-7536.78Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UQP0_9STRA1.530e-7436.46Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A2D4BQT9_PYTIN4.350e-7434.63Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
W7U3J0_9STRA1.390e-7337.22Lmbr1-like conserved region-containing protein n=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig922contigA-nodosum_M_contig922:90893..104138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FRZ6
PFAMsLMBR1
Model size3592
Max annot lvl2759|Eukaryota
KEGG koko:K14617
KEGG Pathwayko04977,map04977
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0044464,GO:0055044,GO:0071944
Exons11
Evalue1.39e-222
EggNOG OGs28H7Y@1|root,2QPKQ@2759|Eukaryota
Ec32 ortholog descriptionLMBR1-like membrane protein
Ec32 orthologEc-12_007050.1
DescriptionLMBR1-like membrane protein
Cds size1437
COG categoryS
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig922.4.3prot_A-nodosum_M_contig922.4.3Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig922 93083..104138 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870390.8879797-UTR-A-nodosum_M_contig922:90892..922691680870390.8879797-UTR-A-nodosum_M_contig922:90892..92269Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig922 90893..92269 -
1680870390.9137416-UTR-A-nodosum_M_contig922:92304..930821680870390.9137416-UTR-A-nodosum_M_contig922:92304..93082Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig922 92305..93082 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870390.933595-CDS-A-nodosum_M_contig922:93082..932321680870390.933595-CDS-A-nodosum_M_contig922:93082..93232Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig922 93083..93232 -
1680870390.9448178-CDS-A-nodosum_M_contig922:97209..973021680870390.9448178-CDS-A-nodosum_M_contig922:97209..97302Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig922 97210..97302 -
1680870390.9581044-CDS-A-nodosum_M_contig922:97585..976851680870390.9581044-CDS-A-nodosum_M_contig922:97585..97685Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig922 97586..97685 -
1680870391.3079119-CDS-A-nodosum_M_contig922:98174..984891680870391.3079119-CDS-A-nodosum_M_contig922:98174..98489Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig922 98175..98489 -
1680870391.324481-CDS-A-nodosum_M_contig922:99073..991351680870391.324481-CDS-A-nodosum_M_contig922:99073..99135Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig922 99074..99135 -
