mRNA_A-nodosum_M_contig9171.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9171.1.1
Unique NamemRNA_A-nodosum_M_contig9171.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9171.1.1 vs. uniprot
Match: D8LSC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC8_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 3.810e-39
Identity = 72/117 (61.54%), Postives = 84/117 (71.79%), Query Frame = 1 
Query:   76 WGSICRLSKALTSIR-----QCGQKQGKKKWRQPRMANFLTEADRDELLHSTFFIKMCDDASWLHVEESNHEPEMNWLQSFWGGYKIVPRFQGEVKQNEAHRMVFQCEKGKHTDHIR 411
            W SI +LS+AL S R     Q G  +G+      +  NF TE D DELLHSTFFIKMCDDASWL+VE+   +PE+NWL S WGGYKI PRFQGEVKQNEAHRM+FQ E G+H  H+R
Sbjct:  321 WRSIDKLSRALGSTRRRTSRQGGAARGEGGEGSEQKMNFFTEKDLDELLHSTFFIKMCDDASWLYVEDHPFQPELNWLLSLWGGYKIAPRFQGEVKQNEAHRMLFQAENGRHRGHVR 437
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BLAST of mRNA_A-nodosum_M_contig9171.1.1 vs. uniprot
Match: A0A6H5L805_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L805_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 4.980e-39
Identity = 73/117 (62.39%), Postives = 85/117 (72.65%), Query Frame = 1 
Query:   76 WGSICRLSKALTSIR-----QCGQKQGKKKWRQPRMANFLTEADRDELLHSTFFIKMCDDASWLHVEESNHEPEMNWLQSFWGGYKIVPRFQGEVKQNEAHRMVFQCEKGKHTDHIR 411
            W SI +LS+AL S R     Q G  +G+      +  NF TE D DELLHSTFFIKMCDDASWL+VE+   +PE+NWL S WGGYKI PRFQGEVKQNEAHRM+FQ E G+H DH+R
Sbjct:  522 WRSIDKLSRALGSTRRRTSRQGGAARGEGGEGSEQKMNFFTEKDLDELLHSTFFIKMCDDASWLYVEDHPFQPELNWLLSLWGGYKIAPRFQGEVKQNEAHRMLFQAENGRHRDHVR 638
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9171.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSC8_ECTSI3.810e-3961.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L805_9PHAE4.980e-3962.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9171contigA-nodosum_M_contig9171:2539..4036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size415
Hectar predicted targeting categoryother localisation
Exons3
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870375.9522529-CDS-A-nodosum_M_contig9171:2538..26881680870375.9522529-CDS-A-nodosum_M_contig9171:2538..2688Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9171 2539..2688 +
1680870375.9689944-CDS-A-nodosum_M_contig9171:3160..33521680870375.9689944-CDS-A-nodosum_M_contig9171:3160..3352Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9171 3161..3352 +
1680870375.9800463-CDS-A-nodosum_M_contig9171:3965..40341680870375.9800463-CDS-A-nodosum_M_contig9171:3965..4034Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9171 3966..4034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9171.1.1prot_A-nodosum_M_contig9171.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9171 2539..4034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9171.1.1

>prot_A-nodosum_M_contig9171.1.1 ID=prot_A-nodosum_M_contig9171.1.1|Name=mRNA_A-nodosum_M_contig9171.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=137bp