1680870391.4129782-CDS-A-nodosum_M_contig922:99434..996501680870391.4129782-CDS-A-nodosum_M_contig922:99434..99650Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig922 99435..99650 -
1680870391.4272044-CDS-A-nodosum_M_contig922:100436..1005441680870391.4272044-CDS-A-nodosum_M_contig922:100436..100544Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig922 100437..100544 -
1680870391.4374635-CDS-A-nodosum_M_contig922:102008..1021581680870391.4374635-CDS-A-nodosum_M_contig922:102008..102158Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig922 102009..102158 -
1680870391.447507-CDS-A-nodosum_M_contig922:102956..1030921680870391.447507-CDS-A-nodosum_M_contig922:102956..103092Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig922 102957..103092 -
1680870391.4584267-CDS-A-nodosum_M_contig922:104031..1041381680870391.4584267-CDS-A-nodosum_M_contig922:104031..104138Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig922 104032..104138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig922.4.3

>prot_A-nodosum_M_contig922.4.3 ID=prot_A-nodosum_M_contig922.4.3|Name=mRNA_A-nodosum_M_contig922.4.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=479bp
MKTAWYIIFLLIFILALFVVPFTIFFYEEDDSLALTGRNDCKKAFVAASK
YMIGVVVIVALVFGILFVVLGKSDVPVTNYEFEMVVLLSTGDELGNRRTI
ESSKGLTEDLSDDRSVQSGSIAVSDESVQLQVSFPVFVMALMSFVGWVLF
VFFGGLGLVGIPIDSIRAFFNRPQKLDRGQVAMVEIGIKRRCDELVSVGE
QMKGVRQDTREAIHGGELRFLERRRRTKMEKTEFNQFKQAVYLLEREYDN
LAICKDYNRKFNPFAPVLWLAVGFVTGIIAVIWILHMILYMLLQPALTPF
LNDYFFWFDTWFPLFGVLSVAIFSLYLLVACVKGCFKYGLRLVWFTLHPM
KPHGTYMNSFLFNCGIILMCTPPVIQFTVQALSAYLSNTEVTNFFNVQVR
YMRFVRYFFDNNVFVIALLALTILSTIYLLSRPADHPVSAKDIQEMLRKS
AQQQAPQPPDPPTGAVVEEGDGMAFNAQ*
back to top

mRNA from alignment at A-nodosum_M_contig922:90893..104138-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig922.4.3 ID=mRNA_A-nodosum_M_contig922.4.3|Name=mRNA_A-nodosum_M_contig922.4.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=13246bp|location=Sequence derived from alignment at A-nodosum_M_contig922:90893..104138- (Ascophyllum nodosum dioecious)
ATGAAGACCGCGTGGTACATCATCTTCCTACTCATCTTCATCCTAGCGCT CTTTGTTGTACCCTTCACCATCTTCTTCTACGAGGAGGACGACTCCTTAG CGCTGACGTGAGAGAGCTTCTGGCTGCAGGGAACCATGGGATGGGATGCG TTGTAAAGATGCTAATCAATCGACGCAAGAAGCACCCCAGATGTGTTACG GTGTACGACAGTTTGTATTCTTTGTAGAGAGATTCCTAATAATATAGCGG GGTAATTTCGTTGCCTCCCCCCTCCCGTGGAAGTGTTGACCACTTTTACC GTCTTTACTTTCTGCGATAACGTGCTCCAGGATGGTAACGTCCGTTGCGT TGGAACTTGATGGAACTCCATTTCGCTTTTATTCGATTGGCTGAATGACT CAATTAATTTTTATACCGATACTTTGTGTGTCACACATACATGCCCACTA CTACAGACCAACAGTAGGTGTGGGGAAAGAGAGGCGCATATTAATTGGTC CATGGTGACCTGAAAAAGCAGCACCCGGTACTCCCTGTGCCGGCGGACCT TGAGGACTGCTGGCCCTGTGCCGGCGGACTCTCGGCAGCGAGCGCCATCG GTGCGCTTTTGCGTGACCCAATTATCTCGGGACTGACCCGATGGCGGTTG ACGGTATATATTTGTACGCCGTCGTGGAAAGCGAGAGAAAACCCGCGAGT AAACACCATATTGATGATTGATGATTCAGCCTGATTGTGGAGAATGAGCG GGCTCACGCGGGACGGGACGGCTGAACACGTCTCGCGAGACCAAATCCTC GTGCGCGAACGGGGACAGGGAAAACAAAAACATTTTCCCTCTTCAGCTGA CCACGAGCAGGATTGGCAACCATATACCCGGTTGATCCATATTCTGATAA AAGTACTGACCATGCTTGAGCGAATTACGAAGTGCTGAATGTTGTAGTGA AATATGGTTGAATATTCTTGCTCAAACGAATTGTTCGTGCACTCGTACAC CCCACATCCCTCCCCACACACGCCGCATCGGACCACGGAAACCCAGGGGT CGCAACGATTGCAAGAAGGCGTTCGTGGCTGCTTCAAAATACATGATCGG CGTGGTTGTAATCGTAGCTCTCGTGTTTGGCATCCTGTTCGTGGTATTGG GTAAGTCGGACGTCCCCGTCACAAACTACGAGGTGAGACCGATTCTTTGT TTTTGATAGGCTCTATACTGTGAACGGAGGTATCTTTCATCTTTCTCTCA AATATCCACGAGCTTCCACCCACCCAGTTGGCCCAGGATCGTGTTGACGA CATGGCAGGAGATATATTTTTTTCATTTATAAATACGACGTACCTGGTAT ATTTTGTCTAATGTAATAATTAGTATTTGTTAAAAAAAAATCGGGGGGCG GAGTCGTAGATGGTTTGTTATATAGCACAGTTTAGACCATGGGAGTTCGA GACTCGGCGGTGGCAGAAGCATAGCTCTAGACATAGAGGCTGTTATAACG CATTTAATTTAAGTATTAGTAACATAATATTTGTTTTTGGGGTGGGGGAT TGTACATCATAGTATTGACCATAGGAGTCCGAGACTCGGCCATGGCAGAT TGCATATAGCTCTTCACAAGCTGTCATCGCGCATGAAGAGAAGGTGCCGA GTTACCCGCTCAGGCGTTTGGGACTCTGAAAATGTTTTTGTGTTCCATAG CGCACTAAGCCTCCTTTGTCTTATCGTCCGTTCAAAACGAGGCTTCTCTA CGACACCATCCTCCCGGCTCACACCTATGAATTGAGCCTTTTAAGAAAAA ACGTGATGTAGGAACGAGTGTGTTCTGGTGCGAAGTAAACGACTGAAAAC GTATTTCCTTTGAATAACACCCCTACCTCCCCTTCACCCGCCGCGCGCGC ATCTTCTCGCGCATCTTCTCGCGCATCTTCTCGTGTATTTTGTGTGGGGA CGCCTTTCGCTTCGCCATTCGCGCGCGCAGTTCGAAATGGTGGTGCTCTT GTCTACTGGCGATGAGTTGGGGAACCGCAGGACAATCGAAAGTTCCAAGG GCTTGACGGAAGACCTCAGCGACGATCGCTCGGTACAGTCCGGATCCATC GCGGTCAGCGACGAGTCCGTTCAGCTCCAGGTGGGATAGATGTTCAACGT ACGGGGGAAAATTCTGAGGTACTGTACTGTTGGGTATATACCGCTCTCTC CGTGATGTCGGGTACTTTTACCGGGAGTCCGCGCGAACCCGCATCCCCGC ATCCCCCCCCCCCCAAAAAAAACAAAAACAAAACTTTACGGCGGGGAAAA GTCTTCATTTAGACACCACCTCTTGCGGAGCGGATGTTTGCCAAGAGCAC TGATGACATGCTTGTCCCGGTGGCAGAAAATTTAGTTCGAACAGGGCACA CTTTTTTTGCGTCGCTGAGAAGTGGACGAAGGGGAAGAGGGTTGTAACGC CCTTCCGCGAGACCCGCCTTCTAGGATTATAAAATGCTTCCTAAGTCATT TTTGGTTGAGCAAGTCTGAGCTGGATGAGCGAGGCTGTGGTAAGCCTGTT GAGTGTGTTGTGTGTGTTTTCTTCTCATCCATTCTGGACATCAAGTTCGT TGGACGTACCAGCCGGGGTCACACAGGAGGAAGGTCACACAGGATTTTTA ATCCACCTTCCTTCTGCGGTGCGTGCCTTGATTTTTGTCGCGAGAAGGAT TCAGCCATTCCTTTCCCTCGTCGACCGTGAAGTCGAATTTTGTGTACTAA CGAATTAATCGTTCTCCACCCGTTGGGCATTTTTATTTTGGTTTTTTAGT TTTTAGTGAGAAAAATCCCGTTTGCCGGGATCGAACTCACGTCCCAACGT GTCAGAAGGTTACGAGGTGCCTACTGAGCTACCGGGGTCGACCGGTGCGT