AAGSPTSSSARSSSASDDGASGGGAWGSICRLSKALTSIRQCGQKQGKKK
WRQPRMANFLTEADRDELLHSTFFIKMCDDASWLHVEESNHEPEMNWLQS
FWGGYKIVPRFQGEVKQNEAHRMVFQCEKGKHTDHIR
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mRNA from alignment at A-nodosum_M_contig9171:2539..4036+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9171.1.1 ID=mRNA_A-nodosum_M_contig9171.1.1|Name=mRNA_A-nodosum_M_contig9171.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1498bp|location=Sequence derived from alignment at A-nodosum_M_contig9171:2539..4036+ (Ascophyllum nodosum dioecious)
GCTGCAGGGTCGCCGACATCGTCAAGCGCGAGGAGCAGCTCTGCTTCCGA
CGACGGGGCTAGTGGTGGCGGGGCTTGGGGCTCGATCTGTAGGCTTTCGA
AGGCATTGACCTCGATCAGACAATGCGGTCAGAAGCAGGGGAAAAAGAAG
GTGATACATGTATTTTTACATTTTCATCACCAATATATTACCTGTGTATT
TCGTTGGGCTCGACGTTTGTCGACACGGACGGCCTGTGCTGAGGAGTAGC
TCCGTGAGTGAAATTGCTGCCGTAGCGCTACTCCCTCATCCGACGCGCCT
CCCATCGTCTACGAGTATATGGCCCCATACGCGACGTACGAGTTAAATGG
AGAGAAACTCTTTTTCACACAGCACCTTGCCTTCGAGCCTATATAGATTA
CAGCCGCTCTGTTGGTACAGCAGCTCTATGAGACAGCGAACGTTTTTTTC
TCCTCCCTAGTCGGAACGACCCATTCCCCTCCCCCCAAAACCCCAAAATA
ACACCGCTCGTTGGAACGGATAAGACACACAGACACAATCTCTGCATTCT
TTAACGCCACATTCACAATCATTCCACCCACACTCCCCCCCAACTTTGAA
ACGCCTGTTCCTTCTTCACGAGTGGCGGCAACCGAGGATGGCGAATTTCC
TCACCGAAGCAGACAGGGACGAGTTGTTGCACAGCACTTTCTTCATCAAG
ATGTGCGACGACGCGTCCTGGCTCCACGTCGAAGAAAGCAACCACGAACC
GGAGATGAACTGGCTGCAGTCGTTCTGGGGTGGCTACAAGATTGTCCCGC
GTTTTCAGGGCGAGGTACTTTTCTCTCGCCTCCGGCTTCCCCCCCCGCCC
CCGCCCCCCCACCCCCCTGCACGGCTGTGGCTTGCCTTGCGCGCGGAATA
ACGGCGCATGGTCAAGCGTGCCCCATTTCTTACGACGGGATGTTGTTTGT
AGCTCGCGTTTTGTTGTCATTTTACCCCATTTGTGGATTTTTCCCGCTCA
GAAGCATGGGATCAGGTAAGCGTTTTTTTCTCGGCGGGGGGGGGGGGGGG
AGAATACACCAAATATTTGGTAGAGAGAGAGAAAGAGAGACCTTTCGAAA
ATTTCTCTCATCCCGTCTTAAAATATTTTTCGTTTGTAAAACCGCCAAGC
GCTCTCCACGAAACGTCACACTCTTGCTTGGCCTTACCGCAGGACGTGCA
GAGGCGGCGCGCGTTTTTTCATTCCCTCTGTATTTCATGTTTATGTATTT
TTTTTGTAGCCCCCTTGACCAAAATAAATAAATAAATAAACAGTAAAAAC
GAGACGTTAGGCGTCCCCCGATGTGTTTCTTGCTGTACAAAATTACTTTG
TACAACGGAACGATTTGCTGCCTTTTGCCTGTTTTTTTTAATGTACACTG
TACTTAACTACATACTTCGGTACACAGGTGAAGCAGAACGAGGCTCACCG
CATGGTGTTCCAATGCGAGAAAGGAAAGCACACGGATCATATCCGAAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9171:2539..4036+

>mRNA_A-nodosum_M_contig9171.1.1 ID=mRNA_A-nodosum_M_contig9171.1.1|Name=mRNA_A-nodosum_M_contig9171.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=411bp|location=Sequence derived from alignment at A-nodosum_M_contig9171:2539..4036+ (Ascophyllum nodosum dioecious)
GCTGCAGGGTCGCCGACATCGTCAAGCGCGAGGAGCAGCTCTGCTTCCGA
CGACGGGGCTAGTGGTGGCGGGGCTTGGGGCTCGATCTGTAGGCTTTCGA
AGGCATTGACCTCGATCAGACAATGCGGTCAGAAGCAGGGGAAAAAGAAG
TGGCGGCAACCGAGGATGGCGAATTTCCTCACCGAAGCAGACAGGGACGA
GTTGTTGCACAGCACTTTCTTCATCAAGATGTGCGACGACGCGTCCTGGC
TCCACGTCGAAGAAAGCAACCACGAACCGGAGATGAACTGGCTGCAGTCG
TTCTGGGGTGGCTACAAGATTGTCCCGCGTTTTCAGGGCGAGGTGAAGCA
GAACGAGGCTCACCGCATGGTGTTCCAATGCGAGAAAGGAAAGCACACGG
ATCATATCCGA
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