TAGTAACCAAAAATTGGCGAAATTTTAAGCAGCTATATTTCACGAGTCTT TCGTTGGATCGTAACACGTCCAACCCGCCATAATATGTAGACCTTCTCGC GGAAGGTTGTTTCGTCCCTATCTTCTGAATGAAGTTTCCTCGGCGTGAAG GCGCCCATGGCCCACCACGTGCAATTGGTCGACGAACTGCTTGAGCACGG AAACGGCGTTTTCCTTTCCCGGATCACAGCACACTTTGTTTGTTTGTGCA AGTGTTGATTTTTGCTGTCTGTTGTTTTATGTTCCCTTCACCTGTTGGCC ACCTACTACCGCCAAGATGTTGATCGGTCTCGCGCCCGGCTTTTCCTGAA GACAGGCGGTCCTTAGTCGCGGACATAAACTCTGCACCATAATTTGCTAG AGAGGGAAAGAGAGAAAGAAAGGGCCTCACATACGGAGACGTTTGCACCC GAAGGTCCACGCCGAAATGTATTCCCTTTTCCTCCTGCTGTCCCTGGGGA CAACAACCCTTGCGACAAAGTTGAGGGATATTTTCGCGGAGTTTGGTCTT TTCTCCCTCGTTACCTCTCATTCCCACTAGCTTTAATGCGCTCATGCCGA GACCCCGTGGAAACAACGGTGGCCGGCGGTGACAACTTCGAGATTGCTTC CTGTCGACGAACGTGTCGCTACGCCACGCTACACCACCGCGCAGGTTTCC TTTCCGGTGTTCGTGATGGCGCTGATGTCGTTTGTGGGTTGGGTTCTCTT CGTCTTCTTTGGTGGCCTTGGTCTCGTGGGGATCCCGATCGACAGCATCA GGGTGAGTAACACACACACACACACACGTTTGATCAGAGGTTTTCGTAAC AAGTATCATTGATCCCCCTTTGGGAGGATCAATGCGAGTGGCACAGAATG ACTAGGATGACAGGGCCGGATTGCGCGGTTATGTGCAATTTAATAAAAAA AAAACACACACACACACATACACACACACACACACACAAGTATCATTGAT CCCCCCTTGGGAGGATCAATGCGAGTGGCATAGAATGACTAGGATGACAA GGCCGGATTGCGCGGTTATGTGCAATTTAATAAATACACACACACACACA ATGCAGCATATTTTCCATCGACAGCGTCAGGTTGAGTAAACACACACACT CAATGTAGCATATATTTGAGAATATGGGGTATCGTAGCACCAGTAAAGAC GGACGGGATCTCGTACACGCTCTTGAGCCATCGTGCGCGAGGTACCAGTT CTTTGTTACAAGCGGGTGAATCTCCTGGGGTGCAGAGCGGCAGTGCAAAA CCAGCATGTTTCCTTCGTGTCGTTTTTTTCTTTTGCCCGCCTTGTGCCTG ATGCATATATAGAGCTAGCATAAGATATGTAGATATAGATACAGATATAT TGTGTATGTGTGTGTTGGTGTTGCTGCGGCAAATGTAACTGTAGCCTCTG AGTTCTGTATTAGACGGGATCATTTACGGTGCGGTACTCACCGTGGCCGT TACCCGAGCAGACGTCGATCGATCCCCGAAGAGGGTAGCGAACAAAACAT CCCTTTTTGCTTGTCGCTCATGCGGTCGGTGACGGCAGGCGTTCTTCAAC CGCCCTCAGAAGCTGGACAGGGGCCAGGTGGCGATGGTGGAGATCGGCAT CAAGCGCCGGTGCGACGAGCTCGTTTCCGTCGGGGAGCAGATGAAGGGGG TACGGCAAGACACGCGCGAGGCGATTCATGGGGGCGAGCTGCGGTTCCTC GAGAGAAGGCGGAGGACCAAGATGGAGAAGACGGAGTTCAATCAGTTCAA GCAGGCGGGAATATAGCGGGGGAATGTTAGAAACAACTACGAACGGGAAT TTTTCTAAATATTCGAATAAACCGACCGAACGTCAGAAATATCTTCTCGT GATTGAAACAAAGTCTTGTTTAAAAAATGGACCCGAAATGTCAGTCTGTG CACTGGTTTCTCTGGCCACACAAATCAACCGCTGACACATTTGCTACGAC CATGTATGGCTCCTCGCCTCGTGACGCTCAAGTCCCGTTTTCGAGGATGT ACACAACCCTGACTTTTTTTGTCACGGGTGTTTTCGTGTCCCGCGTGTGG CAGGCCGTGTATCTCCTCGAACGAGAATACGATAACCTTGCGATTTGTAA GGACTACAATCGAAAGTGAGCATGCATGACGCCTTGTGAAGAAAAAACAC TGCAGGTTTCGTTAAGGTTTTACTGAGGGGAGGGGGGGGGGTTACGCAGG CAGCGAAGGGAAACTGGCGTTGTGCATGGGCCTTTCGGGTCATCCTACAG TAGTAGGGATTTCCGAATGGTCGGTGGGTACCGGTATTTCTGGTTGTGTT TCTGCGCAATTACAGTTGTGGAGGCTCGCTGCTCGTTCCGACTCAGACCG CACCGCGTCTTTAAAAGGAAAATCTGAACGCGTCTAGACCTTCTGAGCAT CCCCCAGTCAGGGGGGAAAAATGTCAAAACGTTTAGGTGGGATTGCAGCC GTTGTCGTTGATATTGCCCGAGATGTTTGTTCTTCGCAGTCATTGGTCAA TGGAAAAGAGTCACGAAAGGTGTATCGTTCGTTGTGCAACTCACTTTTTC CGGTTACGATTAAAAAGTAAATACATAAATAAAATGCCGCTTTACAAGTA GCGCTCCTCGACATGTTAACTCCCCGGACTGTTCACCTTTACATCCCTCC TTATTTCCTGTTCGCGCGTTTTTTGTATGGACATTTTTCGTATGGACAGA TTCAACCCCTTCGCACCCGTTCTATGGCTCGCGGTGGGCTTCGTGACGGG AATCATCGCGGTGATCTGGATCTTGCACATGATCCTGTACATGCTGCTGC AGCCAGCTCTGACTCCATTCTTGAACGACTATTTCTTCTGGTTCGACACG TGGTTTCCCCTGTTCGGAGTGCTCTCGGTGGCCATCTTTTCGCTGTACCT GCTGGTGGCGTGTGTGAAGGGCTGCTTCAAGTATGGGCTGCGCCTTGTGT GGTTCACGCTGCACCCCATGAAGCCGCACGGGACCTACATGAACTCGTTC CTCTTCAACTGCGGGTGAGCCGTTTTCATCTGATCGTGCGCCCCCCTGGT TGCGTCCGTTTAAGCTTCTCGCTGGCGTCGCGCGCCGTCCCATTTCGGTG ATGGAGCACCGCTCGGTGTTGTAGCACCGTCGGGCAGCGCCTGAAAATCG CAAGCACTTGTGAGGATTGGCGATCGAAACGGCGTGTCTCGTGAAGAGGG ACGGGAGTTGGTGCAGCAACCGGGCTTAATTAGAAGCAACACCTGATCAC GTGGAGGTTATTTTGTCTGTAATTTGTTAATGTCAGTTGCCCCCCCTCCC TGAAAACTCGAGGCATCGCGGTGCCCGCCGTTTCATGATTGGGACACTTA CCATATGATTACCACCGATTGTATTGTTCTAACCCAAACTCTGTCTCTTG TCTTTGACCTGTGTCTCGGGGGTTTGCGCTGATCCGGTTGGCGTCGCCCT TTTTGGCGTACTCCTTCCGCCGGTTCCCGTTCTGCGCTCCTCTTGTCTCC CAGAATCATTCTCATGTGCACCCCCCCGGTGATTCAGTTCACGGTGCAGG CCCTGTCCGCCTACCTGAGCAACACTGAAGTCACCAACTTTTTCAACGTT CAGGTTCGAGAGTTCAAGAAAAAACGAAACAGAACAGGAAAAAAAACGTG TTTTCGAAAATACAATAAAAAATAGCACGAAAAACTAACTGCCCGTGTGA AATTTCGCCCTAATCAAAGTGACAGTAACTGCGCGTTTAAAGCGGCCGTT AGAGGACGATCTATTGCGTACAAAAATTGCTATCGCCTTTTCCTGCGTCG AAAAACTCATTCCCAGCTCGAAACATCGGTTATATTATTACTTTTGTTTT ATCATAGCTCGATATTTTTACTTGCGGAAATTGCAGGTCCGCTACATGAG GTTCGTCCGCTACTTCTTCGACAACAACGTGTTCGTCATCGCGCTACTCG CTCTAACGATCCTGTCGACCATATACTTGGTGAGTTAATCGCGGTTAGGG ATTTGACCGGCCCGCTTTGTTCTCTCTGTTGGTCGTCGTATCCCAATGCA TGGAGGTTACCTCTCTCTAAAACCAGTATATTCTGGACACCTATCTCTAA AACAAATATATTCAGGTTACCTCTCTCTAAAACCAATATATTCAGGTCAC CCCTCCATAAAACCAATATATTCAGGTCACCTCTCACGAAAACCAAAACA TTTCGGTTACCTCTCACGAAAACCAGCACTTTTTTTACTGCGCAACGTTC TGTGCTTACCTTTCGAAACTCACGCTTAATCTATAATATGTAAGTCCAAC TGCTATGGGACCACAAAAATACAAAAACGAACACTTTTCCGGAGGTCATT TTTGTGGGAAGCGCGCTAGGGAGCAAAAGAAAACGGAAATGGTCCAGTTT TTTTTTGTAGGTCTGTGTGTTGTATGTGGCCACCTTCGGAAATGAGGTCA TTTCTTAAAAACACAGACCTGCGGAAATATTCACGCCTTTCGAGGCGCTG TACAAAACCTGTATTTGAGGACGACATATGCCCAGGTAGGACCAAATGAT AGCAACTGTAATAAGGCCATGGCCGCCGTAGCAGCAGCCGCGGACGAGCA CTACGATTGTATCTGACCTGTAATATACTTGAGCACTATTGTTACAGTTG CGTGTGGACGGGATGAATGGCGAAAACATACCCGATGAAGAGATCGCGGT CGCGGTGGGCGTCGGAGCAAGCGTGATTGATCACTGGTCCACTGTATCCG TCATCGCTGTGGTCTGGTCTGGCTGATGGCGTTGTTAGTTGCTATGATTC CTACCCGATGATGGGTTGTCTCGCCTCATTTTCAAATTTTAAACTATTAA TAGGGGGCTAGAGACTTGGATGGCCAGTATTCCACGGACCTCCGTCTCAT TTTTTATTTTATTTTTCGTTCACTCGCCCAGTCCATAGCGGGGCACATAC AAGAAATAAAATACAGAAATATTTGCCGCGCAAATCAACATTTTTTTGCG TTTCATTTTTGTATTTTTGTGGTCCCATAGCGGTTGCCCTAAGTACTTGA TTATACTGCTTTCAAAACAAGAAACTGGGGGCACCCAGCCCTCCTATACA GTATACAGTATACAGTATAATAGGATCCACACGGTCCGAGGGGGAAAATT GTCTCTAAAAGTTTATTAATACTTAGAGGAACATCACCATTGGCTGGGTG ATTCGAACAAAACGTTCACGTGAATTTTGTAGTTGAGTTCCCCAATGTTA TACTGTACACACGCTGTGATAGCCATGCGGGGACATGCACGCTGGGAGAC AAAAGCCTACTGTAAACACGTTTTTATAGGAAAATCGAGATTTTTTTTTT TTTTGGAGATGATAGACTTTGTATGTTGAGTTTGTAACTCGAGCCTGGTT TAGGTTGGTTCGAGAAAGGGAAAGAGGAGTTGCAGGGACACAAACGCCGG TACTTTCAACGTGCCCACTTCATACCAATAGTGGGTGTGGGAAAGAGAAG CGCATATTAATTGGCCCATTGTGACCTGCCAAGGCAGCACCCGTTTGGAA TTATCTTGAGGTTTACTGGCCCTGTGCCGGCGGACTCTAGGCTGTGAACG CCATCGGCACGCAATTGCGCGACCCGATAAACTCGGGACTGACCCGATGG TATATGGCGGTTTAAATAAATAAATGGACGCCCGCCGCGGAACTCGGGCG GAATCCCATAAGTAAACACCATATTCAGCCTGAGTATGGAGATGAGCAGG CTGACGCGGGACGGGACTGCCGAACCCGTTTTGCGAGACCAAATTCTCAG GCGCTAACGGGGACAGGGAAATACTCATTTTCCCTGTTCAGTTGACCACG AGCAGGATTGGCAACCTTACCCGGTTGATCCATACTCTTGCTTGCCATAA GTGGTGTGATGTGATTACTATTATATACATAGATAGATACATATATGTTA ATGTTAATAGTTGAATCCAGAACTATTTAATAACTGTTGTAGGTTGACAG GTGTGAACATTTTTGATACAGAAAAAACGTACTATTAATAGTAGGTGAAA TGAGGACAAAAAACCCTTTACAAAAGGCGTAGTAATAATCAACCGCGGTG CAGTAATATGTATGTATGTATGTATGTATGGTCATCACATATAGCAGAGT ATGGATCAACCGGGTTAGGTTGCCAATCCTGCTCGTGGTCAGCTGGACAG GGAAAATAATATTCCCCTGTCCCCGTAATAGCAAATTAACGGTATGGGAT TTAGTGTATTGATTGATATTGATAGTGCAAGATGGATGTATTGATATTGA TAGTGCAAGATGGATGTATTGATATTGATAGTGCAAGATGGATGTATTCA TATTGATAGTGCAAGATGGATGTATTGATATTGATAGTGCAAGATGGATG TATTCATATTGATAGTGCAAGATGGATGTATTGATATTGATAGTGCAAGA TGGATGTATTGATATTGATAGTGCAAGATGGATGTATTGATATTGATAGT GCAAGATGGATGTATTCATACTGATAGTGCAAGATGGATGTATTGATGTT GATAGTGCACGATGGATGTATTGATATTGATAGTGCAAGATGGATGTATT GATATTGATAGTGCAAGATGGATGTATTGATATTGATAGTGCAAGATGGA TGTATTCATATTGATATTGATAGTGCAAGATGGATGTATTGATATTGATA GTGCAAGATGGATGTATTCATATTGATATTATAGTGCAAGATGGATGTAT TCATATTGATAGTGCAAGATGGATGTATTCATATTGACAGTGCAAGATGG ATGTATTGATATTGATAGTGCAAGATGGATGTATTGATATTGATAGTGCA AGATGGATGTATTCATATTGATATTATAGTGCAAGATGGATGTATTCATA TTGATAAAAGCAACGAGTTGGTATTATGCACCCAATGAATTGGTGGCAAC AAGACACTGTTATAGACGCTGTGTTTATAGTATTATTATAGAAATATTTG AGGTAATTTAATTCCGGTGTCGAATGTGGTATACTGCTGCTGTATATTTG GTCAGTTTGAAACTGGTGAAAAAAGTTACGTTATTTGAAGTAAGGGATAC AAGACTGGCATCCACAAGTCGAAACATATCCATAGTATCGACCGCCATTT TGTAACAATTTGGTGTACAGTGCAGCATGTATGGGGCTTTGGGTATTCTT GTTATTTAAGAGCAGGAAAAATGCCTCATCGACACGGTTATACAGAGAAG TCAACGGTATTTACGTAGAACTAAAATGCTTCAGCATTCCCACTTCGTGT TACAGCTAATATATATATATATAATAGTAGGAATAGTATAATAATAGTAG GAATAGTATTATAATAGTAGGAATAGTTACAAAGTGCTGCACGAAAATCT CGGGTTGAAAACACTGTGGACACGTAATTTATACTGAGTGGAATATTTTG GTTGTCAGCTGTTCGACACAAGGCTTCACTACTAATAGGCATGGTGACTT CACTAGTGACATCTGAACGCATCTACATTTAAACCTTCCAAGCCTCGTCC ATGCCGTCATTTTGTGCACTTGACAAAATATATATTTTTCATTATCTCAT GGTTTCGGCAAAAAACAAAGGTACGCGGTACTGCACACTTCGATTAGCGG TTTCATGCCGCGTGCGAGCGCAGCTGTTGCTGTAATCCCCTTTTCTATAG CACCTAGAATAGTAGATAGTATCGTATCGGGCGATGTCTGCAACGGACTG GCGTGGCGCACGGTGCCCTACACAAATGCCGCACCGCAGTCTCGGTCCCA ACTGGCAGTACTTTAAGGTTAGGGTTTGTCCGGTACGTGAATACCCTAAT ACCCTGCTCGTTGGAACAGCCTCGCTTCTCTAATGAAACCCCTTTCCTTG GACGCCGTCGCCTCATCTCATGAATCCCTTGATCGACCATCCTTATCCGA TTTCAGTTGAGTAGACCAGCGGATCACCCGGTGAGCGCGAAAGACATACA GGAGATGTTGAGGAAGTCGGCACAACAGCAGGCGCCACAACCGCCCGACC CGCCCACCGGCGCCGTGGTGGAAGAAGGTGACGGCATGGCGTTCAACGCA CAATGACAACTTGGAACCGTCCGTGGCTTCGTGCTGATTGGCCTCTCTTC GTCGGATACTCTACTGCTGATTGGCCTCTCTTCGTCGGATACTCTACTGC TGATTGGCCTTTCTTCGATATGGTCGTCTGCGTCCCGTTGACAGTACGCG CGTTTTCTTCCTGGAATTCGGGCTTGGTACGCAGTGGATGGAGTTTAGCA CGTATGACTCTCCCAACGGCGTGCTGGCGCTCTCTCTCTCCTGTTACTAG TAGTTCGTTATCTGTTTGGGAATCTGTCCCTCGTCGTGCCCACCACCGTT TACTTTTTTGTCTTCCCCCTCTGTTTATTTATTTATTTTGTTTTTTCTAC GGAACTTGTTAATTTTTTGTCTTGCTTTCTTGTCGTGAATTGCATTTGAG CCCCCCCGCCGCCCTTTTTACTCTTTTGTTGCTTTTGTCCCGCCCAATGC ACTCAGCCTTGCCCCGGAATCGGTGGTAAGCCATCGAAAGCGTCAGCCCT TCCGATCGTCTTGTTGCGTTGCTGTAAGCTTTGCCCTCGTCGTCCGCTCG CGCGCGACGGGCGCGGTGCGTGATCGTAGCCTCTTAATTTGGTGATTGGA GAGTTTGTTCTCTCGTTCCGCCTCCCTCCCCCCCCCCATGGTTCCATCGT TGCATAGGTTCCTTAAATAGACTAGTAGTGTTGTTTCTCTGGTATAAATA GTGCAATATATTTGTATTATTAGTGCCCCTTGGAAGTCCTTCTCGCTGCA GCAAATCCTAAATCGCCCCTCCATCTTTTAGAATGCGTCGGATCGCTTGC CATGCTTATGAGAACCTTTCGCACGCTTGTCTTAAGTAAGAGGACGTCAC CGTCACCAGTGGGGGGTTAAACACCCCATGGCGCTGATGCTTTTCTTTCC AGTTCGTTGATTGGGCAAGAGGAACGACCGGGTGGCGAACAAATCCACCT TGCCAAGTTTGCACATTATTAGACAGTCAAGCAAAGGGACAAAGGAAGGG AAAGCGGCTCTGTTTTTGGGTTTGTTTTTTCGAGCAGTCAAGAGGACGAG AATCGGAAATGGCCGCGGACAGAGCTGAGCGCATTTTTTTGCTCAAGCGA GCTAAGCTCTGTACAAACCACCTTGAGGGGGGTGGATGGGAAAGGGGAGG AGGGGCTGCTGTACGAGTGGATGTGTTTGGCGAGGTCAGTGTGGAGCCCC GTAGCTACCTTACTGGAGGGGAGGCGAAGGTACAGAAGATGTTCCTGTGT AAGTTAAGCATGCTTCACTCTATAGGTTATCACATGACCTGGCTTTGTAG TGGGAGGAGGGAAGCTTGTGTATAAGTGTACGGTATACAGTGTGCTGCAC TTTCTTCCGATGGGTCTCATGTTTCTTCGCTCGATTAGGCTTAACTATGT ACCGCTACTGCTTTATTGTTATAATAGTGTGTGATGGTTCCAACCTGCTG GGTTAGCTCTAGTGTGATAGCTTCATTGGTGGCTTTTTTCACCCAGTCCT ACCCGGGGAGCGCTCAGCGCCACTATAGCTGCTTAGCCCAACAGTACTTT ACTTTCCCAGCGATTTACTTCCTTGTACTGTACGACGATCGAGAGGAGTC GAAGTGACCCTTCGCTCCATCCTCGTTAGCCCCTTGACGAGATTGTAGGC CTATCATGGCATACACCGGCACATCAGTATGTATTTATGCATGTGGTGAT CACTTATTATTCTAGCAGAGTGTTCATGGATCAACCGGGCAAAGTTCCAA TCCTGCTCGTAGTTAGCTGAACAGGAATAATGTTTTTTTCCGCGTCGTTC GCGCCTTGAAATTTGGTCTCATGAGACATGTTCGGCCATCCTATTCCGCG TCAGCCTGCTCATTCTCCATACTCAGGCTGAATCTGGTGCTAACTAACGG AGCCCGTATTACTGATCGCGTGTAAGGATCTTTAGGGGGTTCGGGGGTGG GGTTTCTAGTTTTGTCCCTTCGTATGTGATTCCCGGTTGGCCAACCCGAC CCTAACGTTATCGCTAACGCTTACCCAGGCCCTCCTACCCCAGCTGACCG CGTGGTCCCAATTCATGGCTGGCGCTTGGTGATAGTTTTGTGTGCGTGCC GCACGCGCGCTGGTGCGCATCTCTACCCGATCAGGAGTCAGCAAATTAAG AACTAAAGATCCTTTTGCACGGATGGTATTATGTACTGAACTCACG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig922:90893..104138-

>mRNA_A-nodosum_M_contig922.4.3 ID=mRNA_A-nodosum_M_contig922.4.3|Name=mRNA_A-nodosum_M_contig922.4.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=1437bp|location=Sequence derived from alignment at A-nodosum_M_contig922:90893..104138- (Ascophyllum nodosum dioecious)
ATGAAGACCGCGTGGTACATCATCTTCCTACTCATCTTCATCCTAGCGCT
CTTTGTTGTACCCTTCACCATCTTCTTCTACGAGGAGGACGACTCCTTAG
CGCTGACGGGTCGCAACGATTGCAAGAAGGCGTTCGTGGCTGCTTCAAAA
TACATGATCGGCGTGGTTGTAATCGTAGCTCTCGTGTTTGGCATCCTGTT
CGTGGTATTGGGTAAGTCGGACGTCCCCGTCACAAACTACGAGTTCGAAA
TGGTGGTGCTCTTGTCTACTGGCGATGAGTTGGGGAACCGCAGGACAATC
GAAAGTTCCAAGGGCTTGACGGAAGACCTCAGCGACGATCGCTCGGTACA
GTCCGGATCCATCGCGGTCAGCGACGAGTCCGTTCAGCTCCAGGTTTCCT
TTCCGGTGTTCGTGATGGCGCTGATGTCGTTTGTGGGTTGGGTTCTCTTC
GTCTTCTTTGGTGGCCTTGGTCTCGTGGGGATCCCGATCGACAGCATCAG
GGCGTTCTTCAACCGCCCTCAGAAGCTGGACAGGGGCCAGGTGGCGATGG
TGGAGATCGGCATCAAGCGCCGGTGCGACGAGCTCGTTTCCGTCGGGGAG
CAGATGAAGGGGGTACGGCAAGACACGCGCGAGGCGATTCATGGGGGCGA
GCTGCGGTTCCTCGAGAGAAGGCGGAGGACCAAGATGGAGAAGACGGAGT
TCAATCAGTTCAAGCAGGCCGTGTATCTCCTCGAACGAGAATACGATAAC
CTTGCGATTTGTAAGGACTACAATCGAAAATTCAACCCCTTCGCACCCGT
TCTATGGCTCGCGGTGGGCTTCGTGACGGGAATCATCGCGGTGATCTGGA
TCTTGCACATGATCCTGTACATGCTGCTGCAGCCAGCTCTGACTCCATTC
TTGAACGACTATTTCTTCTGGTTCGACACGTGGTTTCCCCTGTTCGGAGT
GCTCTCGGTGGCCATCTTTTCGCTGTACCTGCTGGTGGCGTGTGTGAAGG
GCTGCTTCAAGTATGGGCTGCGCCTTGTGTGGTTCACGCTGCACCCCATG
AAGCCGCACGGGACCTACATGAACTCGTTCCTCTTCAACTGCGGAATCAT
TCTCATGTGCACCCCCCCGGTGATTCAGTTCACGGTGCAGGCCCTGTCCG
CCTACCTGAGCAACACTGAAGTCACCAACTTTTTCAACGTTCAGGTCCGC
TACATGAGGTTCGTCCGCTACTTCTTCGACAACAACGTGTTCGTCATCGC
GCTACTCGCTCTAACGATCCTGTCGACCATATACTTGTTGAGTAGACCAG
CGGATCACCCGGTGAGCGCGAAAGACATACAGGAGATGTTGAGGAAGTCG
GCACAACAGCAGGCGCCACAACCGCCCGACCCGCCCACCGGCGCCGTGGT
GGAAGAAGGTGACGGCATGGCGTTCAACGCACAATGA
back to top